BAC Information

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BAC

Clone NameB6Ng01-162E06
Chromosome5 (Build37)14 (Build37)
Map Location 113,895,599 - 113,896,02637,165,859 - 37,166,365
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSez6l, Myo18b, Adrbk2, Crybb2, LOC100042920, Crybb3, 2900026A02Rik, Gm854, Rutbc2, Aym1
Downstream geneC530024P05Rik, Cmklr1, LOC381707, D5Ertd40e, Sart3, LOC100041786, Iscu, Tmem119, Selplg, Coro1c, Ssh1, Dao1, Svop, Usp30, Alkbh2, Ung, Acacb, Foxn4, Myo1h, Kctd10, Ube3b, Mmab, Mvk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162E06.bB6Ng01-162E06.g
ACCDH955147DH955148
length589501
definitionDH955147|Mus musculus domesticus DNA, BAC clone: B6Ng01-162E06, 5' end.DH955148|Mus musculus domesticus DNA, BAC clone: B6Ng01-162E06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(113,895,599 - 113,896,026)(37,165,859 - 37,166,365)
sequence
gaattctctgtttagctctaccacatttttttttttaatttggtctttgg
tttatttgaggttaacttcttgagggctttgtatattttggatattagtc
ttttgtcaaatgtagggttaatgatgtcctattgatggtgtcttttgctt
tatagaagcttttaagtctcatgagatctcatttatcaatagttaatctt
agagcctgagtcattggtgatctgttcaggacatttccccctgaaatgtg
ccaatgcattcaaggctatctccctctttctcttctattaaattcagtat
atatggtttaatggtgaggtccttgatccagttcgatttgagctttgtac
agagtgataagtatgggtctatttttattctcctacatacagaccaccac
ttagactagaaccatttactgacaatgcattcttttttccattgtatgtt
tttggctttgttgtcaaagacaaagtaccaataggtacatggatttaatt
ctgggtctttgattctattccactgattgaccagactgtttctgtaccaa
taatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
cttctttttatttgtttggcaaccagatctcagctcattactttgaggcc
agtcttggagggtgcttcctgattttttgctaatgcattacaagcaagtc
aaaggctttcttttccggtcttaacccatttatttcggtcaaatttctta
cagaaaacaaaaaggaaattgttggtttcatttacatacagttcttagaa
gagttaacattatagacagaaaataacatggcagctgccggggactagga
aaaggatgacaagttaatacttaatgattttaggtttaaaattattaaaa
gattaaaagaattgtggagctacttgttcatgatggatacacaatactgt
gcttgcattcaacaccactgaattgaacacttataatgctgaagatggta
cttttatgttatgtgtattttatcatcattaaatttgcggggagtggaga
ataacaataagcagactgggaggagagatggtataagggggtagaatggg
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_113895599_113896026
seq2: B6Ng01-162E06.b_588_631 (reverse)

seq1  --CACACACACACACACACACACACACACACACAGAGGATT--TGGCCAC  46
        |||||||||||||||||||||||||||||||| |  |||  |      
seq2  CACACACACACACACACACACACACACACACACATATTATTGGT------  44

seq1  AAGAAGCAACTCTCCCTGAAACTCTACTGGTCCCAAATAAATACAAAGAA  96
                                                        
seq2  --------------------------------------------------  44

seq1  GAACAAAAAGCCTCATTAATCTTTTAAAGAGATCATCCGAGCCTGGGAAA  146
                                                        
seq2  --------------------------------------------------  44

seq1  ATCCTGATTCTCAGAGAGGCTTCTGGCAGATCAGTGGCCATCAGCCTTCC  196
                                                        
seq2  --------------------------------------------------  44

seq1  ACTGTTAATCCACCTGCTGTCCAGGGTGAACCCAAGCCGGCCTCACCCGC  246
                                                        
seq2  --------------------------------------------------  44

seq1  AGCCCTGCTTAACCCTCTCGCTGCTCGGGATTGTCATAACCATCCCCACC  296
                                                        
seq2  --------------------------------------------------  44

seq1  ATGGAGATTCCCCCAGCAGCTCCCACTACAGTAGAGGGAGAAAATCACCC  346
                                                        
seq2  --------------------------------------------------  44

seq1  AGCCCTGCCCACAGCTGAAGCCTGAAGCTCTGGGTGCTGTCTTCTGTCCC  396
                                                        
seq2  --------------------------------------------------  44

seq1  CCCCCCCCCCCACACACACACATATTCTTGGT  428
                                      
seq2  --------------------------------  44

seq1: chr14_37165859_37166365
seq2: B6Ng01-162E06.g_68_574 (reverse)

seq1  CCCCATTCTACCCCCTTATACCATCTCTCCTCCCAGTCTGCTTATTGTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATTCTACCCCCTTATACCATCTCTCCTCCCAGTCTGCTTATTGTTA  50

seq1  TTCTCCACTCCCCGCAAATTTAATGATGATAAAATACACATAACATAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCACTCCCCGCAAATTTAATGATGATAAAATACACATAACATAAAA  100

seq1  GTACCATCTTCAGCATTATAAGTGTTCAATTCAGTGGTGTTGAATGCAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCATCTTCAGCATTATAAGTGTTCAATTCAGTGGTGTTGAATGCAAG  150

seq1  CACAGTATTGTGTATCCATCATGAACAAGTAGCTCCACAATTCTTTTAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTATTGTGTATCCATCATGAACAAGTAGCTCCACAATTCTTTTAAT  200

seq1  CTTTTAATAATTTTAAACCTAAAATCATTAAGTATTAACTTGTCATCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAATAATTTTAAACCTAAAATCATTAAGTATTAACTTGTCATCCTT  250

seq1  TTCCTAGTCCCCGGCAGCTGCCATGTTATTTTCTGTCTATAATGTTAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAGTCCCCGGCAGCTGCCATGTTATTTTCTGTCTATAATGTTAACT  300

seq1  CTTCTAAGAACTGTATGTAAATGAAACCAACAATTTCCTTTTTGTTTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAAGAACTGTATGTAAATGAAACCAACAATTTCCTTTTTGTTTTCT  350

seq1  GTAAGAAATTTGACCGAAATAAATGGGTTAAGACCGGAAAAGAAAGCCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAAATTTGACCGAAATAAATGGGTTAAGACCGGAAAAGAAAGCCTT  400

seq1  TGACTTGCTTGTAATGCATTAGCAAAAAATCAGGAAGCACCCTCCAAGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTGCTTGTAATGCATTAGCAAAAAATCAGGAAGCACCCTCCAAGAC  450

seq1  TGGCCTCAAAGTAATGAGCTGAGATCTGGTTGCCAAACAAATAAAAAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTCAAAGTAATGAGCTGAGATCTGGTTGCCAAACAAATAAAAAGAA  500

seq1  GGAATTC  507
      |||||||
seq2  GGAATTC  507