BAC Information

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BAC

Clone NameB6Ng01-162N07
Chromosome5 (Build37)
Map Location 146,007,487 - 146,128,366
singlet/doubletdoublet
Overlap geneZfp655, LOC677270, EG666311, EG622127
Upstream geneBri3, Baiap2l1, 4930568B11Rik, Nptx2, EG621967, Tmem130, LOC100039427, Trrap, Smurf1, AW146299, EG231885, EG666992, 1700018F24Rik, Arpc1a, Arpc1b, Pdap1, Bud31, Ptcd1, Cpsf4, Atp5j2, Zkscan14, Zkscan5, EG622116
Downstream geneLOC100039566, Cyp3a16, LOC100041375, LOC667065, Cyp3a41, Cyp3a44, Cyp3a11, Cyp3a25, LOC667098, LOC667104, LOC100041449, LOC433961, EG622306, 1700001J03Rik, LOC667121, Rnf6, Cdk8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162N07.bB6Ng01-162N07.g
ACCDH955569DH955570
length1,1991,076
definitionDH955569|Mus musculus domesticus DNA, BAC clone: B6Ng01-162N07, 5' end.DH955570|Mus musculus domesticus DNA, BAC clone: B6Ng01-162N07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(146,007,487 - 146,008,665)(146,127,489 - 146,128,366)
sequence
gaattcctgggttcacacaatttcctgcctcccaaatagctgggattata
ggcatgcgctcctgtgcctggattttatttttgtattttaatagaatctg
caggccatataaaggatcatggctcttttgatttacagaagtggtcacag
gtgttgagtccagggtccctgcccgatgccacagagttcatgatttttta
catgatgtgaagcattttcatcttaaaatttgtaacatcttgtgaataag
aaaagtgttatttcaaattctagttgtcaatcaagcagttgaggctttca
tagttcagatgtcataatgttcactagggatcctcaaccagtatataaaa
tatgctgctcactgtaaatcttgtggctgacctctagggtagtcccacca
ctgtattttacttctttgccatcagcaagcgtagtgtctcatcaggacaa
gaaaatcaacatatatcaaattgatctaaatgtaaaagcaaatgaaaaat
gcatggttttttgtccctgtcgaacatgtatattcttacttatagagacc
aatagtcacttccagtgactgaggcagaggatttgattcattcctaagta
gcagaatctgtaaaaaccccacgtatgcatttgggtttggaacgtgcttt
tgtacttctacttgaataaaggtgtgttcagtgctcgtagactctttgtt
ttgagccaagtctgcaggtcccaggcagaaagaagcactgggcaccttgg
gactcttcaccatgcctgcctctagctcctctgcgatactcacaagagtg
gttcgctctctactgatgcctagcttgcctttccgtagtcctctgcagcc
agttaggattgagtagttttgtattttagatttatttattctaaatgttt
atgagtgttttggctgcatatgtatgtacattatgtgcgtgcctggagtc
catagaagctagaagaggacatcaagtcccctgaaaaaaagatttgagcc
accatgtgggttctaagaatcacttccatttttctgcagagaagaataat
ggtccattacctgctggaaactagcctcctctaagccccagagattgaat
gttgggtcagtttgggataggctttagtactataaaaccaagaaatttgt
agttttcggtgagacctatgagaaaggtattttgggtagggaagtaaaa
gaattcacttgttgtacagaatcagttattaataagatatgaccctagaa
gacagaaaggcattgtgatctctggaagaaaatgtagaatgagaaaaggt
ttcatacaaataggtcaataggcaaaaaaaattagatttatctactttgt
gtgtgtgttttcctacatgtgtgtctatgcactacatgtttatggtgttc
tcagaggccagatcagggcattgaatccctgaagctggagttgcagatag
ttgtaaatagtcacatgggttctggggattaaacctgggtccttaggaag
aaactccagtactcttatccactaagctatctcttcagcctctaaacaga
ttttgagagtgctacaagaattctttagagggaacagttttccctaaatg
atacacaaacaactggacatggatggtacaacataagactttacctgcat
cttatactttatagcccaagtacaaatacatcatacatgttactgtaaag
tataaaactatgtgcatattttgtttaaaagagagaagattgctaggcat
ggctgaggatgcagctcagttggcagagtgcttgtctggcatacatgaag
catttggcttgatcctcggcactgcgtaaatcaggtggggtggcacatac
tgggaatcccagcacttgagaagtttaaggctgaggcagggtcacatgaa
actttattcaaagaagagtactgaacaaaatataatcagacttgactcca
aaggcacatctataaaaagaaagtggatcagactctgtgaggaattaaaa
aaaaaaaaacaggctatacatggccattagaacataagcactagagaaag
ctcattgacaaataaggaaattttcttgaataaggaaatttccaactcag
attggccggaaggcatgtatgtggagaattgtcttggttagtaactgatg
tacttagggcagtactattccctaggccctgtggtttataggaagccagc
tttagcatgagtctgagcaagccagtaggcagcctgtcttcatggatttt
tttttcctacaagctcctgcttgagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_146007487_146008665
seq2: B6Ng01-162N07.b_46_1244

