BAC Information

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BAC

Clone NameB6Ng01-162O10
Chromosome5 (Build37)9 (Build37)
Map Location 109,645,380 - 109,646,55520,584,932 - 20,585,411
singlet/doubletsingletsinglet
Overlap geneEG231591
Upstream geneCcdc18, Dr1, Pigg, Pde6b, Atp5k, Mfsd7, Pcgf3, LOC100042557, Cplx1, LOC100042571, Gak, Tmem175, Dgkq, Idua, Slc26a1, LOC100042616, Fgfrl1, LOC671564, 1810008K16Rik, EG627479, EG435864, EG667087, LOC100041615, V2r16, LOC545792, EG384219, Vmn2r12, LOC231589
Downstream geneLOC667128, EG211223, EG384220, EG636052, EG384221, LOC667159, LOC667171, Tpte2, EG667185, LOC671695, LOC636173, LOC624831, LOC100041734, LOC100042749, LOC667198, 4930522L14Rik, LOC667243, Plcxd1, Gtpbp6, LOC675812, Chfr, Golga3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162O10.bB6Ng01-162O10.g
ACCDH955622DH955623
length1,1701,082
definitionDH955622|Mus musculus domesticus DNA, BAC clone: B6Ng01-162O10, 5' end.DH955623|Mus musculus domesticus DNA, BAC clone: B6Ng01-162O10, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(109,645,380 - 109,646,555)(20,584,932 - 20,585,411)
sequence
gaattcaaatgccttctctttccaaactagaaatatgatatggcctagat
ggaaactgaagacctaaaattccatgtttcaaaaacttgatctgttaagt
aatatctacttcttttagactaagcaaataacttgcaatattttctacaa
actatgcaaatctttcattatatgatggctactaattttataatatatag
aaaatatcaagggggacatacctgtataactattatttgaacagtaatat
taggcataatctatacatgtgttttttttctttgattctttgtacaaaga
aacttaactacatgattagtccacaatccttcactccatcatccagctta
gtccctgtcaaagaccagatgctcagcgtaacagttgttatttaatgaaa
tacatttcaagagcttagatggcttaaaagattaagcatttcctgtaaaa
gaattagaacaagagtgaagatttcaagaatgcaacaagacacgggaagt
tgcttatcatcaatcacagcctacctaaggaaagacagatgaatgtgaat
atccatatcctttaggtcatagagtttggaatgtgtgcttgggaagacag
acatcttcccacaatgagaggggcatgcatatgtctatgaggcatacagc
ttcaagaattaaaatattcctttatgtaaatatttgcatgagaaattgta
tgttctagtacctatatgtagacacggacaaggacacaactctcaaaaaa
aaaaacaaagtacataacatatttcatcaactggcatcagtaactatgtc
tgcacgctactcttgtctgtgagtagtaaatttatggtttgaggaattaa
ataatctgagattatacatataaatattcatcatatttttcattattttt
gtttaataaataatttttgctgttcaattcccgatgaagtgttttgttcc
accacgaagcataggttaatagagagaaatcttgagttagtggaccccac
aataatatggaatgagtgatactcaataccaattatttattgatatatcc
tctgaataatacaaagatgcattataacagcaaatgatgatatttataag
aatctaatggtgttttcagcagaatttggaacagtgtgtgagggtcagat
gaataagatatgcccaactt
gaattctgattggatgatgtggggtggagctagaaggaggtgagatggcg
tgaatatagttttggcctttgtcatgagtagaagtagtagtaagagaagc
tgttgtaacagtagtcgttaagcccttgatgcaagaggtagtagaagaag
ctgctggggaagagagctgtaaaggaaaaagcccaaagtaaaagaagttg
ctgcgtgaacttgccttggtgtccaagttgttcttgtcgccaccagaccg
gagaccaggacacaggccgagaacgaaattagggagacaacacctttcac
agtggtcacaaataaaataaaataccttggtgtgaccataactaaggaag
taaaagatctgtatgataagaacttcaagtctctgaagaaagaaattgaa
gaaaatgtcagtagatggtaagatctcccatgctcatggatgggcaggat
caatatagtaaaaatggctatcttgccaaaaacaatctacagattcagtg
caatctccatcagaattcaaactcaattcttcacaaatttagcaagaaaa
atttgcaaattcatctggaataacaaaaaacccaagataacaaaaactat
tctcaacaataaaagaacctctggtggaatccccatgcctgacctcaatc
agagcaattatgattaaaaagtgcatggtactggtacaatgacagacagg
tagatcaatggaacagaactgaagaccttgaaatgaacccacacacctat
cgtcacttgatctttgacaaagcagctaaaaccatccagtggaaaaaaga
tagcattttcaacaaatgatgctggctcaactgggtagttatcatgtata
agaatgggaattgatccattcttatctccttgtaaaagctcaggtctaaa
atcagtgtggtggcacacgcctttaattccagcactccggaggcagaggg
aggcatatttctgagttcaggcagcctagtctacaaagtgagttccagga
cagccagagctattacacagaactctgtcttgaaaaccaataaaagaaaa
aaacccaaaaaccaaaacaacacacaacaaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_109645380_109646555
seq2: B6Ng01-162O10.b_45_1214 (reverse)

