BAC Information

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BAC

Clone NameB6Ng01-163P10
Chromosome5 (Build37)
Map Location 41,130,925 - 41,265,062
singlet/doubletdoublet
Overlap genenone
Upstream geneHs3st1, EG665839, LOC100040502
Downstream geneLOC208522, Rab28, Bapx1, A230054D04Rik, LOC384308
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163P10.bB6Ng01-163P10.g
ACCDH956415DH956416
length1,1351,181
definitionDH956415|Mus musculus domesticus DNA, BAC clone: B6Ng01-163P10, 5' end.DH956416|Mus musculus domesticus DNA, BAC clone: B6Ng01-163P10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,263,926 - 41,265,062)(41,130,925 - 41,132,124)
sequence
gaattcttcacccatcttgggttcaatgaatcaaggaatgtagggtaaga
aattaaaagtctacattttcaagagcctctttagcttcactcaataaata
atgtaaaataatattcacacttatctttgggcatttctgtctaggttttg
agtatgcatgtgagggtaaaatgtgtctgtgtgtgcacacgcgcgtatgt
ttatgcacatttatatgtctgaaagagagcatttttctagtgctaagtgg
ccatctgagaataaccttagttgttactgctaaatttttttgagacagtc
tttttgtttttctccactacatttgtcaagggtgactgttctgcaagctg
cctatgactctcctatttcagcctctcatatacccatagaaattctgtaa
ttagaagtgcttcttttaggcatctagagataggaggaattctatagagt
taaactcccttcctgaccattgtccagcaagcacttttaccaatgcactc
ttcttctcagtgatcaatccaattctcttatcatcaactttcatattttc
ttcttatctatcaatctaagtctcttatcaacagctttcatatcatgaat
tgtatatgaagcctcaccatgagaggtgagtctttctgaacagtgctttt
aaaggctgtataatataagctaagaaactgctccattttatgtcagcatc
ctatttaacattagatgacttaggatgcctgtcactgtatgagtagtatt
attgggtatctcttctagcgtagagtcccactcttttgcctatagtatga
tagaattttgaacagtgcataccattgctttcctgacgtatgctctttta
tttttgaaaatatgaagtccaaaaccattctaaattgtcatctttaagta
gacatatatggttgaatattattcaatgaaggttgtgggaacctcattat
attttcagtttcctccctgaagctgacttagacaacttatacaggaaaca
ataatgtacagaataattttaaatttggcctgctgcaaacttgttttact
tttgtctttgactatattcttattgaactttataaacactttatgcattt
ttgatttaaattcttttacttttttttatatatta
gaattcttcgcaggacaatccttaatatgaaacagcatcattaaaaaaat
aaagtggtccagatctttatggaagaatgaggagctaatgggagattcta
gatctatagggaagtgatgtgaattgcagaacctcagttgagaagaaatg
actgcaaaatcagaaaagataatgaacactgtaactagtgagaaaattga
tgtgaaggtgaaagagcagatttttttaatgtttagttggaaactaaaca
aaaagggatatcttggaaagaaaagagaggaacactagtacctcgggaca
tcatgccagatcaaaggacagctgtgtgatcatgtttcaagcacaggact
acagggaataaagtctcaaccatgcatcctgctgcttccgacctcctctc
tggacaaaaatgagatgaagtccataacaaataagacctacatgcaaaac
agagggcatgttctacatggggtgaattggacagtatctcattataaaaa
ctcgacttggaattggtggccttatattcagatcctgatgtgtgtgcatt
taaagggtgtgtgttgttaaataagtttgaaaagactgatgatacttctc
aattattgcttagaaccagtagacatatatatggtgttaaaaatgaaatg
ccactaatagtgtctgtgtcagaaaaatcccaattaaagaaagccttttg
tacctttgtgctatgccaaagttccatgtttcatgactctaatagctgag
aaattgaggtttcttctaaactttcttaatcactgaggtgcaaatcaaaa
ctttcttcttggctcacttttaatgagcagggcaaatattcttcaatcaa
accgtcagaagttcattacgagcagaagctactatctttacatcctctgt
ttttaccgcttggcaaggtactgtcatcctttgccttttctacctgcctg
agtctctgtgaatattatctgcaggtcttcttcctttcatttgatgagcc
agtcctctgcagagcagtcagtgatctctagcatgcagcctcatttccta
tcagatagatctggattattttactgccccagacttctttcttgtgtcaa
aagaataataattccttctgaaccttatctaattcactacagagaaggaa
aatcttgctgcttacatgacaagacatctaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_41263926_41265062
seq2: B6Ng01-163P10.b_44_1178 (reverse)

