BAC Information

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BAC

Clone NameB6Ng01-162J21
Chromosome5 (Build37)
Map Location 78,567,118 - 78,568,305
singlet/doubletsinglet
Overlap genenone
Upstream geneSpink2, Rest, 2610024G14Rik, Polr2b, Igfbp7, Pea15b, LOC669227
Downstream geneLOC100039398, Mthfr-ps1, EG384187
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162J21.bB6Ng01-162J21.g
ACCDH955411DH955412
length1,1881,178
definitionDH955411|Mus musculus domesticus DNA, BAC clone: B6Ng01-162J21, 5' end.DH955412|Mus musculus domesticus DNA, BAC clone: B6Ng01-162J21, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccaaaatttttaaagctgaaatataatctaaacaaaacaacacgt
atgtacatagtctacagttttatattaaatgtgatcctcaatggactcca
tgcaaggatatggctgtctgcaagtcctactgggagacagagcaccttta
tgaattgggccatgctagaggaggctgagttgttggggggtatatccttg
aaaggatattgagatacctcttccccaaattgactctttttctgcttctt
ggttgccataaagtaaacagctttgttcctccatactcctcttgccttga
tattctgacacacgaatgatgcaagatccaggtggccatggatgaacctc
tgaaactgatcaacatagtgcaccttttctgtttataagtgttttgtctc
aggaatcgccacagtttcagaatgctgatggatagaataatacaattgag
atcagagacagcagaaaggagaaaagtaaaacccataagagacaaaaact
ggggaagtagctctataaaaacccaataggaaatgaaaaaaaaaattgtc
caaggaataatttaaaagagaaaacaagtagttgaaatagtgggcaaaaa
ttgtattataatgttgtcatatcagtttaacttagaataaattaaatgtt
aaatgaaaaaagttcagaatctaataagctaggaaagattgaaaatgatt
atcaatattagctcagtcctagaaaaaggaacactttataaatactgtga
gaattaaggatcatctggaaaacaattggtaatatgaaccaaagaattca
gaatattttatccttaatgtaaaacatgtatcttctcagaaaataaatta
tgctctatagtgaaagtatgaattatatagtcaagctaccacatatcaaa
acaaaaaaagaaaaagaacttaactaaatttctttgtgagggaatagaga
aactacatataagcaagatatgggctctgtgaaacagtggctagacagct
atataaccaattgccctttgaactggatttgaggcttactccattgagta
gggatcatggctgcactgaaagtacaagcttaacaacttagcttttggag
ctataacagccgaaaatagagtggcctaatattgattgttcataaacctg
aacatagcagcactgtttcctgtaacctatggtctaac
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaagaaccctgagat
tccacctcacaccagtcagaatggctaagatcagaaattcaggtgacagc
agatgctggcgaggatgtggagaaaggggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggtggttcctca
gaaaattggacatagtactaccagaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcggccttatttataatagcccgaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggtcctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtattcactgataagtggatattagcccaaaacc
taggatacccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagagacaaagtttggagctgagatga
aaggatgggaccatgttgagactgccatatccagggatccaccccataat
cagcatccaaacgctgacaccattgcatacactagcaagattttatcgaa
agggacccagatgtagctgtctcttgtgagactatgccggggcctagcaa
acacagaagtggttgctcacagtcagctaatggatgggatacagggctcc
aatggaggagctagtgaaaagaacccaagagctaacgggatctgcaccct
atagggtgtacacattatgaactaacagtacccggagcctctttgactct
agctgcatatgttcaaaaatggcctagtaggcatcactgggaagaagagg
tccaatggaacgtctactttatatgcctcagtacatggtactgcaggtca
aaaggggagacttgggcgggatggcaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_78567118_78568305
seq2: B6Ng01-162J21.b_46_1233 (reverse)

seq1  GTTAGA-CATAAGTATACA-GAAACAGTTTGCTGCTATG-TCAGTTTATT  47
      |||||| |||| || |||| |||||||  |||||||||| |||| ||  |
seq2  GTTAGACCATAGGT-TACAGGAAACAG--TGCTGCTATGTTCAGGTTTAT  47

seq1  GAACCATCAATAATAAG-CACTCTATTTCGGCCTGTTATAGCTCC-AAAG  95
      |||| ||||||| || | ||||||||||  | ||||||||||||| ||||
seq2  GAACAATCAATATTAGGCCACTCTATTTTCGGCTGTTATAGCTCCAAAAG  97

seq1  CTAAGTTGTT-AGC-TGTACTTTCAGTGCCAGGCATTGAACCCTACCTCC  143
      |||||||||| ||| ||||||||||||| ||| || ||| ||||| ||| 
seq2  CTAAGTTGTTAAGCTTGTACTTTCAGTG-CAGCCA-TGATCCCTA-CTCA  144

