BAC Information

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BAC

Clone NameB6Ng01-163J23
Chromosome5 (Build37)
Map Location 19,405,970 - 19,544,188
singlet/doubletdoublet
Overlap geneMagi2
Upstream gene4921504A21Rik
Downstream geneLOC100041850, Phtf2, LOC622367, Tmem60, Rsbn1l, Ptpn12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163J23.bB6Ng01-163J23.g
ACCDH956162DH956163
length1,1441,157
definitionDH956162|Mus musculus domesticus DNA, BAC clone: B6Ng01-163J23, 5' end.DH956163|Mus musculus domesticus DNA, BAC clone: B6Ng01-163J23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,543,051 - 19,544,188)(19,405,970 - 19,407,114)
sequence
gaattcatttaaactcaaaatctcataaaaatgctaacctgatttgaata
agtttttaaaagggaaaagacaatattaggggaaatgggcttttaaaatt
aaatattaaataacactctcaaaatatagtttcaaaagagagcaagcagg
ggaaatagaaaagagaaaagtgagagtgtttctggtttgtggagagatac
tgtgcacaaaggacagtgctggtgatgtttcctaattccacttcaggaca
gtaaataggtgaactacatttgtggatgtgcaatggactcagacatcagt
ctgttaagacacatcccaacatttaccatatttttacaatccaatcattt
ccatttctcgttgatctctatagtaagagttcacataaaaatatagttta
aaaataactatttctagtctctaaagctctgtcctcacaactcagtgagg
ctgaaaacactctcaaagggaccaatagattgctaatctcaacaggctgc
tggcctcgtacattttggcttctcttttcctttggtatgagtaatatgac
caggtttctctgtgttattcccctcggatgttcatcaataaagaaaggta
ataatgactttgtaattcagtccctaccatttgtatatacttgaatgttt
gttatgtaaaaaaaggttctcataatttctagcagagtggaaaaactcac
aggtaagtactagagattatactcagacttagttaaggcacggttttttc
ttgctttccctattttcattaagttcctatatttttctcacttatggaca
gttttcatttgcttagttgattaactggttttgaggcagggcttttgctg
gtcacccagcctgaccttgaattcaggatccttccactttaaccttttga
gtacttgaaatatagacatgtatcgtgcatcactgtgccctctttacgga
gttactgataaacccatgttggtgatgcataaactttttccaagtctcac
agttctgactactggttagatagctttggcacaaaatgttcatgatgatc
atgaacttattaggtctttaagtagtcttttccaccaaggctagtgattt
tcataaattctcaattttactgaataccgtccaatttcttgtgc
gaattccctgcattttgcttttcttgccttagaatgggataatcaaacca
ctccctgtgacaattatggatacaaacacatatatataactgacttcaag
cagagcagcataatttgacagtgactgaaaaaatgcattaatttgacata
aagagtcaaaaagaagtgagttgtttctgatgaaaattgccatgtaccct
acaagggaataaaagaggaatttattacagatccacattctgcaagtact
agttacgtctaccaccatctacattgtaacacgaccatgaaattgacact
cacacaaactagcaatggtataattacccactacccagatcaattcatat
aattgaaaaaaagaaggcaggttccatgaccctgcctatgataaacctta
ttctcaggaaaaattaattttcttgttgtcaaagaagatctataatgtat
ttggttttgacttcatataaacacagtatcaatctacactaaaaaatgca
cttaaatgacaattgtgctatatatttaaaagaatttctatttgttagta
aatattttagattatgtagagatattccatagaaacactggaattattca
atagagaaaaggcagcagtttataagtgcaattgattttttttttaaaaa
gaattaacatttagcttattgctaaaatacaagtattggcttttgtaaag
catgtaatttctaacttttgcctttgaaaagcatacactatagcctaata
atgaatcaatatatattgttcatgattagttatatggaaggtggcagtgc
ttcctaatttgactgatagcatagccctgtgttcccatttggtttttgat
gctatgacaaaatagagacaaagcaatttgggggaaagaaattattttca
gcttaaaggttacagttccatcacgggaagccaaagcagtagttcaatac
aggagtcttcaggcaggaactgaagaagaagcccagggaagaacactact
tatggcttgctcagctctcttttctacatagcccaaggcttgccttttca
atgaatggtactgcttcaaatggtgctggcctgctggtttcaactaacac
ttaaagaaaaatggccttcccggaacattgggcaatgccaatctgatata
gaggtaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_19543051_19544188
seq2: B6Ng01-163J23.b_44_1187 (reverse)

