BAC Information

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BAC

Clone NameB6Ng01-163N03
Chromosome5 (Build37)
Map Location 27,235,491 - 27,451,606
singlet/doubletdoublet
Overlap geneDpp6, B930011P16Rik
Upstream geneLOC100038949, EG272714, EG545739, Speer4a, EG664804, LOC619645, LOC100039045, 5031410I06Rik, LOC434689, LOC664837, 4930584F24Rik
Downstream geneSpeer4b, Paxip1, Htr5a, EG433862, LOC231069, Insig1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163N03.bB6Ng01-163N03.g
ACCDH956310DH956311
length1,1171,202
definitionDH956310|Mus musculus domesticus DNA, BAC clone: B6Ng01-163N03, 5' end.DH956311|Mus musculus domesticus DNA, BAC clone: B6Ng01-163N03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,235,491 - 27,236,614)(27,450,404 - 27,451,606)
sequence
gaattctctctatctcctggctctgtagcatctattcctaacatcttccc
tcatcagactcttcttcacaggtctatgtcactcactatgtcactctctc
tgttactgtctatgcaggaaagtcagttgaacattagttcacatgacaca
cagcttcccagaagcaggaacatcttaaatatgtgaaccacaagtaaatg
tgtgcaaagatgtggctggggccatgtctcagtcatgaaatgattgccat
gcaagcacaaccacaaagaaatgcttaaagtccagcactggacatacctt
tggagtatcagccctgggacgcaggacagaagggtccctggagcttccta
gccatatagtccagcctaattcacaagctctgggctctagtgagagaccc
tgtctcaacaaacaaaggagaaaaccctgaaaacaatacccaatgttgac
ctctataagcacacacctacacgcatgcaagttggtaaaattagcacaaa
gaaattctcaaagccagaaggaagtagtcgcctcaggatgctttataagt
tgtattaggtagaacttcaatggagagggctgccctgtcttctctagagc
ctgagcaggctttcgctcacgtggcctctgggtctttgtacttggaccca
tcaatatgtccataggctaactttagtgacttgctgcctgccccacagcc
actccactgtctgcactctagcacttgctccctatactcacccctctgct
ctattcccgttcacagttactgtctgagctcctttattccctggggaggc
tgcactgggggagactacagtcagctacaaaccccattggtggtggtact
ccctgctctgcttagccaggggcacctgctggccaaaagttaggagaagt
ttctggaaaggttacttgaagaaagcctgatcctgagagcagagctcagt
gttctactgtgtggaaacatgctttcagatctagtggatcagcaagacag
aaaagactacatacacattattattctaaatcaaaggattgcctagttca
tgaaagaaagtaactcttggtcttcatgcctttttattggagggggaata
atttacctcagaacctt
gaattctcttataacaaatccatgcgaaaagcatcccatttgcatcttaa
aatttaattacatcttctagagagaagagcctgatctgtaaactatgtaa
tttatctgagtcttatatacccatttagttggggaagcccagtgaaacct
gatcctggaggcaccgaaaagaagctagcgtagctttaccatctagtatg
gagacaacaaatgccatgacataatgatctcattagtaagtgtcagagag
ggagaatgcggggctccctgtaagcactaggacaggggccaatggtattt
agggagatgtcccaaaaaaggattggcactataggaacacagaagaagtc
aaaggctaaagaaacaatgtccccaaagggtattttatgtcccatacaca
aaaacttccagacaagacaagacacacagagttcctgtctcaggagtgga
gaccagctacggagctaagattgaatacagggagtgtatgctccaagtca
gtgtggactcacaggaagtgtgtaagcacaggaacaatagactcaaagga
agtgtttgcccatgggatgaacgctcccaaggaaatatgtactcagaagg
atgtactcacaggaaatgtggcctcagaggggaaaatgcagtttgaagaa
gactatatgtaccagaagtgtgcactcactcagaggaagttcaaattcac
aggaagtgtgtattcaaaggactcatataacaggaagtcagagctactgc
catatccagagcttacaagactttattttttttattttccttttgtttta
tttttgatggcttgttccatgtacacaatgagttttgggtcatttgcatg
ctctagtccctccctcatccccctgtctccaaatgaaacccttcttctcc
acatgcccacaatctacttctatgccttattttagagtgatacaccaagt
ctactacaatttcatgagtgtgagtgggggtcttttcagaagcacctgca
atgacaacttgtactgaggaaatgacacctccctcccctgcagccaatgg
cttgttcactattcccaaggtagtgggaattctgaactctttcccaatag
aatggtgaggaatgtagctcccaattttggaccgaagcattcagtaactc
acattagtggttacctctggtaacctaagcaatagtcatgtccagtccaa
aa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_27235491_27236614
seq2: B6Ng01-163N03.b_45_1161

