BAC Information

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BAC

Clone NameB6Ng01-162K03
Chromosome5 (Build37)
Map Location 16,347,889 - 16,349,114
singlet/doubletsinglet
Overlap genenone
Upstream gene4930519H02Rik, LOC100041781, Cacna2d1, LOC668121, Hgf, EG668131
Downstream geneLOC626390, LOC668142, LOC100041749, LOC100041832, Speer4f, EG630927, Sema3c, Cd36
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162K03.bB6Ng01-162K03.g
ACCDH955423DH955424
length1,2491,207
definitionDH955423|Mus musculus domesticus DNA, BAC clone: B6Ng01-162K03, 5' end.DH955424|Mus musculus domesticus DNA, BAC clone: B6Ng01-162K03, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcattgtttttaatagctgagtagtactccattgtataaatgtacc
acattttctgtattcattcttctgttgagggaaatctgagttctttccag
cttctggctattataaataaggctgctatgaacatagttgagcatgtttc
ttcttaccggttgtaacatcttctgggtatatgcccaggagaggtattgc
tggatcttcaggtaggactatgtccaggtttctgaggaatcgccagactg
atttccagagtagctgtaccagtttgcaatctcatcaacaatggatgagt
gtccctctttccccacatcctcaccagcatctgctgtcacctgaattttt
gatcctagccattctgactggtttgaggtggaatctcatgtttgttttga
tttgcatttccctgataattaaggatgttgaacattttttcaggtgcttc
tcagccattcggcattcctctggtgagaaatctttgtttagctctgtact
ccattttttaatggggttatttgattttctggagtccaccttcttgagtt
ctttatatatattggatattagtcccctatctgatttaggattggtaaag
atccctccccaatctgttggcagcctttttgttttattgacagtgtcttt
tgccttacagaaactttgcaattttatgaggtcccatttgtcaattcttg
atcttacagcacaagccagtgctgttctgttcaggaatttttttctcctg
tgcccatatctacgaggcttttcccactttctcctctataagtttcagtg
tctctttttatatggagttccttgatccacttagacttgactttagtaca
ggagataagaatggatcaattcgaatttttctacatgataaccaccagtt
gtgccagcaccatttgttgaaaatgctgtctttttccactggatggttta
gctcccttgtcatcagatcatgtggaccatagtgtgtggcttcaattttg
ggtcttcaattctatttcatagtctacctgtctgttgcagtaccagaacc
atgcagttttaccacaattatctctgtagaaatagcttgaggtgagagca
tgtggaatcctcccaaggttcttatatgtttgaataatttgctatctagt
tggtaatccgatgaaattgcagatgtctttatcatgcagaatggagttgc
acttacggatatgaatggaatgctatcgagcccattacatagagtcgtc
gaattctacctacatttgctgatggaataacttagggagggatttgatgt
tcatctttgtatcataattttattttaagtaaccatcaaattctgcctta
tgttattgatacatatagataaaacgtacatgcatatatctctccataca
ttattatgtgtaatccaaaaaacacattgacttatatatgataaacttca
gatattataacttgaacgatagtcttcctataaaaataaaaggtgcaaat
taagaagaatattcatctgaggcagttgtgtttataaaccacaatattgg
tataaaaatcccaacatgggaatattttagaactactccaatattttagc
atcattttaatggctttctaagaacatcattatggttgtacttatgtttg
ttaaaatcatattacattttattagaaatagtgtagattactctgtgttg
caattattcagtaatactagaaaattatcaactagttagaaaaatcatac
tctctcaacaaaaaagttagatgatcaaaagtggtatcaatagtctttga
gaacaaatttcttaaatgaatgtttgtgcttttatagagctatataaata
atgatactttactctcaaagcatgggaataggaagttgttgggccctact
ttgccttggtttgggccttgtagacaaaccggagcctggctcgattttcg
agacctgtcatttgcttgagaataactcagcacaacctaccaacataaat
gagactgcctctgcctagctaccactgatgtatcaatttcttagaggcac
cgtgaaatcaccccacgcccctctcatctcacaccaccctcataagtcat
ctcacctcatacccttatccatacctccttgccttctctatataagcaag
tgtctagtttaataaagtgagttcctactttgacagactccctgtccagt
gcattgacactcgctatcctgccagcaaagagccacagatgataggaata
gtttgtgagatgcatttggagggatactattagaaaccaggaaaagtctt
gcagtttgttaaatgcactagacatgtagtgttacaaataggcataaaat
atgcctcactatactagtaccaaggtttatttggcttgtgtcaaatcgat
ttgttagattttgaggctgtttttagcattgactagattgagtcttatat
aattttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_16347889_16349114
seq2: B6Ng01-162K03.g_68_1274 (reverse)

seq1  AAAAATTATATAAAGAACATCAATCTCTAAGTCAATGCATAAATAATCAG  50
      ||||||||||| ||||   |||||||   ||||||||| |||  || |||
seq2  AAAAATTATAT-AAGA--CTCAATCT---AGTCAATGC-TAA--AAACAG  41

seq1  CCTTCAAAATACCTAACATATCTGATTTTGACACAGGCAAAATAAACTTT  100
      || |||||||  |||||| ||| || ||||||||| || |||||||| ||
seq2  CC-TCAAAAT--CTAACAAATC-GA-TTTGACACAAGCCAAATAAACCTT  86

