BAC Information

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BAC

Clone NameB6Ng01-162E22
Chromosome5 (Build37)
Map Location 139,793,125 - 139,936,721
singlet/doubletdoublet
Overlap geneCox19, Cyp2w1, 3110082I17Rik, D830046C22Rik, Gpr146, C130050O18Rik, Gpr30
Upstream geneGot2-ps1, 2610020C11Rik, LOC433955, EG666533, 1700123K08Rik, Zfp68, LOC665882, A430033K04Rik, BC004044, EG384244, Pdgfa, Prkar1b, Heatr2, Unc84a, 1110007L15Rik, Centa1
Downstream geneZfand2a, Uncx4.1, LOC100041200, LOC100041209, LOC100041217, Micall2, Ints1, Mafk, BC019731, 1810042K04Rik, A930017N06Rik, LOC100041270, Mad1l1, Ftsj2, Nudt1, Snx8, Eif3s9, LOC100041291, EG231836
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162E22.bB6Ng01-162E22.g
ACCDH955179DH955180
length4121,108
definitionDH955179|Mus musculus domesticus DNA, BAC clone: B6Ng01-162E22, 5' end.DH955180|Mus musculus domesticus DNA, BAC clone: B6Ng01-162E22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(139,936,310 - 139,936,721)(139,793,125 - 139,794,240)
sequence
gaattctctgagaggtgttctatctgttcagcccagcaccagcggccaga
attcggccgcacgtgcccacgccaccaggtgttgccctggcaactgactg
cgctctcagctcagagagatgacgccaatatcctgcgccagggctgcgcc
ctcccatgcggcggccattggctggctggaagatggacgccttcccgatc
caatggatagcgctgatcttctgagggcgggacggcgcggaacctgctga
gctggtggtggaggcgcgtggcagaggtgtgcgagagtgggagctgcagg
tgcgtgctgggtagggtggggtgacggggggttgtcgcatccgcccgggg
agacgcggtcctgggccgggctgtgcgtctctgcgcagctctccacgtgg
atttccagagat
gaattctctgcccattaacttggaaactgttctagggcccatgctatctc
aagacaggccataaaagtggcctgggctatggaatggtaagccagagatc
acagatcagagatcacagatgcgaggctgagtccccagcacccaccaaca
ccctggttcaacaccctggttgcccagtcctcacttctgctgggtcaacc
actctgactgcccaaggccacgccccctccttccccctgccctgcctctc
ctggtccttccaaggtgactcagtccctgggtgcttccgggagcagctga
gcaggtcaggcgtgttctggggctgagccaggtggggcaggtgtgtcccc
cttggtcaaggcctaggcatggggaggagcggagcagtggaccctatcag
tggaatgtgactctggcagccctgtggctcagcttttagagacctttgct
cttccaaaggtcaggctcgtggccagatagcctgtttgctacccagagta
aaggcaggtgggcagcttcaagctggagggtaggaggccttcaaaagaaa
tagaatacaagggtgtccggagtggcacatatacatagctgcccccagca
atccacctgcatgggggtcccttttcctgacctacctctagggttctctc
tcctaccccactggagtgagagcatcgggagcttcgatggatgctgccga
ttcccacaatgaggctgtgtgtgcttcctatggagtttgcactcagtcag
ttcctgggccctagatgctggaggctctgactctcttctaggcagggcga
gtggaactccccgccccctcgcccttgtgcctcccctcctattcagatga
agactccatgctccgtagtctctaccctgacactctcttctctgggtccc
actgccacaggggctcagctccctgctctgtgctcgactgggctcgaaac
ctatttaggaccagctagaagtgatgcgcgtaagagactgggtttagaca
ccactgtgtcttcatgagtccgttaattttaccactggcgatttgtgctg
ggagggttttaaaaggagaaaagagccattctacatgcttggttgcgcca
agttctgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_139936310_139936721
seq2: B6Ng01-162E22.b_42_453 (reverse)