seq1  AAGTT-GGCATA-CTTA-TCATCTGGACACCTCACACACTGTTCCATA-T  46
      ||||| |||||| |||| |||||| ||| ||||||||||||||||| | |
seq2  AAGTTGGGCATATCTTATTCATCT-GAC-CCTCACACACTGTTCCAAATT  48

seq1  CTGCTGGAAAACAACAATAGATCCTTATAAAATATCATCATTTGCTGTTA  96
      ||||| ||||||| || ||||| ||||| |||||||||||||||||||| 
seq2  CTGCT-GAAAACACCATTAGATTCTTAT-AAATATCATCATTTGCTGTT-  95

seq1  ATAATTGCATCTTTGTATTATTCAGAGGATATATCAATAAATAATTTGGT  146
      |||| ||||||||||||||||||||||||||||||||||||||| |||||
seq2  ATAA-TGCATCTTTGTATTATTCAGAGGATATATCAATAAATAA-TTGGT  143

seq1  ATTGAGTATCAACTCCATTCCATATTATTGTGGGGTCCACTAACTCAAGA  196
      |||||||||| ||| |||||||||||||||||||||||||||||||||||
seq2  ATTGAGTATC-ACT-CATTCCATATTATTGTGGGGTCCACTAACTCAAGA  191

seq1  TTTCTCTCTATTAACCTATGCTTCGTGGTGGAACAAAACACCTTCATCGG  246
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TTTCTCTCTATTAACCTATGCTTCGTGGTGGAACAAAACA-CTTCATCGG  240

seq1  GAATTGAACAGCAAAAATTATTTATTAAACAAAAATAATGAAAAATATGA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGAACAGCAAAAATTATTTATTAAACAAAAATAATGAAAAATATGA  290

seq1  TGAATATTTATATGTATAATCTCAGATTATTTAATTCCTCAAACCATAAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATATTTATATGTATAATCTCAGATTATTTAATTCCTCAAACCATAAA  340

seq1  TTTACTACTCACAGACAAGAGTAGCGTGCAGACATAGTTACTGATGCCAG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTACTCACAGACAAGAGTAGCGTGCAGACATAGTTACTGATGCCAG  390

seq1  TTGATGAAATATGTTATGTACTTTGTTTTTTTTTTTGAGAGTTGTGTCCT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGAAATATGTTATGTACTTTGTTTTTTTTTTTGAGAGTTGTGTCCT  440

seq1  TGTCCGTGTCTACATATAGGTACTAGAACATACAATTTCTCATGCAAATA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCGTGTCTACATATAGGTACTAGAACATACAATTTCTCATGCAAATA  490

seq1  TTTACATAAAGGAATATTTTAATTCTTGAAGCTGTATGCCTCATAGACAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATAAAGGAATATTTTAATTCTTGAAGCTGTATGCCTCATAGACAT  540

seq1  ATGCATGCCCCTCTCATTGTGGGAAGATGTCTGTCTTCCCAAGCACACAT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATGCCCCTCTCATTGTGGGAAGATGTCTGTCTTCCCAAGCACACAT  590

seq1  TCCAAACTCTATGACCTAAAGGATATGGATATTCACATTCATCTGTCTTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAACTCTATGACCTAAAGGATATGGATATTCACATTCATCTGTCTTT  640

seq1  CCTTAGGTAGGCTGTGATTGATGATAAGCAACTTCCCGTGTCTTGTTGCA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGGTAGGCTGTGATTGATGATAAGCAACTTCCCGTGTCTTGTTGCA  690

