BAC Information

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BAC

Clone NameB6Ng01-163E14
Chromosome5 (Build37)6 (Build37)
Map Location 18,084,511 - 18,084,5764,333,895 - 4,335,070
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSema3c, Cd36, Gnat3, Gnai1, LOC100041818, LOC668167
Downstream gene4921504A21Rik, Magi2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163E14.bB6Ng01-163E14.g
ACCDH955913DH955914
length1,0051,174
definitionDH955913|Mus musculus domesticus DNA, BAC clone: B6Ng01-163E14, 5' end.DH955914|Mus musculus domesticus DNA, BAC clone: B6Ng01-163E14, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,084,511 - 18,084,576)(4,333,895 - 4,335,070)
sequence
gaattctcaacagagggatcttaaatggccaagaagcatctaaagaaatg
ttcagagtccttagtcattagagaaatgcaaatcgaaacgacactgagat
tccaccattcagaatatctaagattttaaaacaacaacaacaacaacaac
aaaccctcaggcaacagtagatgctgttgataatatagaaaaagaatact
cctccattgctggtgagcttgcaagtttgtagaaccactcaggaaatcaa
tctggtggttcctcagaaaactgaaaatagttctacctgaagacccagct
ataccacaactggtcatatactaaaaagaagctccaacatgtaagaagga
cacatgctccactatgctcatagcagccttatttataatagccagaagct
aaaaacaacccagatgtccgtcaacagaagaatggatacagaaaatgtgg
tacatttacacaatggaatactactcagttattaaaaatgacgacttcat
gaattttgcagaaaagtggatgggactagacaatattatctggagtgagg
taaccaacacccaaaaggacatacatagtatgtattcactgattagtgga
ttttagcccaaaaggttagaatactcataaaataactcacagaccaaacg
atgcttacaagaaagaaggccaaagtgtggatgctgcaatctgacttaga
agggggaacaaaataaacactggaggcagagagagggagggctctgagtg
ggaggtggaaaagagagttaggttcaggtatgggaagagacagatgagaa
gtctagatggccaggagaatgaatagaaatacgtagcagtgtagtgtggg
aaaggcagaggaatcactagaaagtcccagactgtagggatacaagagaa
tcccaggacccaatatggatgacattagtcgaaatgttcacagagggaga
tagaacctgaagagactacccctgcccagtagataggcacatctcccagt
tgagg
gaattccaagataagagtttggggacacaatcaattaatagcaatgcaat
tgtattgccaacaataggaagacaaatcatataatcacatattgattatt
ctgtttcaagccagagcaaatttcattatgttatacttatatgtagccct
gtgatatctctgagagatttttaaggatatttgtttgtttgtctgtttgt
ttggttttttttgtttttgtttttgttttcagaacagcatggagaaattg
acaaaaatgtaaggaaatttgcccctttgaggcatgagttacaaattaat
aacgtctttccaaagccttggaacaaagttaagaattagcataagaagtt
aaatactgaagaccaagaaagctgctgttaacatttgacaacattggctt
catttggaatgtgtttgcagctacagttgagattttattacagtgaacag
aataataaaatataataatcagaataagagaccagtaaagaatgaaatca
aatgtcactagtgaacagctatctggaaataataaataatgacatcgaca
tttgttagaaaatgcaatatcttatctttttgttcaaggcaaagtaaaag
aagtcttaagtaataagaaaaagtaataagttaaaagacacgaagtttca
agttgcactaatacaaatcactgaattatacttctttccatcttatgcat
atcagctttccctcctaccctacttttctctctccctccctcctcctttc
cctctcccccttcctttccatttctctcctttattattgattaggaaggg
cttctatgtactcagaaagggtactagtgctgatgaggaaacactcaaag
ctagtaaaaaaattgttctcctacagtaaatttaaatatataattttgca
tgagaaagagctgcaagatcattcaacattttaaatacattaaacgtttc
tccctttagggttgactttctgctcagattaatgagccaggggagtttgg
ctcatggcttataaaggcagtctgatgggtgacttaagataagttagaag
caaacttccctatgcctcattaattttgtatactccctcaagacttttct
gcattttcaagagattcagacgaacattaattatatggtactctctattt
agggtgagaaaagagccactaagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_18084511_18084576
seq2: B6Ng01-163E14.b_378_443 (reverse)

seq1  CTTCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTC  50
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CTTCTGGCTATTATAAATAAGGCTGCTATGAGCATAGTGGAGCATGTGTC  50

seq1  CTTCTTACCAGTTGGA  66
      ||||||||  ||||||
seq2  CTTCTTACATGTTGGA  66

seq1: chr6_4333895_4335070
seq2: B6Ng01-163E14.g_70_1243 (reverse)

seq1  ACTTAGTTGGCTCTTTTC-ATCCTTTAATATTGAG-ATCATATAATTAAT  48
      |||||| |||||||||||   || | ||||  ||| | ||||||||||||
seq2  ACTTAG-TGGCTCTTTTCTCACCCTAAATAGAGAGTACCATATAATTAAT  49

seq1  GTTTGTCTGAATCTCTTTGAAAATGCAGAAAAGTCTTGAGGAAGTATACA  98
      ||| ||||||||||| ||||||||||||||||||||||||| ||||||||
seq2  GTTCGTCTGAATCTC-TTGAAAATGCAGAAAAGTCTTGAGGGAGTATACA  98

