BAC Information

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BAC

Clone NameB6Ng01-162B19
Chromosome5 (Build37)
Map Location 132,849,986 - 132,980,930
singlet/doubletdoublet
Overlap geneAuts2
Upstream gene4930563F08Rik
Downstream geneLOC100039731
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162B19.bB6Ng01-162B19.g
ACCDH955032DH955033
length1,0601,076
definitionDH955032|Mus musculus domesticus DNA, BAC clone: B6Ng01-162B19, 5' end.DH955033|Mus musculus domesticus DNA, BAC clone: B6Ng01-162B19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(132,849,986 - 132,851,043)(132,979,854 - 132,980,930)
sequence
gaattcaaataaggcgtgaatatgatagtaaacacctgcaatccagacac
ttggaggctaaagcaggaaggagcaccaggaactcagaaaccacatagaa
tcttcttgctcagttcaacaaacttaagagttttttttgttttgttttgg
gtttttttttttttttttggttttttttttttggtttgtttgtttgtttg
ttttgcgtaattgctaggcaatcaacaaaaatcaacaaagcctttccaga
ccagagaactcatcttgggacacggacacacacacatacacacacacaca
cacacagactatcagtgtgcaaatacaagaccatatgtcataagctcctt
tctaatagggagcactttctaagttatgcttgcttataacatggaagtac
aatttactttaatcacagatttcctatgttaatatgttaatgagcttttt
ttatataatcaaaaaggaaattatccttcagttcctgagtgcatatcaat
agaagcctaagattaaaacctgggaaccctccagggaaaaagtatctaag
ggtaaaaccttgaaggggaataagtgagatttgatggctttgataccaat
aaatttcttgtagcctgaaatcaaccttgtactaggaagggaaccgtgca
aacctccatccatagcattgaaagagactgaatactcagtacaatgagag
ttcgaaaccccagccacaatcctagatctactaacactgaagagaagtca
tgccaaggaaacagtattttcaacccgtttccccaggtttgctccaatta
tagatggggaattatcaaggcctctgacagagccttcttatgaatgacct
aaggccatttataaggtcttagcagccacatggggctagcctgagcaaac
tctgggagcctgatgcaggaaacagtgatagggaaatgagaaaaaggcaa
acacatgaattctagccttgtagtcagagtatatataataggataaggaa
tcttaatagagcctgtatggggagcttggtggtggggcaggggggtaagt
aagtgaggaa
gaattccaggcagctctgtcttcaggtctctgccttgatttcctaccctg
atttccctctgtgaactgtaacaaggaagtaagggatgaaataaagtctt
tacttccctaagttgcttttggtcgatatttgtcaaagccacagaatgaa
aggagactatgaagtgataacactgttcttattcccagcatacaaccttc
atctctgtgttctgcttgagggcagggtgggtgtcctcgctatgtccgtg
gaccctgtacctcaggtgtagtttgattgcctggttgagcatgggaacaa
ggcattggagctttgaaaggtctctttagtaggcaaattcagtaaataaa
atcacattttatggaaaatatagatagggaaggaggacgtattgatattt
ttttttctcttcattgcttaatcgtggtttacatttcaagatttcaatga
caagggctggaggaatagctcactggtaccatgcttgtctatgggcacag
ggctctctctgggttccatcctcagccctgaaaaaaaaaatcagttgttt
tttggaaggaagtaaaaaattctatatcatgagctacatattcatttgtg
tgaaacgctgtataacatatgcattagcttttatagctccccttcctcat
atctaacaattcatttggaataccgtaagaacagggtagttcccattgac
ttcttgtgtctgagttcatagttaggtactgatgacattttctttgatat
atttgtatctatttgctacatgggcagaactggtctctggatgttgtagg
cagtaactaaactggaaaatagtctgacttagcattataattaacttcca
tggtgaccttgggcaaccacttaaccgtccaataaccaaggaggttgggc
tggaattactgaagtcccttggaaggtaaattgttcctccattctatagg
agcattcccttcaggagagagtttaaaagtggtatttttcctaggtaaat
tggcattgttcactagatgtctgccttcacccccacctgtttgggagcca
aaagtcttgcttatttatggagtaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_132849986_132851043
seq2: B6Ng01-162B19.b_46_1105

seq1  GAATTCAAATAAGGCGTGAATATGATAGTAAACACCTGCAATCCAGACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATAAGGCGTGAATATGATAGTAAACACCTGCAATCCAGACAC  50

seq1  TTGGAGGCTAAAGCAGGAAGGAGCACCAGGAACTCAGAAACCACATAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGGCTAAAGCAGGAAGGAGCACCAGGAACTCAGAAACCACATAGAA  100

seq1  TCTTCTTGCTCAGTTCAACAAACTTAAGAGTTTTTTTTGTTTTGTTTTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTGCTCAGTTCAACAAACTTAAGAGTTTTTTTTGTTTTGTTTTGG  150