seq1  TTCTTGAAATCTTCACTCTTGTTCTAATTCTTTTACAGGAAATGCTTAAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGAAATCTTCACTCTTGTTCTAATTCTTTTACAGGAAATGCTTAAT  740

seq1  CTTTTAAGCCATCTAAGCTCTTGAAATGTATTTCATTAAATAACAACTGT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAAGCCATCTAAGCTCTTGAAATGTATTTCATTAAATAACAACTGT  790

seq1  TACGCTGAGCATCTGGTCTTTGACAGGGACTAAGCTGGATGATGGAGTGA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGCTGAGCATCTGGTCTTTGACAGGGACTAAGCTGGATGATGGAGTGA  840

seq1  AGGATTGTGGACTAATCATGTAGTTAAGTTTCTTTGTACAAAGAATCAAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTGTGGACTAATCATGTAGTTAAGTTTCTTTGTACAAAGAATCAAA  890

seq1  GAAAAAAAACACATGTATAGATTATGCCTAATATTACTGTTCAAATAATA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAAACACATGTATAGATTATGCCTAATATTACTGTTCAAATAATA  940

seq1  GTTATACAGGTATGTCCCCCTTGATATTTTCTATATATTATAAAATTAGT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATACAGGTATGTCCCCCTTGATATTTTCTATATATTATAAAATTAGT  990

seq1  AGCCATCATATAATGAAAGATTTGCATAGTTTGTAGAAAATATTGCAAGT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATCATATAATGAAAGATTTGCATAGTTTGTAGAAAATATTGCAAGT  1040

seq1  TATTTGCTTAGTCTAAAAGAAGTAGATATTACTTAACAGATCAAGTTTTT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGCTTAGTCTAAAAGAAGTAGATATTACTTAACAGATCAAGTTTTT  1090

seq1  GAAACATGGAATTTTAGGTCTTCAGTTTCCATCTAGGCCATATCATATTT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACATGGAATTTTAGGTCTTCAGTTTCCATCTAGGCCATATCATATTT  1140

seq1  CTAGTTTGGAAAGAGAAGGCATTTGAATTC  1176
      ||||||||||||||||||||||||||||||
seq2  CTAGTTTGGAAAGAGAAGGCATTTGAATTC  1170

seq1: chr9_20584932_20585411
seq2: B6Ng01-162O10.g_975_1151

seq1  TGTGGTGGCGCACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGAG  50
      ||||||||| |||||||||||| ||||||||| ||||||||||| |||  
seq2  TGTGGTGGCACACGCCTTTAATTCCAGCACTCCGGAGGCAGAGGGAGGCA  50

seq1  GATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAG  100
       |||||||||||| ||| |||||| |||||||||||||||||||||||||
seq2  TATTTCTGAGTTC-AGG-CAGCCTAGTCTACAAAGTGAGTTCCAGGACAG  98

seq1  CCAGGGCTA-CACAGAGAAACCCTGTCTCGAAAAAAGAAAAAAGAAAGAA  149
      |||| ||||  ||| || ||| |||||| |||||   | |||||||| ||
seq2  CCAGAGCTATTACACAG-AACTCTGTCTTGAAAACCAATAAAAGAAAAAA  147

seq1  A---AGAAAGGAAGGAAGGAAGGAAGGA-AGGAAGGAAGGAAGGAAGGAA  195
      |   | |||  ||   |  |   ||  | |                    
seq2  ACCCAAAAACCAAAACAACACACAACAACA--------------------  177

seq1  GGAAGGAAGGAAGGAAGGCAGGCAGGCAGGCAGGCAGGCAGGCAGGCAGG  245
                                                        
seq2  --------------------------------------------------  177

seq1  CAGGCAGGCAGGCAGGCAGGCAAGCTACCACATAACGAAGTCAGAAGAAG  295
                                                        
seq2  --------------------------------------------------  177

seq1  CTAATAAGTTGGTGTTGCACAAGGGGGCACAAGGTTTCTCAGGGGCATCA  345
                                                        
seq2  --------------------------------------------------  177

seq1  GAGACCAGCACACAGCAGCTTCTTAAGATGGGAAGAGTTGGGTGGTCAGG  395
                                                        
seq2  --------------------------------------------------  177

seq1  GTCTGAAGCCACAACTCCCCATGTTCCACATATCAGGGCCTCAGGGAAAG  445
                                                        
seq2  --------------------------------------------------  177

seq1  CCTTGGAGAAGCTTACTCAACAACACACAACAACA  480
                                         
seq2  -----------------------------------  177