BAC Information

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BAC

Clone NameB6Ng01-163J13
Chromosome5 (Build37)
Map Location 11,542,055 - 11,809,966
singlet/doubletdoublet
Overlap geneEG623898, EG668001, LOC668008, EG668011, LOC668017, EG668021
Upstream geneLOC100041395, LOC242809, LOC623849, LOC100041408, LOC667880, EG667888, EG667901, EG667907, LOC667916, LOC100041472, EG545728, LOC100042819, LOC667942, LOC667948, EG667949, Speer1-ps1, EG667956, LOC667961, EG667967, LOC100042858, LOC667974, EG667986
Downstream geneLOC623998, EG668043, LOC545732, LOC384144, LOC100041626, EG668059, Sema3d, LOC668015, LOC100042917, LOC668069
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163J13.bB6Ng01-163J13.g
ACCDH956142DH956143
length7121,076
definitionDH956142|Mus musculus domesticus DNA, BAC clone: B6Ng01-163J13, 5' end.DH956143|Mus musculus domesticus DNA, BAC clone: B6Ng01-163J13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,542,055 - 11,542,781)(11,808,902 - 11,809,966)
sequence
gaattcagcatagcgacacactattggcttatacaaacatcagcagaaaa
attacatgtacgtgcagggtgtcagagttctgtgaattgttgactcagtt
tagatagccctgttatgtcctcacattcctctttatctttaaggttaagc
tgttcccaggaatatttaactacggggcatacccaggtttgcttttcttt
tttctcagccccaggcagcctctagactcacaaacaaccagcaatttctg
agtactttatatgacttacaggtcttgaaatttcatctttctttcactag
gaaagggaatataattctcttttgagcatgtgtccactgttaattttcca
tggtgcacttcacacagaaaatcagaataatcagaatgtgatgaggatga
atcattccatagcagctacgtcagtattgaagcagttgacaaaattctcc
tgggggggggggttatttgtagtactgggtaagaacactgatgtcacttc
tcccctatcagcctgcgtattaccttctggcactaagaaatgttgccggt
agggaagacattttctcgtggaattcaggctgatttctcgatgtcctgta
gcaaaactctgtggtctatccagcaatagggtcttaccaggaattactgg
cctcaggggtttttgtgagagaggcacgtccaagggatgaaattgacggt
gggtatttgttg
gaattcccccttttaaaattgtcagttagttacataactgttaactttat
gacttactgcatcatttgcgttattaatcacaaataatttgataaatatg
atgtcataaatgtattaatatattaaccttataatatttatatttagtta
ctacttgataaacaaatatggacaccaaattattttaggttttaatttaa
gattattttctggaatataaaattgctaatataattggtcacaaccctgt
tttgaaatgtaaacatattgtatgatatgtttaaacttgagagtacctat
tttctataaaccctacgttttagttatatgatttcattcaaacttttcct
tacagatttacaaaatataaaaactatcatcatttacacatcattcacag
ttaccatactatgcaacagcattccaaatttcttgccacgaattacaact
taaacagagtaatcaacttctgacatgacaccctctcttccacttttccc
tggtatccaccattctattcttatcattttagattactcatatgatcaca
ttcatgtggctctgatcgtcaattttcaggatttttcaaagaacataatg
ttctctctctacccatgtttgccatcaataacagaaattcattgttttgt
taatcctgaataacacgtcatgaaatataaggatatgtattttagtcaag
attttatatgtatcataactcaaatgtaatattatatattcataaatatt
taaattgacacatacttataaaagctcataaatatatgagcttcaaagta
atgattaaagtaaaatccactattttaactgatagtcttattaaagaacc
tcatatatgacatctgtaatgattatcatttaaaatcgggattaggttac
tacccctaaaagcaaagatccaagcaaataagtatttcttctagtttgta
attttgtattgatagttaaaactggaagaagggactacaatttctggcat
ggcactgtcatttgaagtatgataggaaatttgtgataaaaaaagacact
ggtcctttaattattttattttttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_11542055_11542781
seq2: B6Ng01-163J13.b_47_758

seq1  GAATTCAGCATATCGACACACTATTGGCTTATTCAAACATCAGCAGAAAA  50
      |||||||||||| ||||||||||||||||||| |||||||||||||||||
seq2  GAATTCAGCATAGCGACACACTATTGGCTTATACAAACATCAGCAGAAAA  50

seq1  ATTACATGTACGTGCAGGGTGTCAGAGTTCTGTGAATTGTTGACTCAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACATGTACGTGCAGGGTGTCAGAGTTCTGTGAATTGTTGACTCAGTT  100