seq1  GAATTCCTGGGTTCACACAATTTCCTGCCTCCCAAATAGCTGGGATTATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGGTTCACACAATTTCCTGCCTCCCAAATAGCTGGGATTATA  50

seq1  GGCATGCGCTCCTGTGCCTGGATTTTATTTTTGTATTTTAATAGAATCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGCGCTCCTGTGCCTGGATTTTATTTTTGTATTTTAATAGAATCTG  100

seq1  CAGGCCATATAAAGGATCATGGCTCTTTTGATTTACAGAAGTGGTCACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCATATAAAGGATCATGGCTCTTTTGATTTACAGAAGTGGTCACAG  150

seq1  GTGTTGAGTCCAGGGTCCCTGCCCGATGCCACAGAGTTCATGATTTTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGAGTCCAGGGTCCCTGCCCGATGCCACAGAGTTCATGATTTTTTA  200

seq1  CATGATGTGAAGCATTTTCATCTTAAAATTTGTAACATCTTGTGAATAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATGTGAAGCATTTTCATCTTAAAATTTGTAACATCTTGTGAATAAG  250

seq1  AAAAGTGTTATTTCAAATTCTAGTTGTCAATCAAGCAGTTGAGGCTTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTGTTATTTCAAATTCTAGTTGTCAATCAAGCAGTTGAGGCTTTCA  300

seq1  TAGTTCAGATGTCATAATGTTCACTAGGGATCCTCAACCAGTATATAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCAGATGTCATAATGTTCACTAGGGATCCTCAACCAGTATATAAAA  350

seq1  TATGCTGCTCACTGTAAATCTTGTGGCTGACCTCTAGGGTAGTCCCACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTGCTCACTGTAAATCTTGTGGCTGACCTCTAGGGTAGTCCCACCA  400

seq1  CTGTATTTTACTTCTTTGCCATCAGCAAGCGTAGTGTCTCATCAGGACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATTTTACTTCTTTGCCATCAGCAAGCGTAGTGTCTCATCAGGACAA  450

seq1  GAAAATCAACATATATCAAATTGATCTAAATGTAAAAGCAAATGAAAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATCAACATATATCAAATTGATCTAAATGTAAAAGCAAATGAAAAAT  500

seq1  GCATGGTTTTTTGTCCCTGTCGAACATGTATATTCTTACTTATAGAGACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGTTTTTTGTCCCTGTCGAACATGTATATTCTTACTTATAGAGACC  550

seq1  AATAGTCACTTCCAGTGACTGAGGCAGAGGATTTGATTCATTCCTAAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTCACTTCCAGTGACTGAGGCAGAGGATTTGATTCATTCCTAAGTA  600