seq1  GAATTCTCTCTATCTCCTGGCTCTGTAGCATCTATTCCTAACATCTTCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCTATCTCCTGGCTCTGTAGCATCTATTCCTAACATCTTCCC  50

seq1  TCATCAGACTCTTCTTCACAGGTCTATGTCACTCACTATGTCACTCTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAGACTCTTCTTCACAGGTCTATGTCACTCACTATGTCACTCTCTC  100

seq1  TGTTACTGTCTATGCAGGAAAGTCAGTTGAACATTAGTTCACATGACACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACTGTCTATGCAGGAAAGTCAGTTGAACATTAGTTCACATGACACA  150

seq1  CAGCTTCCCAGAAGCAGGAACATCTTAAATATGTGAACCACAAGTAAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTCCCAGAAGCAGGAACATCTTAAATATGTGAACCACAAGTAAATG  200

seq1  TGTGCAAAGATGTGGCTGGGGCCATGTCTCAGTCATGAAATGATTGCCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCAAAGATGTGGCTGGGGCCATGTCTCAGTCATGAAATGATTGCCAT  250

seq1  GCAAGCACAACCACAAAGAAATGCTTAAAGTCCAGCACTGGACATACCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCACAACCACAAAGAAATGCTTAAAGTCCAGCACTGGACATACCTT  300

seq1  TGGAGTATCAGCCCTGGGACGCAGGACAGAAGGGTCCCTGGAGCTTCCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTATCAGCCCTGGGACGCAGGACAGAAGGGTCCCTGGAGCTTCCTA  350

seq1  GCCATATAGTCCAGCCTAATTCACAAGCTCTGGGCTCTAGTGAGAGACCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATATAGTCCAGCCTAATTCACAAGCTCTGGGCTCTAGTGAGAGACCC  400

seq1  TGTCTCAACAAACAAAGGAGAAAACCCTGAAAACAATACCCAATGTTGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCAACAAACAAAGGAGAAAACCCTGAAAACAATACCCAATGTTGAC  450

seq1  CTCTATAAGCACACACCTACACGCATGCAAGTTGGTAAAATTAGCACAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATAAGCACACACCTACACGCATGCAAGTTGGTAAAATTAGCACAAA  500

seq1  GAAATTCTCAAAGCCAGAAGGAAGTAGTCGCCTCAGGATGCTTTATAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTCTCAAAGCCAGAAGGAAGTAGTCGCCTCAGGATGCTTTATAAGT  550

seq1  TGTATTAGGTAGAACTTCAATGGAGAGGGCTGCCCTGTCTTCTCTAGAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTAGGTAGAACTTCAATGGAGAGGGCTGCCCTGTCTTCTCTAGAGC  600

seq1  CTGAGCAGGCTTTCGCTCACGTGGCCTCTGGGTCTTTGTACTTGGACCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCAGGCTTTCGCTCACGTGGCCTCTGGGTCTTTGTACTTGGACCCA  650

seq1  TCAATATGTCCATAGGCTAACTTTAGTGACTTGCTGCCTGCCCCACAGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATATGTCCATAGGCTAACTTTAGTGACTTGCTGCCTGCCCCACAGCC  700

seq1  ACTCCACTGTCTGCACTCTAGCACTTGCTCCCTATACTCACCCCTCTGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCACTGTCTGCACTCTAGCACTTGCTCCCTATACTCACCCCTCTGCT  750

seq1  CTATTCCCGTTCACAGTTACTGTCTGAGCTCCTTTATTCCCTGGGGAGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCCCGTTCACAGTTACTGTCTGAGCTCCTTTATTCCCTGGGGAGGC  800