seq1  GCACAAG-AATATGACAGTA-TCAGTAAAAATGGAGAATTTATGAAAATC  48
      ||||||| |||  ||| ||| ||||| ||||| |||||||||||||||||
seq2  GCACAAGAAATTGGACGGTATTCAGT-AAAATTGAGAATTTATGAAAATC  49

seq1  A-TAGCCTTTGGTGGAAAGGACTACTTAAAGACCTAATAAGTTTCATGAT  97
      | ||||| |||||||||| |||||||||||||||||||||| ||||||||
seq2  ACTAGCC-TTGGTGGAAAAGACTACTTAAAGACCTAATAAG-TTCATGAT  97

seq1  CATCATGGACA-TTTGTGCC-AAGCTATCTAACCAGTAGTCAGAACTGTG  145
      ||||||| ||| |||||||| |||||||||||||||||||||||||||||
seq2  CATCATGAACATTTTGTGCCAAAGCTATCTAACCAGTAGTCAGAACTGTG  147

seq1  AGACTTGGAAAAAGTTTATGCATCACCAACATGGGTTTATCAGTAACTCC  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTGGAAAAAGTTTATGCATCACCAACATGGGTTTATCAGTAACTCC  197

seq1  GTAAAGAGGGCACAGTGATGCACGATACATGTCTATATTTCAAGTACTCA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGAGGGCACAGTGATGCACGATACATGTCTATATTTCAAGTACTCA  247

seq1  AAAGGTTAAAGTGGAAGGATTCTGAATTCAAGGTCAGGCTGGGTGACCAG  295
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AAAGGTTAAAGTGGAAGGATCCTGAATTCAAGGTCAGGCTGGGTGACCAG  297

seq1  C-AAAGCCCTGCCTC-AAACCAGTTAATCAACTAAGCAAATG-AAACTGT  342
      | ||||||||||||| |||||||||||||||||||||||||| |||||||
seq2  CAAAAGCCCTGCCTCAAAACCAGTTAATCAACTAAGCAAATGAAAACTGT  347

seq1  CCATAAGTGAGAAAAATATAGGAACTTAATGAAAATAGGGAAAGCAAGAA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAGTGAGAAAAATATAGGAACTTAATGAAAATAGGGAAAGCAAGAA  397

seq1  AAAACCGTGCCTTAACTAAGTCTGAGTATAATCTCTAGTACTTACCTGTG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCGTGCCTTAACTAAGTCTGAGTATAATCTCTAGTACTTACCTGTG  447

seq1  AGTTTTTCCACTCTGCTAGAAATTATGAGAACCTTTTTTTACATAACAAA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTTCCACTCTGCTAGAAATTATGAGAACCTTTTTTTACATAACAAA  497

seq1  CATTCAAGTATATACAAATGGTAGGGACTGAATTAC-AAGTCATTATTAC  541
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CATTCAAGTATATACAAATGGTAGGGACTGAATTACAAAGTCATTATTAC  547

seq1  CTTTCTTTATTGATGAACATCCGAGGGGAATAACACAGAGAAACCTGGTC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTATTGATGAACATCCGAGGGGAATAACACAGAGAAACCTGGTC  597

seq1  ATATTACTCATACCAAAGGAAAAGAGAAGCCAAAATGTACGAGGCCAGCA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTACTCATACCAAAGGAAAAGAGAAGCCAAAATGTACGAGGCCAGCA  647