seq1  TAGATAGCCCTGTTATGTCCTCACATTCCTCTTTATCTTTAAGGTTAAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAGCCCTGTTATGTCCTCACATTCCTCTTTATCTTTAAGGTTAAGC  150

seq1  TGTTCCCAGGAATATTTTAACTACGGGGCATACCCAGGTTTGCTTTTCTT  200
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TGTTCCCAGGAATA-TTTAACTACGGGGCATACCCAGGTTTGCTTTTCTT  199

seq1  TTTTCTCAGCCCCAGGCAGGCTCTAGACTCACAAACAACCAGCAATTTCT  250
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TTTTCTCAGCCCCAGGCAGCCTCTAGACTCACAAACAACCAGCAATTTCT  249

seq1  GAGTACTTTATATATGACTTACAGGTCTTGAAATTTCATCTTTCTTTCAC  300
      ||||||||  ||||||||||||||||||||||||||||||||||||||||
seq2  GAGTACTT--TATATGACTTACAGGTCTTGAAATTTCATCTTTCTTTCAC  297

seq1  TAGGAAAGGGAATATAATTCTCTTTTGAGCATGTGTCCACTGTTAATTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAAGGGAATATAATTCTCTTTTGAGCATGTGTCCACTGTTAATTTT  347

seq1  CCATGGTGCACTTGACACAGAAAATCAGAATAATCAGAATGTGATGAGGT  400
      ||||||||||||| ||||||||||||||||||||||||||||||||||| 
seq2  CCATGGTGCACTTCACACAGAAAATCAGAATAATCAGAATGTGATGAGGA  397

seq1  TGAATCATTCCATAGCAGCTACGTCAGTATTGAAGCAGTTGACAAACTTC  450
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TGAATCATTCCATAGCAGCTACGTCAGTATTGAAGCAGTTGACAAAATTC  447

seq1  TCCTTCGGGGGTGGGGGGCGGGGTGGTTATTTGTAGTACTGGGTAAGACC  500
      ||||           ||| |||| |||||||||||||||||||||||| |
seq2  TCCT-----------GGGGGGGGGGGTTATTTGTAGTACTGGGTAAGAAC  486

seq1  ACTGATGTCTCTTCTCCCCTATCTGCCTGCGTATTACCTTCTGGCACTAA  550
      ||||||||| ||||||||||||| ||||||||||||||||||||||||||
seq2  ACTGATGTCACTTCTCCCCTATCAGCCTGCGTATTACCTTCTGGCACTAA  536

seq1  GAAATGTAGCCAGTAGGGAAGACATTTTCACGTGGAATTCAGGCTGATTT  600
      ||||||| ||| ||||||||||||||||| ||||||||||||||||||||
seq2  GAAATGTTGCCGGTAGGGAAGACATTTTCTCGTGGAATTCAGGCTGATTT  586

seq1  CTCTATGTCCTGTAGCAAAACTCTGTGGTCTATCCAGCAATAGGGACTTA  650
      ||| ||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CTCGATGTCCTGTAGCAAAACTCTGTGGTCTATCCAGCAATAGGGTCTTA  636

seq1  CCATGTAGTTATGGCCTTAGTGTGTTATGTGAGAGAGGCACGGCAGAGGG  700
      ||| | | |  |||||| || |  || ||||||||||||||| |  ||||
seq2  CCAGGAATTACTGGCCTCAGGGGTTTTTGTGAGAGAGGCACGTCCAAGGG  686

seq1  ATGAAACTGACGGTCAGGTATGTGTTG  727
      |||||| |||||||  ||||| |||||
seq2  ATGAAATTGACGGT-GGGTATTTGTTG  712

seq1: chr5_11808902_11809966
seq2: B6Ng01-163J13.g_67_1142 (reverse)

seq1  AGAATAAATAAGATAATTAAAGGACCAGTGTC--TTTTTATCACAAATTT  48
      |||| |||||| ||||||||||||||||||||  ||||||||||||||||
seq2  AGAAAAAATAAAATAATTAAAGGACCAGTGTCTTTTTTTATCACAAATTT  50

seq1  -CTATCATACTTCAAATGACAGTG-CATGCCAGAAA-TGTAGTCCCTTC-  94
       ||||||||||||||||||||||| ||||||||||| |||||||||||| 
seq2  CCTATCATACTTCAAATGACAGTGCCATGCCAGAAATTGTAGTCCCTTCT  100

