BAC Information

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BAC

Clone NameB6Ng01-162N09
Chromosome5 (Build37)
Map Location 46,556,304 - 46,664,197
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040737, Qdpr, EG624224, Lap3, LOC100040762, Med28, 9630031F12Rik, 9630001P10Rik, 1600023N17Rik, Lcorl, LOC100041576
Downstream geneEG666103
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162N09.bB6Ng01-162N09.g
ACCDH955573DH955574
length1,1971,192
definitionDH955573|Mus musculus domesticus DNA, BAC clone: B6Ng01-162N09, 5' end.DH955574|Mus musculus domesticus DNA, BAC clone: B6Ng01-162N09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,662,997 - 46,664,197)(46,556,304 - 46,557,528)
sequence
gaattcctatgaatggaagaattggtatttttactatatatgaaaataac
tcaatttatgttcagttacttaatcaatttacacagcaaaaataaagcat
aatcgtctgttttatttttcaccttaagtacattttagagaacattcaga
aatttctgccttactcaaaaacataaaactaataaggatccttgctatca
tccattcaatccctacttccagtcaactattggcatcagtgctttttaat
tatataacattttatccttgcagcagtcataagaagcagaacccatcctt
atctcttttggatgtggagactgtgacagaaagaatggccagtcatttgc
caagatcattcttcagtaactcatagtttgagaacttaagcaccctgtct
ctaatagaggatgctctcatcttaccttagtcttcctgttttgacagtcc
ttcatagctgcattagagtgctttataaaatcataagctattttggatat
aattgttgtgtctagctttccatcaaatggcaagtactttgagtcaatct
acagaagccaaatggaatgaagccactacttaatgttatctgacagccct
tttctgagatgatacagaactgtagtatattgtaaagtcagccatgtagg
aaaagaactgagcataaattttaagtcagacatcgctataaaaaccatct
aggaaaataccatttctgtcgtactcagcaaagcaagcatactctaccct
gtattgttacacatcaaggattttaaaaactggttttcaatgtttaacca
aaaatgattgtctctgttccaagaaaatttgatgcaagaaaatagtgtga
tgttattcaaaattttggtgagattacatcactgtgaggcagcatgaaca
ctctttgaacttgaagtcagacatctgggtgcaggatttagcatcatatc
ttcaggactctccagcctttggagaactagtcactcaactgtcatagtca
taagcacacctgtaatcgcactctctgaagatcataatctactgagcaca
gaggggattgtaaaatgattaacatgacatgataggatattcaaactact
taggacctctaggtagattcagctaatttatttcctagcatctggatctc
tggttagggatgaaggactgccgtaggctcagggaaactgtttactg
gaattcacaaatgtgaggaaagtttcatttgagaaattgttgcagctata
tgaccaaaccctgtcatcagaagtgtctgatggactcatgggctcatgag
acatttcaattttggctataagctggtttctaaaggtaataataataatt
aataataacagcataataataaatgttttacttctaatagattattttaa
atatttagtataataaatgaaggtatcatattgtcacatgttgatacatt
cacaattttcagaacaggggccctctccttttcaatatcaggagctaaaa
attaatttggccaattcttttgaccttttccctctccctagctaaagcac
aagttttattcagatctcagaaggcaactaatgttattgaaaaaaatcat
agtttttatgtatctagttataatataaattataatagtaataataatta
taattattattttacttaaggtattcttgagctattctcaggaaacacct
ggcaatcaacagttggagagcaaggtggtctgcgggctgtggtattcatg
cttatttattgtctgatatcatctctgagttggtttctggcattattcaa
ttatttgtttataatggttaataaatgtaggcattgtctagcctgctgtc
agccagaggccctcccagcctttccattttctagggtgtggttttcattt
gggcctgtcccacgtggcaatgagggcagttggtggttcctgggtgctgt
ctatttcacaaagtggtctgctgtctgcaggagtctgagcgtacttttcc
ccatgaggacctaggctgctgagctgagagcctttgcacagttactatcg
cctcataatgggctgatgtttctctccatcagacaaacacaaatagtgct
tgtggtgagagaggacagcagtggtaacttctgcagaggaaaccagctgc
attgtggatgccaaatacattcttgtgaagaaataaacatagcatgaaag
agggagctgacttactgtgtaaaccgaagatgaatcccagtaaatcttga
atgtattcatgttcttctgtatatttcattcccaaaaactgtgacatcag
ttctcacaaattcatgacatttcttgactatctaatagatagagatatcg
ctaacaaattgaggatagaacccttcccatagaaaactaggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_46662997_46664197
seq2: B6Ng01-162N09.b_46_1242 (reverse)

