BAC Information

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BAC

Clone NameB6Ng01-163C04
Chromosome5 (Build37)
Map Location 117,328,949 - 117,329,802
singlet/doubletsinglet
Overlap genenone
Upstream geneCit, Prkab1, LOC545798, Ccdc60, 4930562A09Rik, Hspb8, 1500001A10Rik, LOC433943, Gm1684
Downstream geneLOC665073, Suds3, Taok3, Pebp1, LOC100042313, LOC100039359, BC023744, LOC667175, Wsb2, Rfc5, Ksr2, Nos1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163C04.bB6Ng01-163C04.g
ACCDH955797DH955798
length853673
definitionDH955797|Mus musculus domesticus DNA, BAC clone: B6Ng01-163C04, 5' end.DH955798|Mus musculus domesticus DNA, BAC clone: B6Ng01-163C04, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcccagaccccagaagtctccacttagcaatttgtcatatttggaa
taattggacccagatacccttctcggatatgtcccgagtgttctgatctg
gtgtattctcttctgtacattaagcaccaaacccagtatgtgaacactgg
ataaataccttctagccttgtattgtatggtccagcttttataacacacc
ttaagaaacacacaagaagtaggtggatcgccccctgcaacggaaccaag
cagagtgcacagtccatctgctctgtgttgccataacagaagaccacagg
ctgtgtacattataaagaacagagtcacagttatgaaggctgagaaatcc
aagcctgcatgttgtactgttccatggtgggagatgggagagagagacag
agacagagaatcagagagtggggggagagagaaaaacagagagagagaga
gagagagagagaaagagagagagagagagagagaatgcaccaaaaccaag
aatcttccagggccttcttaaccagagctgtgtcctcataggccccctac
tgatggggcattagcagcctggcttttctgtgtcaaggtagctccctgac
cttagtcagccatttggttttcatggtcagttctttcccctagttattaa
caaggcaatcagtagagttaacaccccacacaccatgagcatcctccatg
caggccctgtgacctccctccttcctccttgctctctgcttcatcttctg
gctcagataaaccaagctcaggagacttgtagtggtttgaataggattgg
ctcccataggcttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
tgt
gaattcctgcacaaaacatcatgatcaagaagcaagttggggaggaaagg
gtttattcagcttacacttccatactgctgttcatcaccaaggaagtcag
gacataaactcacacagggcaggaacatggaggcaggagctgatgcaaag
gccatggaggggtgctgcttactggcttgcttcccctggcttgctcagcc
tgctttcttacagaatccaggaccaccagcctagggatggcctcactcac
aatgggctgggccctcccacccttgatcactaattgagaaaatgccttac
agctgaatctcatggaggcatttcctcaatggagactcctttctctgtga
taactccaacttgtgtcaagttacacacaaaactagacagtacaggtata
caatatatattgtatactatacatacacacacatatatatattacataac
attatatatttaggtatatatattacatattacacattatacgctacatg
ttatatattatatatatttaggtatatgtactacacatatatatttaggt
ataaatattatatatcatatattatatatatttaggtatacatatatatg
cacaataacaatcgatgaagaaaaaagggcatgaatttgaaggagagtgg
agagagggtatatgggagggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_117328949_117329802
seq2: B6Ng01-163C04.b_45_897

seq1  GAATTCCCAGACCCCAGAAGTCTCCACTTAGCAATTTGTCATATTTGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAGACCCCAGAAGTCTCCACTTAGCAATTTGTCATATTTGGAA  50

seq1  TAATTGGACCCAGATACCCTTCTCGGATATGTCCCGAGTGTTCTGATCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGGACCCAGATACCCTTCTCGGATATGTCCCGAGTGTTCTGATCTG  100

seq1  GTGTATTCTCTTCTGTACATTAAGCACCAAACCCAGTATGTGAACACTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATTCTCTTCTGTACATTAAGCACCAAACCCAGTATGTGAACACTGG  150

seq1  ATAAATACCTTCTAGCCTTGTATTGTATGGTCCAGCTTTTATAACACACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATACCTTCTAGCCTTGTATTGTATGGTCCAGCTTTTATAACACACC  200

seq1  TTAAGAAACACACAAGAAGTAGGTGGATCGCCCCCTGCAACGGAACCAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAAACACACAAGAAGTAGGTGGATCGCCCCCTGCAACGGAACCAAG  250

seq1  CAGAGTGCACAGTCCATCTGCTCTGTGTTGCCATAACAGAAGACCACAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTGCACAGTCCATCTGCTCTGTGTTGCCATAACAGAAGACCACAGG  300

seq1  CTGTGTACATTATAAAGAACAGAGTCACAGTTATGAAGGCTGAGAAATCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTACATTATAAAGAACAGAGTCACAGTTATGAAGGCTGAGAAATCC  350

seq1  AAGCCTGCATGTTGTACTGTTCCATGGTGGGAGATGGGAGAGAGAGACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTGCATGTTGTACTGTTCCATGGTGGGAGATGGGAGAGAGAGACAG  400

seq1  AGACAGAGAATCAGAGAGTGGGGGGAGAGAGAAAAACAGAGAGAGAGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGAGAATCAGAGAGTGGGGGGAGAGAGAAAAACAGAGAGAGAGAGA  450

seq1  GAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAATGCACCAAAACCAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAATGCACCAAAACCAAG  500

seq1  AATCTTCCAGGGCCTTCTTAACCAGAGCTGTGTCCTCATAGGCCCCCTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTCCAGGGCCTTCTTAACCAGAGCTGTGTCCTCATAGGCCCCCTAC  550

seq1  TGATGGGGCATTAGCAGCCTGGCTTTTCTGTGTCAAGGTAGCTCCCTGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGGGCATTAGCAGCCTGGCTTTTCTGTGTCAAGGTAGCTCCCTGAC  600

seq1  CTTAGTCAGCCATTTGGTTTTCATGGTCAGTTCTTTCCCCTAGTTATTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTCAGCCATTTGGTTTTCATGGTCAGTTCTTTCCCCTAGTTATTAA  650

seq1  CAAGGCAATCAGTAGAGTTAACACCCCACACACCATGAGCATCCTCCATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCAATCAGTAGAGTTAACACCCCACACACCATGAGCATCCTCCATG  700

seq1  CAGGCCCTGTGACCTCCCTCCTTCCTCCTTGCTCTCTGCTTCATCTTCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCCTGTGACCTCCCTCCTTCCTCCTTGCTCTCTGCTTCATCTTCTG  750

seq1  GCTCAGGATAAACCAAGCTCAGGAGACTTGTAGTGGTTTGAATAGGATTG  800
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCA-GATAAACCAAGCTCAGGAGACTTGTAGTGGTTTGAATAGGATTG  799

seq1  GCTCCCATAGGCTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCATAGGCTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  849

seq1  GTGT  854
      ||||
seq2  GTGT  853