BAC Information

Click to search

BAC

Clone NameB6Ng01-162O11
Chromosome5 (Build37)
Map Location 96,417,007 - 96,515,026
singlet/doubletdoublet
Overlap geneCnot6l
Upstream geneLOC622894, EG666121, LOC666125, EG666133, LOC100041296, LOC100041253, LOC100041264, EG624049, EG666159, LOC666164, EG666169, D5Ertd577e, LOC100041354, LOC100040503, LOC666187, EG622731, LOC100041380, EG666203, EG666209, LOC665943, LOC433921, Cxcl13, EG666231
Downstream geneLOC100040559, Mrpl1, Fras1, Anxa3, EG666266, LOC670358, Bmp2k, Paqr3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162O11.bB6Ng01-162O11.g
ACCDH955624DH955625
length1,1901,009
definitionDH955624|Mus musculus domesticus DNA, BAC clone: B6Ng01-162O11, 5' end.DH955625|Mus musculus domesticus DNA, BAC clone: B6Ng01-162O11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,417,007 - 96,418,207)(96,514,010 - 96,515,026)
sequence
gaattccttaatgtcacagatgaagaaagagtgatccacattgatcaata
gtctggcccaagtctcatgcttccttctgcaatattcaatatgtcacctg
ttcctaatattcatataacacacactgcagaagatacacaagtccagtcc
tggagcttttcacaaaatctaattttctatgaaaactggacaaatagtca
aaattagatacaaatgaaataatgtcctaatttagcaatcttgtctttat
ggagcttagtctacttcagtctttgactcaacccttcacactattctgat
aggtttagagactgaggatatcaggattttagctctgagacacaaaatgg
caagctgcctaatttctccatcctttcggtctaatttctcctacttaaga
agttataagagtctgtaatttcactcaggcttgaacagccaaacttttga
cagtgtaacatggtgctctggtctacaaattcaccgataccctaggactg
ggcatgtcccataggccccaggttggcgtgactagagaaactctctctaa
tatgctcatcacagactaaatggagctgaggaaccaagactttctagtgt
cttcttcattcttttgtctattaacactttgccttacaaaaatgtcacca
agagagaaggtccacaaagcatagtagaaaaattgtgaaaactgggctag
agagatggctcagtggttaagagcactgactgctcttccaaacgtcctga
gttcaattcccagcaaccacatggtggccacaaccaactgtaatggcgat
ctgatgccctcctctgatgtgtctgaagacagctaccatgtacttatata
aataaaataaaaaatctttcttagaaattgtgaaaatattaagtcattta
gatatttcaaatgccacaagaaatatactcattgctaagaggcaagaaac
cataaaaagatttatatcatatttttcacgtgaaaattcagtcctagaag
tatatgcccatacgatatacttgttatactcactagaaccacataggttt
gacattgtttcttcttaccctagtcagtactttcagtaataataaccagt
gtcctgttaaaataaaaagaaaaaatttctgttgtgtaactgaagaatga
agcagagggacttgccaagatgctgtaaaattgctcaggt
gaattcttgatttattctatagtttttgtcagcatttttacttaacaggt
aatttctgcccctttaacacaccattcattgagaaaattctttgaaatag
ggtatggcttggttaggctgaattagaagttatacttagccctctcttgt
agtttgagcttcacacgtgtgtaccctttattttttaaggttaaatagtt
ggcatgctttctttaatttctttgttacatctcaagtctttgtcagggtg
agaacaatatcttttatctatgtgatacttttcagagtttttagattatt
tatagcttcccagagagtctgaaattcattgtatacttggcattatcaag
gtctttcattgacctctcttctgcctgccttggaacactattatgtttta
atgtctcaagcagaacaagctgataagaccacatgggtgcacttctcttc
ctgtgctactttgtctggagtactagtttaaattattcagatgacacata
gtatcagatttcctttttcttacagttctttagtttatcattaaacagtc
catctttaatgtgagattttgtgtttacttctgttttagccttttcaatt
ttttttttttttttttttttttggtcttttcccattacattgttctggtg
ggttttgttctgtttattacaatgatctttttttggagtttcaccccttt
ttaatttgcagaagagtaattctaaattatgtaatacatacttctacttc
ctaaaacctgttcctttccttataaaaggaaaatttaatgggtaagagca
atggatttttgggacacatttttaatatttaacatagtggacatgcattt
tatagacagaagtgacagttaaacttctaggaaatggagacagcatacaa
aaagttgtaaagtattccttcagtttcacatagcacattacttggtaatt
tattttctcacattggaaaagttacaggttggtagataagaggacctaat
tttacctaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_96417007_96418207
seq2: B6Ng01-162O11.b_50_1239