seq1  GCCTGTTGAGATTAGCAATCTATTGGTCCCTTTGAGAGTGTTTTCAGCCT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTTGAGATTAGCAATCTATTGGTCCCTTTGAGAGTGTTTTCAGCCT  697

seq1  CACTGAGTTGTGAGGACAGAGCTTTAGAGACTAGAAATAGTTATTTTTAA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAGTTGTGAGGACAGAGCTTTAGAGACTAGAAATAGTTATTTTTAA  747

seq1  ACTATATTTTTATGTGAACTCTTACTATAGAGATCAACGAGAAATGGAAA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATATTTTTATGTGAACTCTTACTATAGAGATCAACGAGAAATGGAAA  797

seq1  TGATTGGATTGTAAAAATATGGTAAATGTTGGGATGTGTCTTAACAGACT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGGATTGTAAAAATATGGTAAATGTTGGGATGTGTCTTAACAGACT  847

seq1  GATGTCTGAGTCCATTGCACATCCACAAATGTAGTTCACCTATTTACTGT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCTGAGTCCATTGCACATCCACAAATGTAGTTCACCTATTTACTGT  897

seq1  CCTGAAGTGGAATTAGGAAACATCACCAGCACTGTCCTTTGTGCACAGTA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAGTGGAATTAGGAAACATCACCAGCACTGTCCTTTGTGCACAGTA  947

seq1  TCTCTCCACAAACCAGAAACACTCTCACTTTTCTCTTTTCTATTTCCCCT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCACAAACCAGAAACACTCTCACTTTTCTCTTTTCTATTTCCCCT  997

seq1  GCTTGCTCTCTTTTGAAACTATATTTTGAGAGTGTTATTTAATATTTAAT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCTCTCTTTTGAAACTATATTTTGAGAGTGTTATTTAATATTTAAT  1047

seq1  TTTAAAAGCCCATTTCCCCTAATATTGTCTTTTCCCTTTTAAAAACTTAT  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAGCCCATTTCCCCTAATATTGTCTTTTCCCTTTTAAAAACTTAT  1097

seq1  TCAAATCAGGTTAGCATTTTTATGAGATTTTGAGTTTAAATGAATTC  1138
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATCAGGTTAGCATTTTTATGAGATTTTGAGTTTAAATGAATTC  1144

seq1: chr5_19405970_19407114
seq2: B6Ng01-163J23.g_70_1226

seq1  GAATTCCCTGCATTTTGCTTTTCTTGCCTTAGAATGGGATAATCAAACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTGCATTTTGCTTTTCTTGCCTTAGAATGGGATAATCAAACCA  50

seq1  CTCCCTGTGACAATTATGGATACAAACACATATATATAACTGACTTCAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTGTGACAATTATGGATACAAACACATATATATAACTGACTTCAAG  100

seq1  CAGAGCAGCATAATTTGACAGTGACTGAAAAAATGCATTAATTTGACATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCAGCATAATTTGACAGTGACTGAAAAAATGCATTAATTTGACATA  150

seq1  AAGAGTCAAAAAGAAGTGAGTTGTTTCTGATGAAAATTGCCATGTACCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTCAAAAAGAAGTGAGTTGTTTCTGATGAAAATTGCCATGTACCCT  200

seq1  ACAAGGGAATAAAAGAGGAATTTATTACAGATCCACATTCTGCAAGTACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGGAATAAAAGAGGAATTTATTACAGATCCACATTCTGCAAGTACT  250

seq1  AGTTACGTCTACCACCATCTACATTGTAACACGACCATGAAATTGACACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACGTCTACCACCATCTACATTGTAACACGACCATGAAATTGACACT  300

seq1  CACACAAACTAGCAATGGTATAATTACCCACTACCCAGATCAATTCATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAAACTAGCAATGGTATAATTACCCACTACCCAGATCAATTCATAT  350

seq1  AATTGAAAAAAAGAAGGCAGGTTCCATGACCCTGCCTATGATAAACCTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAAAAAAAGAAGGCAGGTTCCATGACCCTGCCTATGATAAACCTTA  400