seq1  CAGTAAACAGTTTCCCTGAGGCTTACGGCAGTCC-TCATCACATACAGGA  49
      ||||||||||||||||||| || ||||||||||| ||||| |  ||  ||
seq2  CAGTAAACAGTTTCCCTGA-GCCTACGGCAGTCCTTCATCCCTAACCAGA  49

seq1  GATTCAGAATGCTAGGGAATTAAATTAGCTGAATCTACCTAGAGTTCCTA  99
      ||| ||| |||||| |||| |||||||||||||||||||||||| |||| 
seq2  GATCCAG-ATGCTA-GGAAATAAATTAGCTGAATCTACCTAGAGGTCCT-  96

seq1  AAGTAGTTTG-ATAT-CTATCATGTCATGTTAATCATTTTAACAATTCCC  147
      |||||||||| |||| |||||||||||||||||||||||| |||| ||||
seq2  AAGTAGTTTGAATATCCTATCATGTCATGTTAATCATTTT-ACAA-TCCC  144

seq1  CTCTGTGCTCAGTAGATTATGATTCTTCAGAGAGTGCGATTACAGGTGTG  197
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CTCTGTGCTCAGTAGATTATGA-TCTTCAGAGAGTGCGATTACAGGTGTG  193

seq1  CTTATGACTATGACAGTTGAGTGACTAGTTCTCCAAAGGCTGGAGAGTCC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGACTATGACAGTTGAGTGACTAGTTCTCCAAAGGCTGGAGAGTCC  243

seq1  TGAAGATATGATGCTAAATCCTGCACCCAGATGTCTGACTTCAAGTTCAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGATATGATGCTAAATCCTGCACCCAGATGTCTGACTTCAAGTTCAA  293

seq1  AGAGTGTTCATGCTGCCTCACAGTGATGTAATCTCACCAAAATTTTGAAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGTTCATGCTGCCTCACAGTGATGTAATCTCACCAAAATTTTGAAT  343

seq1  AACATCACACTATTTTCTTGCATCAAATTTTCTTGGAACAGAGACAATCA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCACACTATTTTCTTGCATCAAATTTTCTTGGAACAGAGACAATCA  393

seq1  TTTTTGGTTAAACATTGAAAACCAGTTTTTAAAATCCTTGATGTGTAACA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGGTTAAACATTGAAAACCAGTTTTTAAAATCCTTGATGTGTAACA  443

seq1  ATACAGGGTAGAGTATGCTTGCTTTGCTGAGTACGACAGAAATGGTATTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGGGTAGAGTATGCTTGCTTTGCTGAGTACGACAGAAATGGTATTT  493

seq1  TCCTAGATGGTTTTTATAGCGATGTCTGACTTAAAATTTATGCTCAGTTC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGATGGTTTTTATAGCGATGTCTGACTTAAAATTTATGCTCAGTTC  543

seq1  TTTTCCTACATGGCTGACTTTACAATATACTACAGTTCTGTATCATCTCA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTACATGGCTGACTTTACAATATACTACAGTTCTGTATCATCTCA  593

seq1  GAAAAGGGCTGTCAGATAACATTAAGTAGTGGCTTCATTCCATTTGGCTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGGGCTGTCAGATAACATTAAGTAGTGGCTTCATTCCATTTGGCTT  643

seq1  CTGTAGATTGACTCAAAGTACTTGCCATTTGATGGAAAGCTAGACACAAC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGATTGACTCAAAGTACTTGCCATTTGATGGAAAGCTAGACACAAC  693

seq1  AATTATATCCAAAATAGCTTATGATTTTATAAAGCACTCTAATGCAGCTA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATATCCAAAATAGCTTATGATTTTATAAAGCACTCTAATGCAGCTA  743