seq1  GAATTCCTTAATGTCACAGATGAAGAAAGAGTGATCCACATTGATCAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTAATGTCACAGATGAAGAAAGAGTGATCCACATTGATCAATA  50

seq1  GTCTGGCCCAAGTCTCATGCTTCCTTCTGCAATATTCAATATGTCACCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGCCCAAGTCTCATGCTTCCTTCTGCAATATTCAATATGTCACCTG  100

seq1  TTCCTAATATTCATATAACACACACTGCAGAAGATACACAAGTCCAGTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAATATTCATATAACACACACTGCAGAAGATACACAAGTCCAGTCC  150

seq1  TGGAGCTTTTCACAAAATCTAATTTTCTATGAAAACTGGACAAATAGTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCTTTTCACAAAATCTAATTTTCTATGAAAACTGGACAAATAGTCA  200

seq1  AAATTAGATACAAATGAAATAATGTCCTAATTTAGCAATCTTGTCTTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAGATACAAATGAAATAATGTCCTAATTTAGCAATCTTGTCTTTAT  250

seq1  GGAGCTTAGTCTACTTCAGTCTTTGACTCAACCCTTCACACTATTCTGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTTAGTCTACTTCAGTCTTTGACTCAACCCTTCACACTATTCTGAT  300

seq1  AGGTTTAGAGACTGAGGATATCAGGATTTTAGCTCTGAGACACAAAATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTAGAGACTGAGGATATCAGGATTTTAGCTCTGAGACACAAAATGG  350

seq1  CAAGCTGCCTAATTTCTCCATCCTTTCGGTCTAATTTCTCCTACTTAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTGCCTAATTTCTCCATCCTTTCGGTCTAATTTCTCCTACTTAAGA  400

seq1  AGTTATAAGAGTCTGTAATTTCACTCAGGCTTGAACAGCCAAACTTTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATAAGAGTCTGTAATTTCACTCAGGCTTGAACAGCCAAACTTTTGA  450

seq1  CAGTGTAACATGGTGCTCTGGTCTACAAATTCACCGATACCCTAGGACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTAACATGGTGCTCTGGTCTACAAATTCACCGATACCCTAGGACTG  500

seq1  GGCATGTCCCATAGGCCCCAGGTTGGCGTGACTAGAGAAACTCTCTCTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGTCCCATAGGCCCCAGGTTGGCGTGACTAGAGAAACTCTCTCTAA  550

seq1  TATGCTCATCACAGACTAAATGGAGCTGAGGAACCAAGACTTTCTAGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTCATCACAGACTAAATGGAGCTGAGGAACCAAGACTTTCTAGTGT  600

seq1  CTTCTTCATTCTTTTGTCTATTAACACTTTGCCTTACAAAAATGTCACCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCATTCTTTTGTCTATTAACACTTTGCCTTACAAAAATGTCACCA  650

seq1  AGAGAGAAGGTCCACAAAGCATAGTAGAAAAATTGTGAAAACTGGGCTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAAGGTCCACAAAGCATAGTAGAAAAATTGTGAAAACTGGGCTAG  700