seq1  ATGGAGTAAGCCTCAAATCCAGTTC-AAGGGCAATTGGTTATATAGCTGT  192
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ATGGAGTAAGCCTCAAATCCAGTTCAAAGGGCAATTGGTTATATAGCTGT  194

seq1  CTAGCCACTGTTTCACAGAGGCCATATCTTGCCTTATATGTAGTTTCTCT  242
      |||||||||||||||||||| |||||||||| ||||||||||||||||||
seq2  CTAGCCACTGTTTCACAGAGCCCATATCTTG-CTTATATGTAGTTTCTCT  243

seq1  ATTCCCTCACAAAGAAATTTAGTTAAGTTTCTTTTTCTTTTTTTGTTTTG  292
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ATTCCCTCACAAAGAAATTTAGTTAAG-TTCTTTTTCTTTTTTTGTTTTG  292

seq1  ATATGTGGTAGCTTGACTATATAATTCATACTTTCACTATAGAGCATAAT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTGGTAGCTTGACTATATAATTCATACTTTCACTATAGAGCATAAT  342

seq1  TTATTTTCTGAGAAGATACATGTTTTACATTAAGGATAAAATATTCTGAA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTCTGAGAAGATACATGTTTTACATTAAGGATAAAATATTCTGAA  392

seq1  TTCTTTGGTTCATATTACCAATTGTTTTCCAGATGATCCTTAATTCTCAC  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGGTTCATATTACCAATTGTTTTCCAGATGATCCTTAATTCTCAC  442

seq1  AGTATTTATAAAGTGTTCCTTTTTCTAGGACTGAGCTAATATTGATAATC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTATAAAGTGTTCCTTTTTCTAGGACTGAGCTAATATTGATAATC  492

seq1  ATTTTCAATCTTTCCTAGCTTATTAGATTCTGAACTTTTTTCATTTAACA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCAATCTTTCCTAGCTTATTAGATTCTGAACTTTTTTCATTTAACA  542

seq1  TTTAATTTATTCTAAGTTAAACTGATATGACAACATTATAATACAATTTT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTTATTCTAAGTTAAACTGATATGACAACATTATAATACAATTTT  592

seq1  TGCCCACTATTTCAACTACTTGTTTTCTCTTTTAAATTATTCCTTGGACA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCACTATTTCAACTACTTGTTTTCTCTTTTAAATTATTCCTTGGACA  642

seq1  ATTTTTTTTTTCATTTCCTATTGGGTTTTTATAGAGCTACTTCCCCAGTT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTTTTCATTTCCTATTGGGTTTTTATAGAGCTACTTCCCCAGTT  692

seq1  TTTGTCTCTTATGGGTTTTACTTTTCTCCTTTCTGCTGTCTCTGATCTCA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTCTTATGGGTTTTACTTTTCTCCTTTCTGCTGTCTCTGATCTCA  742

seq1  ATTGTATTATTCTATCCATCAGCATTCTGAAACTGTGGCGATTCCTGAGA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTATTATTCTATCCATCAGCATTCTGAAACTGTGGCGATTCCTGAGA  792

seq1  CAAAACACTTATAAACAGAAAAGGTGCACTATGTTGATCAGTTTCAGAGG  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACACTTATAAACAGAAAAGGTGCACTATGTTGATCAGTTTCAGAGG  842

seq1  TTCATCCATGGCCACCTGGATCTTGCATCATTCGTGTGTCAGAATATCAA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCCATGGCCACCTGGATCTTGCATCATTCGTGTGTCAGAATATCAA  892

seq1  GGCAAGAGGAGTATGGAGGAACAAAGCTGTTTACTTTATGGCAACCAAGA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGAGGAGTATGGAGGAACAAAGCTGTTTACTTTATGGCAACCAAGA  942

seq1  AGCAGAAAAAGAGTCAATTTGGGGAAGAGGTATCTCAATATCCTTTCAAG  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAAAAAGAGTCAATTTGGGGAAGAGGTATCTCAATATCCTTTCAAG  992

seq1  GATATACCCCCCAACAACTCAGCCTCCTCTAGCATGGCCCAATTCATAAA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATACCCCCCAACAACTCAGCCTCCTCTAGCATGGCCCAATTCATAAA  1042

seq1  GGTGCTCTGTCTCCCAGTAGGACTTGCAGACAGCCATATCCTTGCATGGA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTCTGTCTCCCAGTAGGACTTGCAGACAGCCATATCCTTGCATGGA  1092

seq1  GTCCATTGAGGATCACATTTAATATAAAACTGTAGACTATGTACATACGT  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATTGAGGATCACATTTAATATAAAACTGTAGACTATGTACATACGT  1142

seq1  GTTGTTTTGTTTAGATTATATTTCAGCTTTAAAAATTTTGGAATTC  1188
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTTTGTTTAGATTATATTTCAGCTTTAAAAATTTTGGAATTC  1188