seq1  TCCAGTTTTAACTATC-ATACAAAATTACAAACTAG-AGGAATACTTATT  142
      |||||||||||||||| ||||||||||||||||||| || ||||||||||
seq2  TCCAGTTTTAACTATCAATACAAAATTACAAACTAGAAGAAATACTTATT  150

seq1  TGCTTGGATCTTTGCTTTTAGGGGTAGTAACCTAATCCCGATTTTAATTG  192
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TGCTTGGATCTTTGCTTTTAGGGGTAGTAACCTAATCCCGATTTTAAATG  200

seq1  ATAATCATTACAGATGTCATATATGAGGTTCTTTAATAAGACTATCAGTT  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCATTACAGATGTCATATATGAGGTTCTTTAATAAGACTATCAGTT  250

seq1  AAAATAGTGGATTTTACTTTAATCATTACTTTGAAGCTCATATATTTATG  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGTGGATTTTACTTTAATCATTACTTTGAAGCTCATATATTTATG  300

seq1  AGCTTTTATAAGTATGTGTCAATTTAAATATTTATGAATATATAATATTA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTTATAAGTATGTGTCAATTTAAATATTTATGAATATATAATATTA  350

seq1  CATTTGAGTTATGATACATATAAAATCTTGACT-AAATACATATCCTTAT  391
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CATTTGAGTTATGATACATATAAAATCTTGACTAAAATACATATCCTTAT  400

seq1  ATTTCATGACGTGTTATTCAGGATTAACAAAACAATGAATTTCTGTTATT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATGACGTGTTATTCAGGATTAACAAAACAATGAATTTCTGTTATT  450

seq1  GATGGC-AACATGGGTAGAGAGAGAACATTATGTTCTTTGAAAAATCCTG  490
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCAAACATGGGTAGAGAGAGAACATTATGTTCTTTGAAAAATCCTG  500

seq1  -AAGTAGACGATCAGAGCCACATGAATGTGATCATATGAGTAATCTAAAA  539
       || | ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTGACGATCAGAGCCACATGAATGTGATCATATGAGTAATCTAAAA  550

seq1  TGATAAGAATAGAATGGTGGATACCAGGGAAAAGTGGAAGAGAGGGTGTC  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAGAATAGAATGGTGGATACCAGGGAAAAGTGGAAGAGAGGGTGTC  600

seq1  ATGTCAGAAGTTGATTACTCTGTTTAAGTTGTAATTCGTGGCAAGAAATT  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCAGAAGTTGATTACTCTGTTTAAGTTGTAATTCGTGGCAAGAAATT  650

seq1  TGGAATGCTGTTGCATAGTATGGTAACTGTGAATGATGTGTAAATGATGA  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATGCTGTTGCATAGTATGGTAACTGTGAATGATGTGTAAATGATGA  700

seq1  TAGTTTTTATATTTTGTAAATCTGTAAGGAAAAGTTTGAATGAAATCATA  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTTTATATTTTGTAAATCTGTAAGGAAAAGTTTGAATGAAATCATA  750

seq1  TAACTAAAACGTAGGGTTTATAGAAAATAGGTACTCTCAAGTTTAAACAT  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTAAAACGTAGGGTTTATAGAAAATAGGTACTCTCAAGTTTAAACAT  800

seq1  ATCATACAATATGTTTACATTTCAAAACAGGGTTGTGACCAATTATATTA  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATACAATATGTTTACATTTCAAAACAGGGTTGTGACCAATTATATTA  850

seq1  GCAATTTTATATTCCAGAAAATAATCTTAAATTAAAACCTAAAATAATTT  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTTTATATTCCAGAAAATAATCTTAAATTAAAACCTAAAATAATTT  900

seq1  GGTGTCCATATTTGTTTATCAAGTAGTAACTAAATATAAATATTATAAGG  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCCATATTTGTTTATCAAGTAGTAACTAAATATAAATATTATAAGG  950

seq1  TTAATATATTAATACATTTATGACATCATATTTATCAAATTATTTGTGAT  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATATATTAATACATTTATGACATCATATTTATCAAATTATTTGTGAT  1000

seq1  TAATAACGCAAATGATGCAGTAAGTCATAAAGTTAACAGTTATGTAACTA  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAACGCAAATGATGCAGTAAGTCATAAAGTTAACAGTTATGTAACTA  1050

seq1  ACTGACAATTTTAAAAGGGGGAATTC  1065
      ||||||||||||||||||||||||||
seq2  ACTGACAATTTTAAAAGGGGGAATTC  1076