seq1  ATCTCTGGAAATCCACGTGGAGAGCTGCGCAGAGACGCACAGCCCGGCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTGGAAATCCACGTGGAGAGCTGCGCAGAGACGCACAGCCCGGCCC  50

seq1  AGGACCGCGTCTCCCCGGGCGGATGCGACAACCCCCCGTCACCCCACCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCGCGTCTCCCCGGGCGGATGCGACAACCCCCCGTCACCCCACCCT  100

seq1  ACCCAGCACGCACCTGCAGCTCCCACTCTCGCACACCTCTGCCACGCGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGCACGCACCTGCAGCTCCCACTCTCGCACACCTCTGCCACGCGCC  150

seq1  TCCACCACCAGCTCAGCAGGTTCCGCGCCGTCCCGCCCTCAGAAGATCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCACCAGCTCAGCAGGTTCCGCGCCGTCCCGCCCTCAGAAGATCAG  200

seq1  CGCTATCCATTGGATCGGGAAGGCGTCCATCTTCCAGCCAGCCAATGGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTATCCATTGGATCGGGAAGGCGTCCATCTTCCAGCCAGCCAATGGCC  250

seq1  GCCGCATGGGAGGGCGCAGCCCTGGCGCAGGATATTGGCGTCATCTCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGCATGGGAGGGCGCAGCCCTGGCGCAGGATATTGGCGTCATCTCTCT  300

seq1  GAGCTGAGAGCGCAGTCAGTTGCCAGGGCAACACCTGGTGGCGTGGGCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGAGAGCGCAGTCAGTTGCCAGGGCAACACCTGGTGGCGTGGGCAC  350

seq1  GTGCGGCCGAATTCTGGCCGCTGGTGCTGGGCTGAACAGATAGAACACCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCGGCCGAATTCTGGCCGCTGGTGCTGGGCTGAACAGATAGAACACCT  400

seq1  CTCAGAGAATTC  412
      ||||||||||||
seq2  CTCAGAGAATTC  412

seq1: chr5_139793125_139794240
seq2: B6Ng01-162E22.g_67_1174

seq1  GAATTCTCTGCCCATTAACTTGGAAACTGTTCTAGGGCCCATGCTATCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGCCCATTAACTTGGAAACTGTTCTAGGGCCCATGCTATCTC  50

seq1  AAGACAGGCCATAAAAGTGGCCTGGGCTATGGAATGGTAAGCCAGAGATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGGCCATAAAAGTGGCCTGGGCTATGGAATGGTAAGCCAGAGATC  100

seq1  ACAGATCAGAGATCACAGATGCGAGGCTGAGTCCCCAGCACCCACCAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATCAGAGATCACAGATGCGAGGCTGAGTCCCCAGCACCCACCAACA  150

seq1  CCCTGGTTCAACACCCTGGTTGCCCAGTCCTCACTTCTGCTGGGTCAACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGTTCAACACCCTGGTTGCCCAGTCCTCACTTCTGCTGGGTCAACC  200

seq1  ACTCTGACTGCCCAAGGCCACGCCCCCTCCTTCCCCCTGCCCTGCCTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGACTGCCCAAGGCCACGCCCCCTCCTTCCCCCTGCCCTGCCTCTC  250

seq1  CTGGTCCTTCCAAGGTGACTCAGTCCCTGGGTGCTTCCGGGAGCAGCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCCTTCCAAGGTGACTCAGTCCCTGGGTGCTTCCGGGAGCAGCTGA  300

seq1  GCAGGTCAGGCGTGTTCTGGGGCTGAGCCAGGTGGGGCAGGTGTGTCCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTCAGGCGTGTTCTGGGGCTGAGCCAGGTGGGGCAGGTGTGTCCCC  350

seq1  CTTGGTCAAGGCCTAGGCATGGGGAGGAGCGGAGCAGTGGACCCTATCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTCAAGGCCTAGGCATGGGGAGGAGCGGAGCAGTGGACCCTATCAG  400

