BAC Information

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BAC

Clone NameB6Ng01-162I02
Chromosome5 (Build37)
Map Location 142,899,774 - 143,040,600
singlet/doubletdoublet
Overlap geneFoxk1, C330006K01Rik, D930005D10Rik, Papolb, Mmd2
Upstream geneSdk1, LOC666727
Downstream geneWipi2, Slc29a4, Tnrc18, LOC100038954, LOC100041004, LOC100038972, LOC100038984, LOC100042525, LOC100038888, Zfp469, LOC666788, Fbxl18, D430018E03Rik, LOC100042558, Actb, Fscn1, 2810055G22Rik, LOC667809, Olfr718-ps1, LOC640324, LOC100042605, Rbak, 4933411G11Rik, Spdyb, Zfp12, Zfp316
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162I02.bB6Ng01-162I02.g
ACCDH955328DH955329
length1,1821,163
definitionDH955328|Mus musculus domesticus DNA, BAC clone: B6Ng01-162I02, 5' end.DH955329|Mus musculus domesticus DNA, BAC clone: B6Ng01-162I02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(143,039,380 - 143,040,600)(142,899,774 - 142,900,932)
sequence
gaattcttcatgggtctaaggaacctttcagtgacaacaagaccaccttt
tgaatccccaacaaggaagaaaacatttagccctttctatggaggagaaa
ttaattcagtactgtgtttctactttagacagttttttttttttttttac
tataaccaatattaacatcttcagaaaagggccaaacagggaatgaccat
ccagaaggtaatttttaaagttctgagggcctccctttctgcttcaggag
aaagtgattagcattatagatgatctatggggaatatccctgaccatggt
aggcatcaccaatcaattgcagcacgcatgtagcagtagaattcaacata
gtgtcccatgcagacattactaattgattctgtgctcatgatggaacctt
ttggctggcctggtgtgttaggagacaggatcacagaataactattagaa
gtcactgtatgtaggagcatgcttatctctgggcaccattaccttctact
cccttctgtccatatttgaggaagttctttaagtgagctctttggaggca
gtgcagggagaccaaggcatacattccaaacaggtcctgacactctgttc
cgccatggttggctcttggttctagaggagctgagatctgggatgaagat
gctgatacctggccattttttctcatctcaaagaatctggagaaaggatg
ctgtgttcaccagaggggcttttcctcagtgtcaggaaacggctctcgga
ggcccctcagatggccctaggagcagggtcttcctctatcagaatgggtg
gaatatcttcatccctcaacctctgaagtgacctgtcagctaagagcatg
gctcccagggcctgtcctcagcccctctattcctgggctagcctcatcct
aagatgccacatggacactggctgagtattgagcagctggctggctcctg
acctgaactgacatctcagactctctgcagagtctgctggaaatcacgtc
ttgttcaacactgccagcagaatggtgtgggcaggtgtgcagacagatgc
ttatactttgtctagtgcatcaggtgtttcagggcttcagcactgatcat
atgtcaaagcagtattatcagttatgcatcctcgaaagatgaacagggag
tcctagatgttggtctagctgctggtacatgc
gaattccatgctctctgtcatgtgctgtatctcatcagcatattcatata
tgcaaattaacatacatgtgggtgcagtatgacaaggagaaaaaagaaca
agaaaggctgagcataaggggacagggagggacaggatgacagtcctggg
cggtggtcctgggcagaagcagtcagctgtcacacagtacttgggagttc
atgttttcttttttccgatagggtctcatgtagcccaagctggccttgaa
cttgctgtgttgtcaaaggatgactttataaacatttggtcttcctgcgt
ccacctcccaaatgctgtggtcacaggtatacggacagctttcccctggc
ttttatgtgagcatttgctgtctgtgactcagtttccctcttttgaaacc
tggaacgtgatggaagctggttgctgctttccccctttccgaaagataca
cttggtccttgcttttcaccgaggcaggaaatcaaagaaggatcttggga
ctggggaggtgttgcagtggggagctgtgtttgagtcctcggtatccatc
cagtgtaaaagctagacctggttgcacggacctgtacctcagccacgtgg
gcagttgaaacaagattgctggctgctagcatagctccaggttctctgag
agaccctgtctcccgggaataagggagtgctgaagcaggacacccattat
ccccctcccatctcctgcacacatgtgtgcacacaccacgtacatgtatg
tgcagatatacacacggacctcagaagctttggctcacccaagacaacag
gtcctgtctctgctggtgtgcagcgaagggatgagattcgttccatgaaa
tgaaactcacttccttattgttggtggccctccgccagcaaggttgatgc
tgccttcccaggaatacggttgctctctctctttgcttctggcctcgact
tcttccgtgctgtggactagccaactgtactactgatgccagaataggac
taggtggggctgtaagagaattgggagctgcccgtcacagccggccctgt
tcccacccactggggttgcacctcctggggctggcctgggccaagtatgg
cctcttgggtagtttggttaggtttggctgccctctctctttataggatg
caagctttgttgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_143039380_143040600
seq2: B6Ng01-162I02.b_44_1225 (reverse)