seq1  GTTTTTTTTTTTTTTTTTGGTTTTTTTTTTTTGGTTTGTTTGTTTGTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTTTTTTTTTTTTGGTTTTTTTTTTTTGGTTTGTTTGTTTGTTTG  200

seq1  TTTTGCGTAATTGCTAGGCAATCAACAAAAATCAACAAAGCCTTTCCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCGTAATTGCTAGGCAATCAACAAAAATCAACAAAGCCTTTCCAGA  250

seq1  CCAGAGAACTCATCTTGGGACACGGACACACACACATACACACACACACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGAACTCATCTTGGGACACGGACACACACACATACACACACACACA  300

seq1  CACACAGACTATCAGTGTGCAAATACAAGACCATATGTCATAAGCTCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGACTATCAGTGTGCAAATACAAGACCATATGTCATAAGCTCCTT  350

seq1  TCTAATAGGGAGCACTTTCTAAGTTATGCTTGCTTATAACATGGAAGTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATAGGGAGCACTTTCTAAGTTATGCTTGCTTATAACATGGAAGTAC  400

seq1  AATTTACTTTAATCACAGATTTCCTATGTTAATATGTTAATGAGCTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTACTTTAATCACAGATTTCCTATGTTAATATGTTAATGAGCTTTTT  450

seq1  TTATATAATCAAAAAGGAAATTATCCTTCAGTTCCTGAGTGCATATCAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATAATCAAAAAGGAAATTATCCTTCAGTTCCTGAGTGCATATCAAT  500

seq1  AGAAGCCTAAGATTAAAACCTGGGAACCCTCCAGGGAAAAAGTATCTAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCCTAAGATTAAAACCTGGGAACCCTCCAGGGAAAAAGTATCTAAG  550

seq1  GGTAAAACCTTGAAGGGGAATAAGTGAGATTTGATGGCTTTGATACCAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAAACCTTGAAGGGGAATAAGTGAGATTTGATGGCTTTGATACCAAT  600

seq1  AAATTTCTTGTAGCCTGAAATCAACCTTGTACTAGGAAGGGAACCGTGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCTTGTAGCCTGAAATCAACCTTGTACTAGGAAGGGAACCGTGCA  650

seq1  AACCTCCATCCATAGCATTGAAAGAGACTGAATACTCAGTACAATGAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCCATCCATAGCATTGAAAGAGACTGAATACTCAGTACAATGAGAG  700

seq1  TTCGAAACCCCAGCCACAATCCTAGATCTACTAACACTGAAGAGAAGTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGAAACCCCAGCCACAATCCTAGATCTACTAACACTGAAGAGAAGTCA  750

seq1  TGCCAAGGAAACAGTATTTTCAACCCGTTTCCCCAGGTTTGCTCCAATTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAAGGAAACAGTATTTTCAACCCGTTTCCCCAGGTTTGCTCCAATTA  800

seq1  TAGATGGGGAATTATCAAGGCCTCTGACAGAGCCTTCTTATGAATGACCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGGGGAATTATCAAGGCCTCTGACAGAGCCTTCTTATGAATGACCT  850

seq1  AAGGCCATTCATAAGGTC-TAGCAGCCACATGGGGCTAGCCTGAGCAAAC  899
      ||||||||| |||||||| |||||||||||||||||||||||||||||||
seq2  AAGGCCATTTATAAGGTCTTAGCAGCCACATGGGGCTAGCCTGAGCAAAC  900

seq1  TCT-GGAGCCTGATGCAGGAAACAGTGAAAGGGAAATGAGAAAAAGGCAA  948
      ||| |||||||||||||||||||||||| |||||||||||||||||||||
seq2  TCTGGGAGCCTGATGCAGGAAACAGTGATAGGGAAATGAGAAAAAGGCAA  950

seq1  ACACATGAATTCTAGCCTTGTAGTCAGAGTATATATAATAGGATTAAGAA  998
      |||||||||||||||||||||||||||||||||||||||||||| | |||
seq2  ACACATGAATTCTAGCCTTGTAGTCAGAGTATATATAATAGGATAAGGAA  1000

seq1  TCTTAATAGAGCCTGTATTGGGAGCCTGGTGGTGGGGCAGGGGGGTAAGT  1048
      |||||||||||||||||| |||||| ||||||||||||||||||||||||
seq2  TCTTAATAGAGCCTGTATGGGGAGCTTGGTGGTGGGGCAGGGGGGTAAGT  1050

seq1  CAGTGAGGAA  1058
       |||||||||
seq2  AAGTGAGGAA  1060

seq1: chr5_132979854_132980930
seq2: B6Ng01-162B19.g_68_1143 (reverse)

seq1  TTTACTCCAT-AATAAGCAAGACTTTTTGCT-CCAAACAGGGTTGGGGGT  48
      |||||||||| |||||||||||||||| ||| |||||||||  |||||||
seq2  TTTACTCCATAAATAAGCAAGACTTTTGGCTCCCAAACAGG--TGGGGGT  48