seq1  TAATA---AAAAAAAAGTAAAAAGAAAAATTTAAATACAAAAAATGCATA  47
      |||||   ||||||||||||    || |||||||||   |||||||||||
seq2  TAATATATAAAAAAAAGTAA----AAGAATTTAAAT--CAAAAATGCATA  44

seq1  AAGTGTTTAATAAAGTCCAATATGAATATAAGTCAAAGACAAAAGTAAAA  97
      |||||||| ||||||| ||||| |||||| ||||||||||||||||||||
seq2  AAGTGTTT-ATAAAGTTCAATAAGAATAT-AGTCAAAGACAAAAGTAAAA  92

seq1  CAAGTTTGCAGCAGGC--AAATTAAAATTATTCTGTACATTATTGTTTCC  145
      ||||||||||||||||  || |||||||||||||||||||||||||||||
seq2  CAAGTTTGCAGCAGGCCAAATTTAAAATTATTCTGTACATTATTGTTTCC  142

seq1  TGTAT-AGTTGTCTAAGTCAGCTTCAGGGAGGAAACTGAAAATATAATGA  194
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAAGTTGTCTAAGTCAGCTTCAGGGAGGAAACTGAAAATATAATGA  192

seq1  GGTTCCCACAACCTTCATTGAATAATATTCAACCATATATGTCTACTTAA  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCCACAACCTTCATTGAATAATATTCAACCATATATGTCTACTTAA  242

seq1  AGATGACAATTTAGAATGGTTTTGGACTTCATATTTTCAAAAATAAAAGA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGACAATTTAGAATGGTTTTGGACTTCATATTTTCAAAAATAAAAGA  292

seq1  GCATACGTCAGGAAAGCAATGGTATGCACTGTTCAAAATTCTATCATACT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATACGTCAGGAAAGCAATGGTATGCACTGTTCAAAATTCTATCATACT  342

seq1  ATAGGCAAAAGAGTGGGACTCTACGCTAGAAGAGATACCCAATAATACTA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGCAAAAGAGTGGGACTCTACGCTAGAAGAGATACCCAATAATACTA  392

seq1  CTCATACAGTGACAGGCATCCTAAGTCATCTAATGTTAAATAGGATGCTG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATACAGTGACAGGCATCCTAAGTCATCTAATGTTAAATAGGATGCTG  442

seq1  ACATAAAATGGAGCAGTTTCTTAGCTTATATTATACAGCCTTTAAAAGCA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAAATGGAGCAGTTTCTTAGCTTATATTATACAGCCTTTAAAAGCA  492

seq1  CTGTTCAGAAAGACTCACCTCTCATGGTGAGGCTTCATATACAATTCATG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCAGAAAGACTCACCTCTCATGGTGAGGCTTCATATACAATTCATG  542

seq1  ATATGAAAGCTGTTGATAAGAGACTTAGATTGATAGATAAGAAGAAAATA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAAAGCTGTTGATAAGAGACTTAGATTGATAGATAAGAAGAAAATA  592

seq1  TGAAAGTTGATGATAAGAGAATTGGATTGATCACTGAGAAGAAGAGTGCA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGTTGATGATAAGAGAATTGGATTGATCACTGAGAAGAAGAGTGCA  642

seq1  TTGGTAAAAGTGCTTGCTGGACAATGGTCAGGAAGGGAGTTTAACTCTAT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTAAAAGTGCTTGCTGGACAATGGTCAGGAAGGGAGTTTAACTCTAT  692