seq1  GCATGTACACAAGCAGGCTAGACAAAACCAATCTTAAAGCTCACTGGCTC  50
      ||||||  || |||| ||||||| ||    ||| ||   ||| |||  | 
seq2  GCATGT--ACCAGCA-GCTAGACCAA---CATC-TAGGACTCCCTG--TT  41

seq1  CATCTTTCTGAGGAATGCATAAACTTGATTTAATACTGGCTTTGACATAT  100
      |||||||| |||| ||||||||   |||  ||||||| ||||||||||||
seq2  CATCTTTC-GAGG-ATGCATAA--CTGA--TAATACT-GCTTTGACATAT  84

seq1  GGGATTCCAGGTGCTGAAGCCCTGAAACACCTTGGAATGCACTAGAACAA  150
        |||  || ||||||||||||||||||||||    ||||||||| ||||
seq2  --GAT--CA-GTGCTGAAGCCCTGAAACACCT---GATGCACTAG-ACAA  125

seq1  AGTATAAGGCACCCTGTCTTGGCACACCCTTGCCCACACCCATCTGGCTG  200
      ||||||| |||  ||||||  |||||||  ||||||||||  ||| ||||
seq2  AGTATAA-GCA-TCTGTCT--GCACACC--TGCCCACACCATTCT-GCTG  168

seq1  GCAGTTGTTGAACAAGACCTTGGATTTCCAGCAGACTCTTGCAGAGAGTC  250
      |||| ||||||||||||| |  |||||||||||||||| |||||||||||
seq2  GCAG-TGTTGAACAAGACGT--GATTTCCAGCAGACTC-TGCAGAGAGTC  214

seq1  TGAGATGTCAGTTCAGGTCAGGAGCCAGGCCAGCTGCTCAATACTCAGCC  300
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TGAGATGTCAGTTCAGGTCAGGAGCCA-GCCAGCTGCTCAATACTCAGCC  263

seq1  AGTGTCCATGTGGCATCTTAGGATGAGGCTAGCCCAGGAATAGAGGTGGC  350
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AGTGTCCATGTGGCATCTTAGGATGAGGCTAGCCCAGGAATAGAGG-GGC  312

seq1  TGAGGACAGGCCCCTGGGAGCCATGCTCTTAGCTGACAGGTCACTTCAGA  400
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TGAGGACAGG-CCCTGGGAGCCATGCTCTTAGCTGACAGGTCACTTCAGA  361

seq1  GGTTGAGGGATGAAGATATTCCACCCATTCTGATAGAGGAAGACCCTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGAGGGATGAAGATATTCCACCCATTCTGATAGAGGAAGACCCTGCT  411

seq1  CCTAGGGCCATCTGAGGGGCCTCCGAGAGCCGTTTCCTGACACTGAGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGGCCATCTGAGGGGCCTCCGAGAGCCGTTTCCTGACACTGAGGAA  461

seq1  AAGCCCCTCTGGTGAACACAGCATCCTTTCTCCAGATTCTTTGAGATGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCCTCTGGTGAACACAGCATCCTTTCTCCAGATTCTTTGAGATGAG  511

seq1  AAAAAATGGCCAGGTATCAGCATCTTCATCCCAGATCTCAGCTCCTCTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATGGCCAGGTATCAGCATCTTCATCCCAGATCTCAGCTCCTCTAG  561

seq1  AACCAAGAGCCAACCATGGCGGAACAGAGTGTCAGGACCTGTTTGGAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAGAGCCAACCATGGCGGAACAGAGTGTCAGGACCTGTTTGGAATG  611

seq1  TATGCCTTGGTCTCCCTGCACTGCCTCCAAAGAGCTCACTTAAAGAACTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCTTGGTCTCCCTGCACTGCCTCCAAAGAGCTCACTTAAAGAACTT  661