seq1  TGAAGGACTGTCAAAACAGGAAGACTAAGGTAAGATGAGAGCATCCTCTA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGACTGTCAAAACAGGAAGACTAAGGTAAGATGAGAGCATCCTCTA  793

seq1  TTAGAGACAGGGTGCTTAAGTTCTCAAACTATGAGTTACTGAAGAATGAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGACAGGGTGCTTAAGTTCTCAAACTATGAGTTACTGAAGAATGAT  843

seq1  CTTGGCAAATGACTGGCCATTCTTTCTGTCACAGTCTCCACATCCAAAAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCAAATGACTGGCCATTCTTTCTGTCACAGTCTCCACATCCAAAAG  893

seq1  AGATAAGGATGGGTTCTGCTTCTTATGACTGCTGCAAGGATAAAATGTTA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAGGATGGGTTCTGCTTCTTATGACTGCTGCAAGGATAAAATGTTA  943

seq1  TATAATTAAAAAGCACTGATGCCAATAGTTGACTGGAAGTAGGGATTGAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTAAAAAGCACTGATGCCAATAGTTGACTGGAAGTAGGGATTGAA  993

seq1  TGGATGATAGCAAGGATCCTTATTAGTTTTATGTTTTTGAGTAAGGCAGA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGATAGCAAGGATCCTTATTAGTTTTATGTTTTTGAGTAAGGCAGA  1043

seq1  AATTTCTGAATGTTCTCTAAAATGTACTTAAGGTGAAAAATAAAACAGAC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTGAATGTTCTCTAAAATGTACTTAAGGTGAAAAATAAAACAGAC  1093

seq1  GATTATGCTTTATTTTTGCTGTGTAAATTGATTAAGTAACTGAACATAAA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATGCTTTATTTTTGCTGTGTAAATTGATTAAGTAACTGAACATAAA  1143

seq1  TTGAGTTATTTTCATATATAGTAAAAATACCAATTCTTCCATTCATAGGA  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTTATTTTCATATATAGTAAAAATACCAATTCTTCCATTCATAGGA  1193

seq1  ATTC  1201
      ||||
seq2  ATTC  1197

seq1: chr5_46556304_46557528
seq2: B6Ng01-162N09.g_67_1258

seq1  GAATTCACAAATGTGAGGAAAGTTTCATTTGAGAAATTGTTGCAGCTATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAAATGTGAGGAAAGTTTCATTTGAGAAATTGTTGCAGCTATA  50

seq1  TGACCAAACCCTGTCATCAGAAGTGTCTGATGGACTCATGGGCTCATGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCAAACCCTGTCATCAGAAGTGTCTGATGGACTCATGGGCTCATGAG  100

seq1  ACATTTCAATTTTGGCTATAAGCTGGTTTCTAAAGGTAATAATAATAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTCAATTTTGGCTATAAGCTGGTTTCTAAAGGTAATAATAATAATT  150

seq1  AATAATAACAGCATAATAATAAATGTTTTACTTCTAATAGATTATTTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATAACAGCATAATAATAAATGTTTTACTTCTAATAGATTATTTTAA  200

seq1  ATATTTAGTATAATAAATGAAGGTATCATATTGTCACATGTTGATACATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTAGTATAATAAATGAAGGTATCATATTGTCACATGTTGATACATT  250

seq1  CACAATTTTCAGAACAGGGGCCCTCTCCTTTTCAATATCAGGAGCTAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATTTTCAGAACAGGGGCCCTCTCCTTTTCAATATCAGGAGCTAAAA  300

seq1  ATTAATTTGGCCAATTCTTTTGACCTTTTCCCTCTCCCTAGCTAAAGCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATTTGGCCAATTCTTTTGACCTTTTCCCTCTCCCTAGCTAAAGCAC  350

seq1  AAGTTTTATTCAGATCTCAGAAGGCAACTAATGTTATTGAAAAAAATCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTATTCAGATCTCAGAAGGCAACTAATGTTATTGAAAAAAATCAT  400

seq1  AGTTTTTATGTATCTAGTTATAATATAAATTATAATAGTAATAATAATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTTATGTATCTAGTTATAATATAAATTATAATAGTAATAATAATTA  450