seq1  AGAGATGGCTCAGTGGTTAAGAGCACTGACTGCTCTTCCAAACGTCCTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGGCTCAGTGGTTAAGAGCACTGACTGCTCTTCCAAACGTCCTGA  750

seq1  GTTCAATTCCCAGCAACCACATGGTGGCCACAACCAACTGTAATGGCGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAATTCCCAGCAACCACATGGTGGCCACAACCAACTGTAATGGCGAT  800

seq1  CTGATGCCCTCCTCTGATGTGTCTGAAGACAGCTACCATGTACTTATATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGCCCTCCTCTGATGTGTCTGAAGACAGCTACCATGTACTTATATA  850

seq1  AATAAAATAAAAAAATCTTTCTTAGAAATTGTGAAAAATATTAAGTCATT  900
      |||||||| |||||||||||||||||||||||| ||||||||||||||||
seq2  AATAAAAT-AAAAAATCTTTCTTAGAAATTGTG-AAAATATTAAGTCATT  898

seq1  TAGATATTTCAAATGCCACAAGAAATATACTCATTGCTAAGAGGCAAGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATATTTCAAATGCCACAAGAAATATACTCATTGCTAAGAGGCAAGAA  948

seq1  ACCATAAAAAGATTTATATCATATTTTTCACGTGAAAATTCAGTCCTAGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATAAAAAGATTTATATCATATTTTTCACGTGAAAATTCAGTCCTAGA  998

seq1  AGTATATGCCCATACGATATACTTGTTATACTCACTAGAACCACATAGGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATATGCCCATACGATATACTTGTTATACTCACTAGAACCACATAGGT  1048

seq1  TTGACATTGTCTCTTCTTTACCCTAGTCAGTACTTTCAGTAATAATAACA  1100
      |||||||||| ||||| |||||||||||||||||||||||||||||||| 
seq2  TTGACATTGTTTCTTC-TTACCCTAGTCAGTACTTTCAGTAATAATAACC  1097

seq1  AGTGGTCCTTGTTAGATTATAAAAGAAAAAAATTTCTGTTGTGTAACTGA  1150
      ||| |||| ||||| |  ||||||  ||||||||||||||||||||||||
seq2  AGT-GTCC-TGTTAAA--ATAAAAAGAAAAAATTTCTGTTGTGTAACTGA  1143

seq1  AGAATGACAGCAAGAGGGACTTGGCAAGATGCTGTTAGATTGCTACCAGG  1200
      ||||||| ||| ||||||||||| ||||||||||| | ||||||  ||||
seq2  AGAATGA-AGC-AGAGGGACTTGCCAAGATGCTGTAAAATTGCT--CAGG  1189

seq1  T  1201
      |
seq2  T  1190

seq1: chr5_96514010_96515026
seq2: B6Ng01-162O11.g_67_1075 (reverse)

seq1  TTAGGTAAAATTATGTTTCCTTCTTATCTTACCAAACTGTAACTTTTTTC  50
      ||||||||||||| ||   | ||||||| |||||| |||||||  |||||
seq2  TTAGGTAAAATTAGGT---CCTCTTATC-TACCAACCTGTAAC--TTTTC  44

seq1  CAATGTTGAGAAAATAAATTACCAAAGTAATGTGCTATGTGAAACTGAAG  100
      ||||| ||||||||||||||||| ||||||||||||||||||||||||||
seq2  CAATG-TGAGAAAATAAATTACC-AAGTAATGTGCTATGTGAAACTGAAG  92

seq1  GAATACTTTACAACTTTTTGTATGCTGTCTCCATTTCCTAGAAGTTTAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACTTTACAACTTTTTGTATGCTGTCTCCATTTCCTAGAAGTTTAAC  142

seq1  TGTCACTTCTGTCTAT-AAATGCATGTTCACTATGTTAAATATTAAAAAT  199
      |||||||||||||||| |||||||||| ||||||||||||||||||||||
seq2  TGTCACTTCTGTCTATAAAATGCATGTCCACTATGTTAAATATTAAAAAT  192