seq1  GCAGAATCTGTAAAAACCCCACGTATGCATTTGGGTTTGGAACGTGCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAATCTGTAAAAACCCCACGTATGCATTTGGGTTTGGAACGTGCTTT  650

seq1  TGTACTTCTACTTGAATAAAGGTGTGTTCAGTGCTCGTAGACTCTTTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTTCTACTTGAATAAAGGTGTGTTCAGTGCTCGTAGACTCTTTGTT  700

seq1  TTGAGCCAAGTCTGCAGGTCCCAGGCAGAAAGAAGCACTGGGCACCTTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCCAAGTCTGCAGGTCCCAGGCAGAAAGAAGCACTGGGCACCTTGG  750

seq1  GACTCTTCACCATGCCTGCCTCTAGCTCCTCTGCGATACTCACAAGAGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTTCACCATGCCTGCCTCTAGCTCCTCTGCGATACTCACAAGAGTG  800

seq1  GTTCGCTCTCTACTGATGCCTAGCTTGCCTTTCCGTAGTCCTCTGCAGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCGCTCTCTACTGATGCCTAGCTTGCCTTTCCGTAGTCCTCTGCAGCC  850

seq1  AGTTAGGATTGAGTAGTTTTGTATTTTAGATTTATTTATTCTAAATGTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGGATTGAGTAGTTTTGTATTTTAGATTTATTTATTCTAAATGTTT  900

seq1  ATGAGTGTTTTGGCTGCATATGTATGTACATTATGTGCGTGCCTGGAGTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTGTTTTGGCTGCATATGTATGTACATTATGTGCGTGCCTGGAGTC  950

seq1  CATAGAAGCTAGAAGAGGACATCAAGTCCCCTGAAAAAAAGATTTGAGCC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGAAGCTAGAAGAGGACATCAAGTCCCCTGAAAAAAAGATTTGAGCC  1000

seq1  ACCATGTGGGTTCT-AGAATCAC-TCCA-TTCTCTGCAAGAGAAG-ACAA  1046
      |||||||||||||| |||||||| |||| || ||||| ||||||| | ||
seq2  ACCATGTGGGTTCTAAGAATCACTTCCATTTTTCTGC-AGAGAAGAATAA  1049

seq1  TGTTC--ATAACTGCTG--AACCAGC--TCTCT-AGCCCCAG-GATTGAA  1088
      || ||   || ||||||  ||| |||   |||| |||||||| |||||||
seq2  TGGTCCATTACCTGCTGGAAACTAGCCTCCTCTAAGCCCCAGAGATTGAA  1099

seq1  TGTTGGTTCAG-TTGGGAT--GCTTCAGTAC-ATAAAATCAA-ACATTTG  1133
      |||||| |||| |||||||  |||| ||||| |||||| ||| | |||||
seq2  TGTTGGGTCAGTTTGGGATAGGCTTTAGTACTATAAAACCAAGAAATTTG  1149

seq1  TAG-TTTCGGT-AGAGCTATGAGAA---TGTTTTGGGTAGGTAAAGTAAA  1178
      ||| ||||||| ||| |||||||||   | |||||||||||  |||||||
seq2  TAGTTTTCGGTGAGACCTATGAGAAAGGTATTTTGGGTAGG-GAAGTAAA  1198

seq1  A  1179
      |
seq2  A  1199

seq1: chr5_146127489_146128366
seq2: B6Ng01-162N07.g_269_1146 (reverse)

seq1  GCTCAAGCAGGAGCTTGAAGGAAAAAAAAAATCCATGAAGAACAGCTGCC  50
      ||||||||||||||||| ||| |||||||||||||||||||   ||||||
seq2  GCTCAAGCAGGAGCTTGTAGG-AAAAAAAAATCCATGAAGACAGGCTGCC  49

seq1  TACTGGCTTGCTCAGACTCATGCT-TAGCTGGCTTCCTTATAAACCACAG  99
      ||||||||||||||||||||||||  ||||||||||| ||||||||||||
seq2  TACTGGCTTGCTCAGACTCATGCTAAAGCTGGCTTCC-TATAAACCACAG  98