seq1  TAATTATTATTTTACTTAAGGTATTCTTGAGCTATTCTCAGGAAACACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTATTATTTTACTTAAGGTATTCTTGAGCTATTCTCAGGAAACACCT  500

seq1  GGCAATCAACAGTTGGAGAGCAAGGTGGTCTGCGGGCTGTGGTATTCATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATCAACAGTTGGAGAGCAAGGTGGTCTGCGGGCTGTGGTATTCATG  550

seq1  CTTATTTATTGTCTGATATCATCTCTGAGTTGGTTTCTGGCATTATTCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTATTGTCTGATATCATCTCTGAGTTGGTTTCTGGCATTATTCAA  600

seq1  TTATTTGTTTATAATGGTTAATAAATGTAGGCATTGTCTAGCCTGCTGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGTTTATAATGGTTAATAAATGTAGGCATTGTCTAGCCTGCTGTC  650

seq1  AGCCAGAGGCCCTCCCAGCCTTTCCATTTTCTAGGGTGTGGTTTTCATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGAGGCCCTCCCAGCCTTTCCATTTTCTAGGGTGTGGTTTTCATTT  700

seq1  GGGCCTGTCCCACGTGGCAATGAGGGCAGTTGGTGGTTCCTGGGTGCTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTGTCCCACGTGGCAATGAGGGCAGTTGGTGGTTCCTGGGTGCTGT  750

seq1  CTATTTCACAAAGTGGTCTGCTGTCTGCAGGAGTCTGAGCGTACTTTTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTCACAAAGTGGTCTGCTGTCTGCAGGAGTCTGAGCGTACTTTTCC  800

seq1  CCATGAGGACCTAGGCTGCTGAGCTGAGAGCCTTTGCACAGTTACTATCG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGAGGACCTAGGCTGCTGAGCTGAGAGCCTTTGCACAGTTACTATCG  850

seq1  CCTCATAATGGGCTGATGTTTCTCTCCATCAGACAAACACAAATAGTGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATAATGGGCTGATGTTTCTCTCCATCAGACAAACACAAATAGTGCT  900

seq1  TGTGGTGAGAGAGGACAGCAGGTGGTAACTTCTGCAAGAGGAAACCAGCT  950
      |||||||||||||||||||| |||||||||||||| ||||||||||||||
seq2  TGTGGTGAGAGAGGACAGCA-GTGGTAACTTCTGC-AGAGGAAACCAGCT  948

seq1  GCAATTGTGGATGCCAAATACAATCTTGTTGAAGAAATAAACCATAGCAA  1000
      || ||||||||||||||||||| ||||| |||||||||||| |||||| |
seq2  GC-ATTGTGGATGCCAAATACATTCTTG-TGAAGAAATAAA-CATAGC-A  994

seq1  TGAAAAGAGGGAGGCTGACTTACTGTTGTAAACCGAAGATGAAATTCCCA  1050
      || ||||||||| |||||||||||| |||||||||||||||||  |||||
seq2  TG-AAAGAGGGA-GCTGACTTACTG-TGTAAACCGAAGATGAA--TCCCA  1039

seq1  AGTTAAATC-TGAATGTATTCATGTTCTTCTGTATATTTCATTCCACAAA  1099
         |||||| ||||||||||||||||||||||||||||||||||| ||||
seq2  --GTAAATCTTGAATGTATTCATGTTCTTCTGTATATTTCATTCC-CAAA  1086

seq1  AACCTGTGAACATCAGTTCTTTACAACAAAATTCATTGACAATTTCTGTG  1149
      || ||||| |||||||||||   ||   ||||||| |||| |||||| ||
seq2  AA-CTGTG-ACATCAGTTCT---CA--CAAATTCA-TGAC-ATTTCT-TG  1126

seq1  ACTACTTTCACTAGTATAGAGATAT-GCTTAAACAGAGTTGAATGTGATA  1198
      ||||  |  | ||| |||||||||| |||  |||| | ||||    ||||
seq2  ACTA--TCTAATAG-ATAGAGATATCGCT--AACA-AATTGA---GGATA  1167

seq1  GAAACCCTGCCATTAAGAAAACTAGGT  1225
      ||| || | ||||  ||||||||||||
seq2  GAACCCTTCCCAT--AGAAAACTAGGT  1192