seq1  TTCTCAGGAAAAATTAATTTTCTTGTTGTCAAAGAAGATCTATAATGTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAGGAAAAATTAATTTTCTTGTTGTCAAAGAAGATCTATAATGTAT  450

seq1  TTGGTTTTGACTTCATATAAACACAGTATCAATCTACACTAAAAAATGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTTGACTTCATATAAACACAGTATCAATCTACACTAAAAAATGCA  500

seq1  CTTAAATGACAATTGTGCTATATATTTAAAAGAATTTCTATTTGTTAGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAATGACAATTGTGCTATATATTTAAAAGAATTTCTATTTGTTAGTA  550

seq1  AATATTTTAGATTATGTAGAGATATTCCATAGAAACACTGGAATTATTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTTAGATTATGTAGAGATATTCCATAGAAACACTGGAATTATTCA  600

seq1  ATAGAGAAAAGGCAGCAGTTTATAAGTGCAATTGATTTTTTTTTTAAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGAAAAGGCAGCAGTTTATAAGTGCAATTGATTTTTTTTTTAAAAA  650

seq1  GAATTAACATTTAGCTTATTGCTAAAATACAAGTATTGGCTTTTGTAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTAACATTTAGCTTATTGCTAAAATACAAGTATTGGCTTTTGTAAAG  700

seq1  CATGTAATTTCTAACTTTTGCCTTTGAAAAGCATACACTATAGCCTAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAATTTCTAACTTTTGCCTTTGAAAAGCATACACTATAGCCTAATA  750

seq1  ATGAATCAATATATATTGTTCATGATTAGTTATATGGAAGGTGGCAGTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATCAATATATATTGTTCATGATTAGTTATATGGAAGGTGGCAGTGC  800

seq1  TTCCTAATTTGACTGATAGCATAGCCCTGTGTTCCCATTTGGTTTTTGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAATTTGACTGATAGCATAGCCCTGTGTTCCCATTTGGTTTTTGAT  850

seq1  GCTATGACAAAATAGAGACAAAGCAATTTGGGGGAAAGAAATTA-TTTCA  899
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GCTATGACAAAATAGAGACAAAGCAATTTGGGGGAAAGAAATTATTTTCA  900

seq1  GCTTAAAGGTTACAG-TCCATCACGGGAAGCCAAAGCAGTAGTTCAATAC  948
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GCTTAAAGGTTACAGTTCCATCACGGGAAGCCAAAGCAGTAGTTCAATAC  950

seq1  AGGAGTCTTCAGGCAGGAACTGAAGAAG-AGCCCAGGGAAGAACACTACT  997
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AGGAGTCTTCAGGCAGGAACTGAAGAAGAAGCCCAGGGAAGAACACTACT  1000

seq1  TATGGCCTGCTCAGCTCTCTTTCCTACATAGCCC-AGGCTTGCCTTTTCA  1046
      |||||| ||||||||||||||| ||||||||||| |||||||||||||||
seq2  TATGGCTTGCTCAGCTCTCTTTTCTACATAGCCCAAGGCTTGCCTTTTCA  1050

seq1  GTG-ATGGTACTGC-TCACAGTGTGCTGGGCCCTGCT-GTGTCAACTAAC  1093
       || |||||||||| ||| |  |||||||  |||||| || |||||||||
seq2  ATGAATGGTACTGCTTCAAATGGTGCTGG--CCTGCTGGTTTCAACTAAC  1098

seq1  ACTTAA--GAAAATG--CCTCCCGG-ACATGGCCAAAGGCCAATCTG--A  1136
      ||||||   ||||||  | |||||| |||| |   || |||||||||  |
seq2  ACTTAAAGAAAAATGGCCTTCCCGGAACATTGGGCAATGCCAATCTGATA  1148

seq1  TAGAGGTAA  1145
      |||||||||
seq2  TAGAGGTAA  1157