seq1  GGCCTAGGG-ATAGTACTGCCCTAAGTACATCAGTTACTAACCAAGACAA  148
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTAGGGAATAGTACTGCCCTAAGTACATCAGTTACTAACCAAGACAA  148

seq1  TTCTCCACATACATGCCTTCCGGCCAATCTGAGTTGGAAATTTCCTTATT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCACATACATGCCTTCCGGCCAATCTGAGTTGGAAATTTCCTTATT  198

seq1  CAAGGAAATTTCCTTATTTGTCATTGAGCTTTCTCTAGTGCTTATGTTCT  248
      |||| |||||||||||||||||| ||||||||||||||||||||||||||
seq2  CAAGAAAATTTCCTTATTTGTCAATGAGCTTTCTCTAGTGCTTATGTTCT  248

seq1  AATGGCCATGTATAGCCTGTTTTTTTTTTTTTAATTCCTCACAGAGTCTG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCCATGTATAGCCTGTTTTTTTTTTTTTAATTCCTCACAGAGTCTG  298

seq1  ATCCACTTTCTTTTTATAGATGTGCCTTTGGAGTCAAGTCTGATTATATT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACTTTCTTTTTATAGATGTGCCTTTGGAGTCAAGTCTGATTATATT  348

seq1  TTGTTCAGTACTCTTCTTTGAATAAAGTTTCATGTGACCCTGCCTCAGCC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCAGTACTCTTCTTTGAATAAAGTTTCATGTGACCCTGCCTCAGCC  398

seq1  TTAAACTTCTCAAGTGCTGGGATTCCCAGTATGTGCCACCCCACCTGATT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACTTCTCAAGTGCTGGGATTCCCAGTATGTGCCACCCCACCTGATT  448

seq1  TACGCAGTGCCGAGGATCAAGCCAAATGCTTCATGTATGCCAGACAAGCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGCAGTGCCGAGGATCAAGCCAAATGCTTCATGTATGCCAGACAAGCA  498

seq1  CTCTGCCAACTGAGCTGCATCCTCAGCCATGCCTAGCAATCTTCTCTCTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCAACTGAGCTGCATCCTCAGCCATGCCTAGCAATCTTCTCTCTT  548

seq1  TTAAACAAAATATGCACATAGTTTTATACTTTACAGTAACATGTATGATG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACAAAATATGCACATAGTTTTATACTTTACAGTAACATGTATGATG  598

seq1  TATTTGTACTTGGGCTATAAAGTATAAGATGCAGGTAAAGTCTTATGTTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTACTTGGGCTATAAAGTATAAGATGCAGGTAAAGTCTTATGTTG  648

seq1  TACCATCCATGTCCAGTTGTTTGTGTATCATTTAGGGAAAACTGTTCCCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATCCATGTCCAGTTGTTTGTGTATCATTTAGGGAAAACTGTTCCCT  698

seq1  CTAAAGAATTCTTGTAGCACTCTCAAAATCTGTTTAGAGGCTGAAGAGAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGAATTCTTGTAGCACTCTCAAAATCTGTTTAGAGGCTGAAGAGAT  748

seq1  AGCTTAGTGGATAAGAGTACTGGAGTTTCTTCCTAAGGACCCAGGTTTAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTAGTGGATAAGAGTACTGGAGTTTCTTCCTAAGGACCCAGGTTTAA  798

seq1  TCCCCAGAACCCATGTGACTATTTACAACTATCTGCAACTCCAGCTTCAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAGAACCCATGTGACTATTTACAACTATCTGCAACTCCAGCTTCAG  848

seq1  GGATTCAATGCCCTGATCTGGCCTCTGAGA  878
      ||||||||||||||||||||||||||||||
seq2  GGATTCAATGCCCTGATCTGGCCTCTGAGA  878