seq1  AAATAATTGA-GCATAGGGAAGTCTGCTTCTAACTTATC-TAAGTCACCC  146
      |||| | ||| |||||||||||| ||||||||||||||| ||||||||||
seq2  AAATTAATGAGGCATAGGGAAGTTTGCTTCTAACTTATCTTAAGTCACCC  148

seq1  ATCAGACTGCCTTTAATAAGCCCATGAGCCAAACTCCCCTGGCTCATTAA  196
      |||||||||||||| ||||| |||||||||||||||||||||||||||||
seq2  ATCAGACTGCCTTT-ATAAG-CCATGAGCCAAACTCCCCTGGCTCATTAA  196

seq1  TCCTGAAGCAGAAAGTCAACCCTAAAGGGAGAAACGTTTAATGTATTTAA  246
      | ||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  T-CTG-AGCAGAAAGTCAACCCTAAAGGGAGAAACGTTTAATGTATTTAA  244

seq1  AATGTTGAATGATCTTGCAGCTCTTTCTCATGCAAAATTATATATTTAAA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTGAATGATCTTGCAGCTCTTTCTCATGCAAAATTATATATTTAAA  294

seq1  TTTACTGTAGGAGAACAATTTTTTTACTAGCTTTGAGTGTTTCCTCATCA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTGTAGGAGAACAATTTTTTTACTAGCTTTGAGTGTTTCCTCATCA  344

seq1  GCACTAGTACCCTTTCTGAGTACATAGAAGCCCTTCCTAATCAATAATAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTAGTACCCTTTCTGAGTACATAGAAGCCCTTCCTAATCAATAATAA  394

seq1  AGGAGAGAAATGGAAAGGAAGGGGGAGAGGGAAAGGAGGAGGGAGGGAGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAGAAATGGAAAGGAAGGGGGAGAGGGAAAGGAGGAGGGAGGGAGA  444

seq1  GAGAAAAGTAGGGTAGGAGGGAAAGCTGATATGCATAAGATGGAAAGAAG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAAGTAGGGTAGGAGGGAAAGCTGATATGCATAAGATGGAAAGAAG  494

seq1  TATAATTCAGTGATTTGTATTAGTGCAACTTGAAACTTCGTGTCTTTTAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTCAGTGATTTGTATTAGTGCAACTTGAAACTTCGTGTCTTTTAA  544

seq1  CTTATTACTTTTTCTTATTACTTAAGACTTCTTTTACTTTGCCTTGAACA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTACTTTTTCTTATTACTTAAGACTTCTTTTACTTTGCCTTGAACA  594

seq1  AAAAGATAAGATATTGCATTTTCTAACAAATGTCGATGTCATTATTTATT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATAAGATATTGCATTTTCTAACAAATGTCGATGTCATTATTTATT  644

seq1  ATTTCCAGATAGCTGTTCACTAGTGACATTTGATTTCATTCTTTACTGGT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCAGATAGCTGTTCACTAGTGACATTTGATTTCATTCTTTACTGGT  694

seq1  CTCTTATTCTGATTATTATATTTTATTATTCTGTTCACTGTAATAAAATC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTATTCTGATTATTATATTTTATTATTCTGTTCACTGTAATAAAATC  744

seq1  TCAACTGTAGCTGCAAACACATTCCAAATGAAGCCAATGTTGTCAAATGT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTGTAGCTGCAAACACATTCCAAATGAAGCCAATGTTGTCAAATGT  794

seq1  TAACAGCAGCTTTCTTGGTCTTCAGTATTTAACTTCTTATGCTAATTCTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGCAGCTTTCTTGGTCTTCAGTATTTAACTTCTTATGCTAATTCTT  844

seq1  AACTTTGTTCCAAGGCTTTGGAAAGACGTTATTAATTTGTAACTCATGCC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTGTTCCAAGGCTTTGGAAAGACGTTATTAATTTGTAACTCATGCC  894

seq1  TCAAAGGGGCAAATTTCCTTACATTTTTGTCAATTTCTCCATGCTGTTCT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGGGGCAAATTTCCTTACATTTTTGTCAATTTCTCCATGCTGTTCT  944

seq1  GAAAACAAAAACAAAAACAAAAAAAACCAAACAAACAGACAAACAAACAA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACAAAAACAAAAACAAAAAAAACCAAACAAACAGACAAACAAACAA  994

seq1  ATATCCTTAAAAATCTCTCAGAGATATCACAGGGCTACATATAAGTATAA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCTTAAAAATCTCTCAGAGATATCACAGGGCTACATATAAGTATAA  1044

seq1  CATAATGAAATTTGCTCTGGCTTGAAACAGAATAATCAATATGTGATTAT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATGAAATTTGCTCTGGCTTGAAACAGAATAATCAATATGTGATTAT  1094

seq1  ATGATTTGTCTTCCTATTGTTGGCAATACAATTGCATTGCTATTAATTGA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTTGTCTTCCTATTGTTGGCAATACAATTGCATTGCTATTAATTGA  1144

seq1  TTGTGTCCCCAAACTCTTATCTTGGAATTC  1176
      ||||||||||||||||||||||||||||||
seq2  TTGTGTCCCCAAACTCTTATCTTGGAATTC  1174