seq1  TGCACTGGGGGAGACTACAGTCAGCTACAAACCCCATTGGTGGTGGTACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTGGGGGAGACTACAGTCAGCTACAAACCCCATTGGTGGTGGTACT  850

seq1  CCCTGCTCTGCTTAGCCAGGGGCACCTGCTGGCCAAAAGTTTAGGAGAAG  900
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CCCTGCTCTGCTTAGCCAGGGGCACCTGCTGGCCAAAAG-TTAGGAGAAG  899

seq1  TTTCTGG-AAGGTTAC-TGAAGAAAGCCTGATCCTGAGAGCAGAGCTCAG  948
      ||||||| |||||||| |||||||||||||||||||||||||||||||||
seq2  TTTCTGGAAAGGTTACTTGAAGAAAGCCTGATCCTGAGAGCAGAGCTCAG  949

seq1  TGTTCTACTGTGTGGAAACATGCTTTCAAGATCTAGTGGATCAGGCAAGA  998
      ||||||||||||||||||||||||||| ||||||||||||||| ||||||
seq2  TGTTCTACTGTGTGGAAACATGCTTTC-AGATCTAGTGGATCA-GCAAGA  997

seq1  CAAGAAAAGACTACATACACATTATTATCCTAAAATCAAAGGATTTGCCT  1048
      | |||||||||||||||||||||||||| || ||||||||||| ||||||
seq2  C-AGAAAAGACTACATACACATTATTATTCT-AAATCAAAGGA-TTGCCT  1044

seq1  AGTTCATGAAAGAAAGTAACTC-TGGTCTTCATGCCCTTTTTATTTGGAG  1097
      |||||||||||||||||||||| ||||||||||| |||||||| ||||||
seq2  AGTTCATGAAAGAAAGTAACTCTTGGTCTTCATG-CCTTTTTA-TTGGAG  1092

seq1  GGGGAAATTAATTTACCTCAGAACCTT  1124
      ||||||  |||||||||||||||||||
seq2  GGGGAA--TAATTTACCTCAGAACCTT  1117

seq1: chr5_27450404_27451606
seq2: B6Ng01-163N03.g_68_1269 (reverse)

seq1  TTTTGGACATGGCATGACTATTGCTCTTATGTGTTTACCATGAGGTAACC  50
      ||||||||  | |||||||||||  ||||   | |||||| |||||||||
seq2  TTTTGGACTGGACATGACTATTG--CTTA---GGTTACCA-GAGGTAACC  44

seq1  ACTA---TG-GTTACTGAAAGGCTC-GTCACAAAATGGGAGCCTACAATA  95
      ||||   || ||||||||| |  || |||  ||| |||||| |||| || 
seq2  ACTAATGTGAGTTACTGAATGCTTCGGTCCAAAATTGGGAG-CTAC-ATT  92

seq1  CCTCA-CAATCTATTGGGGAAGAGCTCAGATTTCCCACTACCTTGGGAAT  144
      ||||| || ||||||||| ||||| ||||| |||||||||||||||||||
seq2  CCTCACCATTCTATTGGGAAAGAGTTCAGAATTCCCACTACCTTGGGAAT  142

seq1  TGTTGACAAG-CAATGGCTGCAGGGGAGGGA-GTGTCATTTCTTCAGTAC  192
       ||  ||||| || ||||||||||||||||| |||||||||| |||||||
seq2  AGTGAACAAGCCATTGGCTGCAGGGGAGGGAGGTGTCATTTCCTCAGTAC  192

seq1  AAGTTGTCATTGCAGGTGCTTCTGAAAGGAACCCCCACTCACACTCATGA  242
      ||||||||||||||||||||||||||| | ||||||||||||||||||||
seq2  AAGTTGTCATTGCAGGTGCTTCTGAAAAG-ACCCCCACTCACACTCATGA  241

seq1  AATTGTAGTTAGACTTGGTGTATCACTCTAAAATAAGGCATAGAAGTAGA  292
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTAG-TAGACTTGGTGTATCACTCTAAAATAAGGCATAGAAGTAGA  290

seq1  TTGTGGGCCTGTGGAGAAGAAGGGTTTCATTTGGAGACAGGGGGATGAGG  342
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGGCATGTGGAGAAGAAGGGTTTCATTTGGAGACAGGGGGATGAGG  340