seq1  GAGGGCAGAACATCTTAGTGAACAATGCCATTTAACCTAGG-AAAATACC  97
      || ||||| ||||| ||||||||||||||| || ||||||| ||||||||
seq2  GAAGGCAG-ACATC-TAGTGAACAATGCCAATTTACCTAGGAAAAATACC  96

seq1  ACTTTTAAACTCTCTCTTGAAGGGAATGCTCCTTATAGAATGGAGGAAC-  146
      |||||||||||||||| ||||||||||||||| |||||||||||||||| 
seq2  ACTTTTAAACTCTCTCCTGAAGGGAATGCTCC-TATAGAATGGAGGAACA  145

seq1  ATTTACCTTCCAAGGGACTTCAGTAATTCCAGCCCAACCTCCTTGGTTAT  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACCTTCCAAGGGACTTCAGTAATTCCAGCCCAACCTCCTTGGTTAT  195

seq1  TGGACGGTTAAGTGGTTGCCCAAGGTCACCATGGAAGTTAATTATAATGC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACGGTTAAGTGGTTGCCCAAGGTCACCATGGAAGTTAATTATAATGC  245

seq1  TAAGTCAGACTATTTTCCAGTTTAGTTACTGCCTACAACATCCAGAGACC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCAGACTATTTTCCAGTTTAGTTACTGCCTACAACATCCAGAGACC  295

seq1  AGTTCTGCCCATGTAGCAAATAGATACAAATATATCAAAGAAAATGTCAT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTGCCCATGTAGCAAATAGATACAAATATATCAAAGAAAATGTCAT  345

seq1  CAGTACCTAACTATGAACTCAGACACAAGAAGTCAATGGGAACTACCCTG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACCTAACTATGAACTCAGACACAAGAAGTCAATGGGAACTACCCTG  395

seq1  TTCTTACGGTATTCCAAATGAATTGTTAGATATGAGGAAGGGGAGCTATA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTACGGTATTCCAAATGAATTGTTAGATATGAGGAAGGGGAGCTATA  445

seq1  AAAGCTAATGCATATGTTATACAGCGTTTCACACAAATGAATATGTAGCT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTAATGCATATGTTATACAGCGTTTCACACAAATGAATATGTAGCT  495

seq1  CATGATATAGAATTTTTTACTTCCTTCCAAAAAACAACTGATTTTTTTTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATATAGAATTTTTTACTTCCTTCCAAAAAACAACTGATTTTTTTTT  545

seq1  TCAGGGCTGAGGATGGAACCCAGAGAGAGCCCTGTGCCCATAGACAAGCA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGCTGAGGATGGAACCCAGAGAGAGCCCTGTGCCCATAGACAAGCA  595

seq1  TGGTACCAGTGAGCTATTCCTCCAGCCCTTGTCATTGAAATCTTGAAATG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTACCAGTGAGCTATTCCTCCAGCCCTTGTCATTGAAATCTTGAAATG  645

seq1  TAAACCACGATTAAGCAATGAAGAGAAAAAAAAATATCAATACGTCCTCC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCACGATTAAGCAATGAAGAGAAAAAAAAATATCAATACGTCCTCC  695

seq1  TTCCCTATCTATATTTTCCATAAAATGTGATTTTATTTACTGAATTTGCC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTATCTATATTTTCCATAAAATGTGATTTTATTTACTGAATTTGCC  745

seq1  TACTAAAGAGACCTTTCAAAGCTCCAATGCCTTGTTCCCATGCTCAACCA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAAAGAGACCTTTCAAAGCTCCAATGCCTTGTTCCCATGCTCAACCA  795

seq1  GGCAATCAAACTACACCTGAGGTACAGGGTCCACGGACATAGCGAGGACA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATCAAACTACACCTGAGGTACAGGGTCCACGGACATAGCGAGGACA  845

seq1  CCCACCCTGCCCTCAAGCAGAACACAGAGATGAAGGTTGTATGCTGGGAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCCTGCCCTCAAGCAGAACACAGAGATGAAGGTTGTATGCTGGGAA  895

seq1  TAAGAACAGTGTTATCACTTCATAGTCTCCTTTCATTCTGTGGCTTTGAC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAACAGTGTTATCACTTCATAGTCTCCTTTCATTCTGTGGCTTTGAC  945

seq1  AAATATCGACCAAAAGCAACTTAGGGAAGTAAAGACTTTATTTCATCCCT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATCGACCAAAAGCAACTTAGGGAAGTAAAGACTTTATTTCATCCCT  995

seq1  TACTTCCTTGTTACAGTTCACAGAGGGAAATCAGGGTAGGAAATCAAGGC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCCTTGTTACAGTTCACAGAGGGAAATCAGGGTAGGAAATCAAGGC  1045

seq1  AGAGACCTGAAGACAGAGCTGCCTGGAATTC  1077
      |||||||||||||||||||||||||||||||
seq2  AGAGACCTGAAGACAGAGCTGCCTGGAATTC  1076