seq1  GTGTCCCAAAAATCCATTTGCTCTTACCCATTAAATTTTCCTTTTATAAG  249
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GTGTCCCAAAAATCCA-TTGCTCTTACCCATTAAATTTTCCTTTTATAAG  241

seq1  GAAAGGAACAGGTTTTAGGAAGTAGAAGTATGTATTACATAATTTAGAAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGAACAGGTTTTAGGAAGTAGAAGTATGTATTACATAATTTAGAAT  291

seq1  TACTCTTCTGCAAATTAAAAAGGGGTGAAACTCCAAAAAAAGATCATTGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTTCTGCAAATTAAAAAGGGGTGAAACTCCAAAAAAAGATCATTGT  341

seq1  AATAAACAGAACAAAACCCACCAGAACAATGTAATGGGAAAAGACCAAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACAGAACAAAACCCACCAGAACAATGTAATGGGAAAAGACCAAAA  391

seq1  AAAAAAAAAAAAAAAAAAAATTGAAAAGGCTAAAACAGAAGTAAACACAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAAAAATTGAAAAGGCTAAAACAGAAGTAAACACAA  441

seq1  AATCTCACATTAAAGATGGACTGTTTAATGATAAACTAAAGAACTGTAAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCACATTAAAGATGGACTGTTTAATGATAAACTAAAGAACTGTAAG  491

seq1  AAAAAGGAAATCTGATACTATGTGTCATCTGAATAATTTAAACTAGTACT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGGAAATCTGATACTATGTGTCATCTGAATAATTTAAACTAGTACT  541

seq1  CCAGACAAAGTAGCACAGGAAGAGAAGTGCACCCATGTGGTCTTATCAGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACAAAGTAGCACAGGAAGAGAAGTGCACCCATGTGGTCTTATCAGC  591

seq1  TTGTTCTGCTTGAGACATTAAAACATAATAGTGTTCCAAGGCAGGCAGAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTGCTTGAGACATTAAAACATAATAGTGTTCCAAGGCAGGCAGAA  641

seq1  GAGAGGTCAATGAAAGACCTTGATAATGCCAAGTATACAATGAATTTCAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGTCAATGAAAGACCTTGATAATGCCAAGTATACAATGAATTTCAG  691

seq1  ACTCTCTGGGAAGCTATAAATAATCTAAAAACTCTGAAAAGTATCACATA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCTGGGAAGCTATAAATAATCTAAAAACTCTGAAAAGTATCACATA  741

seq1  GATAAAAGATATTGTTCTCACCCTGACAAAGACTTGAGATGTAACAAAGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAAGATATTGTTCTCACCCTGACAAAGACTTGAGATGTAACAAAGA  791

seq1  AATTAAAGAAAGCATGCCAACTATTTAACCTTAAAAAATAAAGGGTACAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAGAAAGCATGCCAACTATTTAACCTTAAAAAATAAAGGGTACAC  841

seq1  ACGTGTGAAGCTCAAACTACAAGAGAGGGCTAAGTATAACTTCTAATTCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGTGAAGCTCAAACTACAAGAGAGGGCTAAGTATAACTTCTAATTCA  891

seq1  GCCTAACCAAGCCATACCCTATTTCAAAGAATTTTCTCAATGAATGGTGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAACCAAGCCATACCCTATTTCAAAGAATTTTCTCAATGAATGGTGT  941

seq1  GTTAAAGGGGCAGAAATTACCTGTTAAGTAAAAATGCTGACAAAAACTAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAGGGGCAGAAATTACCTGTTAAGTAAAAATGCTGACAAAAACTAT  991

seq1  AGAATAAATCAAGAATTC  1017
      ||||||||||||||||||
seq2  AGAATAAATCAAGAATTC  1009