seq1  AGAATTCCTCCTATCTCTAGATGCCTAAAAGAAGCACTTCTAATTACAGA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTCCTCCTATCTCTAGATGCCTAAAAGAAGCACTTCTAATTACAGA  742

seq1  ATTTCTATGGGTATATGAGAGGCTGAAATAGGAGAGTCATAGGCAGCTTG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTATGGGTATATGAGAGGCTGAAATAGGAGAGTCATAGGCAGCTTG  792

seq1  CAGAACAGTCACCCTTGACAAATGTAGTGGAGAAAAACAAAAAGACTGTC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACAGTCACCCTTGACAAATGTAGTGGAGAAAAACAAAAAGACTGTC  842

seq1  TCAAAAAAATTTAGCAGTAACAACTAAGGTTATTCTCAGATGGCCACTTA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAAAATTTAGCAGTAACAACTAAGGTTATTCTCAGATGGCCACTTA  892

seq1  GCACTAGAAAAATGCTCTCTTTCAGACATATAAATGTGCATAAACATACG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTAGAAAAATGCTCTCTTTCAGACATATAAATGTGCATAAACATACG  942

seq1  CGCGTGTGCACACACAGACACATTTTACCCTCACATGCATACTCAAAACC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGTGTGCACACACAGACACATTTTACCCTCACATGCATACTCAAAACC  992

seq1  TAGACAGAAATGCCCAAAGATAAGTGTGAATATTATTTTACATTATTTAT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACAGAAATGCCCAAAGATAAGTGTGAATATTATTTTACATTATTTAT  1042

seq1  TGAGTGAAGCTAAAGAGGCTCTTGAAAATGTAGACTTTTAATTTCTTACC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGAAGCTAAAGAGGCTCTTGAAAATGTAGACTTTTAATTTCTTACC  1092

seq1  CTACATTCCTTGATTCATTGAACCCAAGATGGGTGAAGAATTC  1137
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATTCCTTGATTCATTGAACCCAAGATGGGTGAAGAATTC  1135

seq1: chr5_41130925_41132124
seq2: B6Ng01-163P10.g_68_1248

seq1  GAATTCTTCGCAGGACAATCCTTAATATGAAACAGCATCATTAAAAAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCGCAGGACAATCCTTAATATGAAACAGCATCATTAAAAAAAT  50

seq1  AAAGTGGTCCAGATCTTTATGGAAGAATGAGGAGCTAATGGGAGATTCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGGTCCAGATCTTTATGGAAGAATGAGGAGCTAATGGGAGATTCTA  100

seq1  GATCTATAGGGAAGTGATGTGAATTGCAGAACCTCAGTTGAGAAGAAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTATAGGGAAGTGATGTGAATTGCAGAACCTCAGTTGAGAAGAAATG  150

seq1  ACTGCAAAATCAGAAAAGATAATGAACACTGTAACTAGTGAGAAAATTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCAAAATCAGAAAAGATAATGAACACTGTAACTAGTGAGAAAATTGA  200

seq1  TGTGAAGGTGAAAGAGCAGATTTTTTTAATGTTTAGTTGGAAACTAAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAGGTGAAAGAGCAGATTTTTTTAATGTTTAGTTGGAAACTAAACA  250

seq1  AAAAGGGATATCTTGGAAAGAAAAGAGAGGAACACTAGTACCTCGGGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGGATATCTTGGAAAGAAAAGAGAGGAACACTAGTACCTCGGGACA  300

seq1  TCATGCCAGATCAAAGGACAGCTGTGTGATCATGTTTCAAGCACAGGACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCCAGATCAAAGGACAGCTGTGTGATCATGTTTCAAGCACAGGACT  350

seq1  ACAGGGAATAAAGTCTCAACCATGCATCCTGCTGCTTCCGACCTCCTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGAATAAAGTCTCAACCATGCATCCTGCTGCTTCCGACCTCCTCTC  400