seq1  CCTCAAATATGGACAGAAGGGAGTAGAAGGTAATGGTGCCCAGAGATAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAATATGGACAGAAGGGAGTAGAAGGTAATGGTGCCCAGAGATAAG  711

seq1  CATGCTCCTACATACAGTGACTTCTAATAGTTATTCTGTGATCCTGTCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTCCTACATACAGTGACTTCTAATAGTTATTCTGTGATCCTGTCTC  761

seq1  CTAACACACCAGGCCAGCCAAAAGGTTCCATCATGAGCACAGAATCAATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACACACCAGGCCAGCCAAAAGGTTCCATCATGAGCACAGAATCAATT  811

seq1  AGTAATGTCTGCATGGGACACTATGTTGAATTCTACTGCTACATGCGTGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATGTCTGCATGGGACACTATGTTGAATTCTACTGCTACATGCGTGC  861

seq1  TGCAATTGATTGGTGATGCCTACCATGGTCAGGGATATTCCCCATAGATC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATTGATTGGTGATGCCTACCATGGTCAGGGATATTCCCCATAGATC  911

seq1  ATCTATAATGCTAATCACTTTCTCCTGAAGCAGAAAGGGAGGCCCTCAGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATAATGCTAATCACTTTCTCCTGAAGCAGAAAGGGAGGCCCTCAGA  961

seq1  ACTTTAAAAATTACCTTCTGGATGGTCATTCCCTGTTTGGCCCTTTTCTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAAAAATTACCTTCTGGATGGTCATTCCCTGTTTGGCCCTTTTCTG  1011

seq1  AAGATGTTAATATTGGTTATAGTAAAAAAAAAAAAAAAACTGTCTAAAGT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGTTAATATTGGTTATAGTAAAAAAAAAAAAAAAACTGTCTAAAGT  1061

seq1  AGAAACACAGTACTGAATTAATTTCTCCTCCATAGAAAGGGCTAAATGTT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACACAGTACTGAATTAATTTCTCCTCCATAGAAAGGGCTAAATGTT  1111

seq1  TTCTTCCTTGTTGGGGATTCAAAAGGTGGTCTTGTTGTCACTGAAAGGTT  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCTTGTTGGGGATTCAAAAGGTGGTCTTGTTGTCACTGAAAGGTT  1161

seq1  CCTTAGACCCATGAAGAATTC  1221
      |||||||||||||||||||||
seq2  CCTTAGACCCATGAAGAATTC  1182

seq1: chr5_142899774_142900932
seq2: B6Ng01-162I02.g_70_1232

seq1  GAATTCCATGCTCTCTGTCATGTGCTGTATCTCGTCAGCATATTCATATA  50
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GAATTCCATGCTCTCTGTCATGTGCTGTATCTCATCAGCATATTCATATA  50

seq1  TGCAAATTAACATACATGTGGGTGCAGTATGACAAGGAGAAAAAAGAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAATTAACATACATGTGGGTGCAGTATGACAAGGAGAAAAAAGAACA  100

seq1  AGAAAGGCTGAGCATAAGGGGACAGGGAGGGACAGGATGACAGTCCTGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGCTGAGCATAAGGGGACAGGGAGGGACAGGATGACAGTCCTGGG  150

seq1  CGGTGGTCCTGGGCAGAAGCAGTCAGCTGTCACACAGTACTTGGGAGTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGGTCCTGGGCAGAAGCAGTCAGCTGTCACACAGTACTTGGGAGTTC  200

seq1  ATGTTTTCTTTTTTCCGATAGGGTCTCATGTAGCCCAAGCTGGCCTTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTTCTTTTTTCCGATAGGGTCTCATGTAGCCCAAGCTGGCCTTGAA  250

seq1  CTTGCTGTGTTGTCAAAGGATGACTTTATAAACATTTGGTCTTCCTGCGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTGTGTTGTCAAAGGATGACTTTATAAACATTTGGTCTTCCTGCGT  300

seq1  CCACCTCCCAAATGCTGTGGTCACAGGTATACGGACAGCTTTCCCCTGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTCCCAAATGCTGTGGTCACAGGTATACGGACAGCTTTCCCCTGGC  350

seq1  TTTTATGTGAGCATTTGCTGTCTGTGACTCAGTTTCCCTCTTTTGAAACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGTGAGCATTTGCTGTCTGTGACTCAGTTTCCCTCTTTTGAAACC  400