seq1  GAGGGACTAGAGCATGCAAATGA-CCATAACTCATTGTGTACATGGAACA  391
      ||||||||||||||||||||||| ||| ||||||||||||||||||||||
seq2  GAGGGACTAGAGCATGCAAATGACCCAAAACTCATTGTGTACATGGAACA  390

seq1  AGCCATCAAAAATAAAACAAAAGGAAAATAAAAAAAATAAAGTCTTGTAA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATCAAAAATAAAACAAAAGGAAAATAAAAAAAATAAAGTCTTGTAA  440

seq1  GCTCTGGATATGGCAGTAGCTCTGACTTCCTGTTATATGAGTCCTTTGAA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGGATATGGCAGTAGCTCTGACTTCCTGTTATATGAGTCCTTTGAA  490

seq1  TACACACTTCCTGTGAATTTGAACTTCCTCTGAGTGAGTGCACACTTCTG  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACACTTCCTGTGAATTTGAACTTCCTCTGAGTGAGTGCACACTTCTG  540

seq1  GTACATATAGTCTTCTTCAAACTGCATTTTCCCCTCTGAGGCCACATTTC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATATAGTCTTCTTCAAACTGCATTTTCCCCTCTGAGGCCACATTTC  590

seq1  CTGTGAGTACATCCTTCTGAGTACATATTTCCTTGGGAGCGTTCATCCCA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAGTACATCCTTCTGAGTACATATTTCCTTGGGAGCGTTCATCCCA  640

seq1  TGGGCAAACACTTCCTTTGAGTCTATTGTTCCTGTGCTTACACACTTCCT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAAACACTTCCTTTGAGTCTATTGTTCCTGTGCTTACACACTTCCT  690

seq1  GTGAGTCCACACTGACTTGGAGCATACACTCCCTGTATTCAATCTTAGCT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTCCACACTGACTTGGAGCATACACTCCCTGTATTCAATCTTAGCT  740

seq1  CCGTAGCTGGTCTCCACTCCTGAGACAGGAACTCTGTGTGTCTTGTCTTG  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTAGCTGGTCTCCACTCCTGAGACAGGAACTCTGTGTGTCTTGTCTTG  790

seq1  TCTGGAAGTTTTTGTGTATGGGACATAAAATACCCTTTGGGGACATTGTT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAAGTTTTTGTGTATGGGACATAAAATACCCTTTGGGGACATTGTT  840

seq1  TCTTTAGCCTTTGACTTCTTCTGTGTTCCTATAGTGCCAATCCTTTTTTG  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAGCCTTTGACTTCTTCTGTGTTCCTATAGTGCCAATCCTTTTTTG  890

seq1  GGACATCTCCCTAAATACCATTGGCCCCTGTCCTAGTGCTTACAGGGAGC  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATCTCCCTAAATACCATTGGCCCCTGTCCTAGTGCTTACAGGGAGC  940

seq1  CCCGCATTCTCCCTCTCTGACACTTACTAATGAGATCATTATGTCATGGC  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGCATTCTCCCTCTCTGACACTTACTAATGAGATCATTATGTCATGGC  990

seq1  ATTTGTTGTCTCCATACTAGATGGTAAAGCTACGCTAGCTTCTTTTCGGT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTGTCTCCATACTAGATGGTAAAGCTACGCTAGCTTCTTTTCGGT  1040

seq1  GCCTCCAGGATCAGGTTTCACTGGGCTTCCCCAACTAAATGGGTATATAA  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCAGGATCAGGTTTCACTGGGCTTCCCCAACTAAATGGGTATATAA  1090

seq1  GACTCAGATAAATTACATAGTTTACAGATCAGGCTCTTCTCTCTAGAAGA  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAGATAAATTACATAGTTTACAGATCAGGCTCTTCTCTCTAGAAGA  1140

seq1  TGTAATTAAATTTTAAGATGCAAATGGGATGCTTTTCGCATGGATTTGTT  1191
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATTAAATTTTAAGATGCAAATGGGATGCTTTTCGCATGGATTTGTT  1190

seq1  ATAAGAGAATTC  1203
      ||||||||||||
seq2  ATAAGAGAATTC  1202