seq1  TGGAATGTGACTCTGGCAGCCCTGTGGCTCAGCTTTTAGAGACCTTTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATGTGACTCTGGCAGCCCTGTGGCTCAGCTTTTAGAGACCTTTGCT  450

seq1  CTTCCAAAGGTCAGGCTCGTGGCCAGATAGCCTGTTTGCTACCCAGAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAAAGGTCAGGCTCGTGGCCAGATAGCCTGTTTGCTACCCAGAGTA  500

seq1  AAGGCAGGTGGGCAGCTTCAAGCTGGAGGGTAGGAGGCCTTCAAAAGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAGGTGGGCAGCTTCAAGCTGGAGGGTAGGAGGCCTTCAAAAGAAA  550

seq1  TAGAATACAAGGGTGTCCGGAGTGGCACATATACATAGCTGCCCCCAGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATACAAGGGTGTCCGGAGTGGCACATATACATAGCTGCCCCCAGCA  600

seq1  ATCCACCTGCATGGGGGTCCCTTTTCCTGACCTACCTCTAGGGTTCTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACCTGCATGGGGGTCCCTTTTCCTGACCTACCTCTAGGGTTCTCTC  650

seq1  TCCTACCCCACTGGAGTGAGAGCATCGGGAGCTTCGATGGATGCTGCCGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACCCCACTGGAGTGAGAGCATCGGGAGCTTCGATGGATGCTGCCGA  700

seq1  TTCCCACAATGAGGCTGTGTGTGCTTCCTATGGAGTTTGCACTCAGTCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCACAATGAGGCTGTGTGTGCTTCCTATGGAGTTTGCACTCAGTCAG  750

seq1  TTCCTGGGCCCTAGATGCTGGAGGCTCTGACTCTCTTCTAGGCAGGGCGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGGGCCCTAGATGCTGGAGGCTCTGACTCTCTTCTAGGCAGGGCGA  800

seq1  GTGGAACTCCCCGCCCCCTCGCCCTTGTGCCTCCCCTCCTATTCAGATGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAACTCCCCGCCCCCTCGCCCTTGTGCCTCCCCTCCTATTCAGATGA  850

seq1  AGACACCATGCTCCGTAGTCTCTACCCTGACACTCCTCTTCTCTGGGTCC  900
      |||| ||||||||||||||||||||||||||||| ||||||||||||| |
seq2  AGACTCCATGCTCCGTAGTCTCTACCCTGACACT-CTCTTCTCTGGGT-C  898

seq1  CCACTGCCACAGGGGCTCAGGCTCCCTGCTCTGTGCTCGACTGGGCTCGA  950
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CCACTGCCACAGGGGCTCA-GCTCCCTGCTCTGTGCTCGACTGGGCTCGA  947

seq1  AACCTATTTTAAGAACCAGCTAGAAGTGATGGCGCCGTAAGAGACTGGGT  1000
      |||||||||  || |||||||||||||||| ||| |||||||||||||| 
seq2  AACCTATTT--AGGACCAGCTAGAAGTGAT-GCG-CGTAAGAGACTGGG-  992

seq1  TTTAGACACCACTGTGTCTTCATGGAGTCGGTTAATTTTACCACATGCGA  1050
      ||||||||||||||||||||||| ||||| ||||||||||||||  ||||
seq2  TTTAGACACCACTGTGTCTTCAT-GAGTCCGTTAATTTTACCACTGGCGA  1041

seq1  ATTGTGCTGGGAGGGTTTTTAAAAAGGAGAAAGAAGC--ATCTACATGCT  1098
       ||||||||||||||||||  |||||||||||  |||   ||||||||||
seq2  TTTGTGCTGGGAGGGTTTT--AAAAGGAGAAAAGAGCCATTCTACATGCT  1089

seq1  --GGTGCGCCCCAGTTCTGC  1116
        | |||| || ||||||||
seq2  TGGTTGCG-CCAAGTTCTGC  1108