seq1  TGGAACGTGATGGAAGCTGGTTGCTGCTTTCCCCCTTTCCGAAAGATACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACGTGATGGAAGCTGGTTGCTGCTTTCCCCCTTTCCGAAAGATACA  450

seq1  CTTGGTCCTTGCTTTTCACCGAGGCAGGAAATCAAAGAAGGATCTTGGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTCCTTGCTTTTCACCGAGGCAGGAAATCAAAGAAGGATCTTGGGA  500

seq1  CTGGGGAGGTGTTGCAGTGGGGAGCTGTGTTTGAGTCCTCGGTATCCATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGAGGTGTTGCAGTGGGGAGCTGTGTTTGAGTCCTCGGTATCCATC  550

seq1  CAGTGTAAAAGCTAGACCTGGTTGCACGGACCTGTACCTCAGCCACGTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTAAAAGCTAGACCTGGTTGCACGGACCTGTACCTCAGCCACGTGG  600

seq1  GCAGTTGAAACAAGATTGCTGGCTGCTAGCATAGCTCCAGGTTCTCTGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTGAAACAAGATTGCTGGCTGCTAGCATAGCTCCAGGTTCTCTGAG  650

seq1  AGACCCTGTCTCCCGGGAATAAGGGAGTGCTGAAGCAGGACACCCATTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCTGTCTCCCGGGAATAAGGGAGTGCTGAAGCAGGACACCCATTAT  700

seq1  CCCCCTCCCATCTCCTGCACACATGTGTGCACACACCACGTACATGTATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTCCCATCTCCTGCACACATGTGTGCACACACCACGTACATGTATG  750

seq1  TGCAGATATACACACGGACCTCAGAAGCTTTGGCTCACCCAAGACAACAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGATATACACACGGACCTCAGAAGCTTTGGCTCACCCAAGACAACAG  800

seq1  GTCCTGTCTCTGCTGGTGTGCAGCGAAGGGATGAGATTCGTTTCCATGAA  850
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GTCCTGTCTCTGCTGGTGTGCAGCGAAGGGATGAGATTCG-TTCCATGAA  849

seq1  ATGAAACTCACTTCCTTATTGTTGGTGGCCCTCCGCCAGC-AGGGTGATG  899
      |||||||||||||||||||||||||||||||||||||||| ||| |||||
seq2  ATGAAACTCACTTCCTTATTGTTGGTGGCCCTCCGCCAGCAAGGTTGATG  899

seq1  CTGCC-TCCCAGGAATACGGTTGCTCTCTCTCTTTGCTTCCTGGCCTCGA  948
      ||||| ||||||||||||||||||||||||||||||||| ||||||||||
seq2  CTGCCTTCCCAGGAATACGGTTGCTCTCTCTCTTTGCTT-CTGGCCTCGA  948

seq1  CTTCTTCCGTGCTGTGGACTTAGCCAACTGTACCTACTGATGCCAG-ATA  997
      ||||||||||||||||||| |||||||||||| ||||||||||||| |||
seq2  CTTCTTCCGTGCTGTGGAC-TAGCCAACTGTA-CTACTGATGCCAGAATA  996

seq1  GGACTAGGTGGGGCTGTAAGAG-ACTGGGAGCTGCCCGTCACAGCCGGCC  1046
      |||||||||||||||||||||| | |||||||||||||||||||||||||
seq2  GGACTAGGTGGGGCTGTAAGAGAATTGGGAGCTGCCCGTCACAGCCGGCC  1046

seq1  CTG-TCCCACCCACCTGGGTTGCAGCTCCT-GGGCTGGGCTGGGCCAAGT  1094
      ||| ||||||||||  |||||||| ||||| ||||||| |||||||||||
seq2  CTGTTCCCACCCACTGGGGTTGCACCTCCTGGGGCTGGCCTGGGCCAAGT  1096

seq1  TTGGGCTC-TGGGTAGTTT-GTTAGGTCTGGCTGGCCTCTC-CTTATTAG  1141
       ||| ||| |||||||||| ||||||| |||||| |||||| |||  |||
seq2  ATGGCCTCTTGGGTAGTTTGGTTAGGTTTGGCTGCCCTCTCTCTTTATAG  1146

seq1  GAAGGCAAGCTTGGTTGG  1159
      | | |||||||| |||||
seq2  G-ATGCAAGCTTTGTTGG  1163