seq1  GTTACTAGTATAGTGAGCCATATTTTATGCTTATTTGTAACACTACATGG  150
      | ||||||||||||||| |||||||||||| ||||||||||||||||| |
seq2  GGTACTAGTATAGTGAGGCATATTTTATGCCTATTTGTAACACTACAT-G  135

seq1  TCTAGTGCATTTAACATACTGC-AGACTTTTTCTGGTTTCTAATAGTATC  199
      |||||||||||||||| ||||| |||||||| ||||||||||||||||||
seq2  TCTAGTGCATTTAACAAACTGCAAGACTTTTCCTGGTTTCTAATAGTATC  185

seq1  CCTCCAAATGCATTCTCACAAACTTATTCCTATCATTCTGTTGGCTCTTT  249
      |||||||||||| |||||||||| ||||||||||| |||| |||||||||
seq2  CCTCCAAATGCA-TCTCACAAAC-TATTCCTATCA-TCTG-TGGCTCTTT  231

seq1  GCTGGCAGGATAGCGAGTGTCAATGCACTGGACAGGGAGTCTTGTCAAAG  299
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GCTGGCAGGATAGCGAGTGTCAATGCACTGGACAGGGAGTC-TGTCAAAG  280

seq1  TAGGAACTCACTTTATTAAACTAGACACTTGCTTATATAGAGAAGGCAAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAACTCACTTTATTAAACTAGACACTTGCTTATATAGAGAAGGCAAG  330

seq1  GAGGTATGGATAAGGGTATGAGGTGAGATGACTTATGAGGGTGGTGTGAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTATGGATAAGGGTATGAGGTGAGATGACTTATGAGGGTGGTGTGAG  380

seq1  ATGAGAGGGGCGTGGGGTGATTTCACGGTGCCTCTAAGAAATTGATACAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAGGGGCGTGGGGTGATTTCACGGTGCCTCTAAGAAATTGATACAT  430

seq1  CAGTGGTAGCTAGGCAGAGGCAGTCTCATTTATGTTGGTAGGTTGTGCTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGTAGCTAGGCAGAGGCAGTCTCATTTATGTTGGTAGGTTGTGCTG  480

seq1  AGTTATTCTCAAGCAAATGACAGGTCTCGAAAATCGAGCCAGGCTCCGGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATTCTCAAGCAAATGACAGGTCTCGAAAATCGAGCCAGGCTCCGGT  530

seq1  TTGTCTACAAGGCCCAAACCAAGGCAAAGTAGGGCCCAACAACTTCCTAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTACAAGGCCCAAACCAAGGCAAAGTAGGGCCCAACAACTTCCTAT  580

seq1  TCCCATGCTTTGAGAGTAAAGTATCATTATTTATATAGCTCTATAAAAGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATGCTTTGAGAGTAAAGTATCATTATTTATATAGCTCTATAAAAGC  630

seq1  ACAAACATTCATTTAAGAAATTTGTTCTCAAAGACTATTGATACCACTTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACATTCATTTAAGAAATTTGTTCTCAAAGACTATTGATACCACTTT  680

seq1  TGATCATCTAACTTTTTTGTTGAGAGAGTATGATTTTTCTAACTAGTTGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCATCTAACTTTTTTGTTGAGAGAGTATGATTTTTCTAACTAGTTGA  730

seq1  TAATTTTCTAGTATTACTGAATAATTGCAACACAGAGTAATCTACACTAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTCTAGTATTACTGAATAATTGCAACACAGAGTAATCTACACTAT  780

seq1  TTCTAATAAAATGTAATATGATTTTAACAAACATAAGTACAACCATAATG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAATAAAATGTAATATGATTTTAACAAACATAAGTACAACCATAATG  830

seq1  ATGTTCTTAGAAAGCCATTAAAATGATGCTAAAATATTGGAGTAGTTCTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCTTAGAAAGCCATTAAAATGATGCTAAAATATTGGAGTAGTTCTA  880

seq1  AAATATTCCCATGTTGGGATTTTTATACCAATATTGTGGTTTATAAACAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTCCCATGTTGGGATTTTTATACCAATATTGTGGTTTATAAACAC  930

seq1  AACTGCCTCAGATGAATATTCTTCTTAATTTGCACCTTTTATTTTTATAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCCTCAGATGAATATTCTTCTTAATTTGCACCTTTTATTTTTATAG  980

seq1  GAAGACTATCGTTCAAGTTATAATATCTGAAGTTTATCATATATAAGTCA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACTATCGTTCAAGTTATAATATCTGAAGTTTATCATATATAAGTCA  1030

seq1  ATGTGTTTTTTGGATTACACATAATAATGTATGGAGAGATATATGCATGT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTTTTTTGGATTACACATAATAATGTATGGAGAGATATATGCATGT  1080

seq1  ACGTTTTATCTATATGTATCAATAACATAAGGCAGAATTTGATGGTTACT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTTTATCTATATGTATCAATAACATAAGGCAGAATTTGATGGTTACT  1130

seq1  TAAAATAAAATTATGATACAAAGATGAACATCAAATCCCTCCCTAAGTTA  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAAAATTATGATACAAAGATGAACATCAAATCCCTCCCTAAGTTA  1180

seq1  TTCCATCAGCAAATGTAGGTAGAATTC  1226
      |||||||||||||||||||||||||||
seq2  TTCCATCAGCAAATGTAGGTAGAATTC  1207