seq1  TGGACAAAAATGAGATGAAGTCCATAACAAATAAGACCTACATGCAAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAAAAATGAGATGAAGTCCATAACAAATAAGACCTACATGCAAAAC  450

seq1  AGAGGGCATGTTCTACATGGGGTGAATTGGACAGTATCTCATTATAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGCATGTTCTACATGGGGTGAATTGGACAGTATCTCATTATAAAAA  500

seq1  CTCGACTTGGAATTGGTGGCCTTATATTCAGATCCTGATGTGTGTGCATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGACTTGGAATTGGTGGCCTTATATTCAGATCCTGATGTGTGTGCATT  550

seq1  TAAAGGGTGTGTGTTGTTAAATAAGTTTGAAAAGACTGATGATACTTCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGGTGTGTGTTGTTAAATAAGTTTGAAAAGACTGATGATACTTCTC  600

seq1  AATTATTGCTTAGAACCAGTAGACATATATATGGTGTTAAAAATGAAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTGCTTAGAACCAGTAGACATATATATGGTGTTAAAAATGAAATG  650

seq1  CCACTAATAGTGTCTGTGTCAGAAAAATCCCAATTAAAGAAAGCCTTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTAATAGTGTCTGTGTCAGAAAAATCCCAATTAAAGAAAGCCTTTTG  700

seq1  TACCTTTGTGCTATGCCAAAGTTCCATGTTTCATGACTCTAATAGCTGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTTGTGCTATGCCAAAGTTCCATGTTTCATGACTCTAATAGCTGAG  750

seq1  AAATTGAGGTTTCTTCTAAACTTTCTTAATCACTGAGGTGCAAATCAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGAGGTTTCTTCTAAACTTTCTTAATCACTGAGGTGCAAATCAAAA  800

seq1  CTTTCTTCTTGGCTCACTTTTAATGAGCAGGGCAAATATTCTTCAATCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTCTTGGCTCACTTTTAATGAGCAGGGCAAATATTCTTCAATCAA  850

seq1  ACCGTCAGAAGTTCATTACGAGCAGAAGCTACTATCTTTACATCCTCTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGTCAGAAGTTCATTACGAGCAGAAGCTACTATCTTTACATCCTCTGT  900

seq1  TTTTACCGCTTGGCAAGGTACTGTCATCCTTTGCCTTTTCTACCTGCCTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTTTACCGCTTGGCAAGGTACTGTCATCCTTTGCCTTTTCTACCTGCCT-  949

seq1  GAGTCTCTGTGAATAATTATCTGCAGGTCTTCTTCCTTTCATTTGATGAG  1000
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GAGTCTCTGTGAAT-ATTATCTGCAGGTCTTCTTCCTTTCATTTGATGAG  998

seq1  CCAGTCCTCTGCAGAGCAGTCAGTGATCTCTAGCATGCAGCCTCATTTCC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCCTCTGCAGAGCAGTCAGTGATCTCTAGCATGCAGCCTCATTTCC  1048

seq1  TAATCAGATAGATCTGGGATGTATTTTACTGCTCCAGACTTCTCTCTTGT  1100
      | ||||||||||||| |||| ||||||||||| |||||||||| ||||||
seq2  T-ATCAGATAGATCT-GGAT-TATTTTACTGCCCCAGACTTCTTTCTTGT  1095

seq1  GGTCAAGAG-ATAATAATACCTCTTGAACCTTATTCTAATTTCACATACT  1149
       ||||| || |||||||| |||  ||||||||| ||||| ||||| ||| 
seq2  -GTCAAAAGAATAATAATTCCTTCTGAACCTTA-TCTAA-TTCAC-TAC-  1140

seq1  AGATGAAGGAAAAACTCTTGGGCTGGCTTAACATTGACACAAGACATCTA  1199
      ||| |||||||||  ||||  ||| |||| ||||    ||||||||||||
seq2  AGA-GAAGGAAAA--TCTT--GCT-GCTT-ACAT---GACAAGACATCTA  1180

seq1  A  1200
      |
seq2  A  1181