BAC Information

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BAC

Clone NameB6Ng01-164K23
Chromosome5 (Build37)
Map Location 56,875,119 - 56,949,451
singlet/doubletdoublet
Overlap genenone
Upstream geneEG666405
Downstream geneLOC100041335, LOC100041349, LOC666455, LOC625721
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-164K23.bB6Ng01-164K23.g
ACCDH956941DH956942
length1,1361,080
definitionDH956941|Mus musculus domesticus DNA, BAC clone: B6Ng01-164K23, 5' end.DH956942|Mus musculus domesticus DNA, BAC clone: B6Ng01-164K23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,875,119 - 56,876,265)(56,948,377 - 56,949,451)
sequence
gaattcctgattcccctggttctgtagccaaattacagagattttcatca
gcatttaatattaaattcaaattaaatatttaatttcatcagcattataa
aatattgagaagcttttagctatattcttatgtattttcatttgtgaact
tgttgtctaaattcattattatagtctcataaatagccttatttaaagcg
tttatggatatggcagtatatatatacttatacacacacacacaaacaca
cacttccgttaccaaaatatttgtatttcattttaattttatttaatttt
aatgaggacttttccttcatgtcaacatttatagtgctctgtattaaagg
taatcttctcttttgtagagtatgggctttgaagcaagttttatactatt
aggtttaagagaaaagatttaccaggatttgaatctacttctacaacctg
tcatttgaattactttaaagaagttacttgcgttcttgagttgactctta
aaaattaataattaagtataattttatgtcggaaaacaatatgaagttcc
ttaaattagttgtcacaaacaagtctcgacctctgacttaattgttgcac
tcttaatcacctttcaaacttacttattagaaaaaaaatgtacaaatggt
gactaaagagagtttaaataacaaattcatcagttgtttgtatatgaaaa
acagtaagtttaggttcaaaaccatttttattgaaagaattggatggcac
tgtgacattgtttaatgtcacattgccaaatgtactatagaaaacaatag
tgccttcagcaaaatcttgctagtgtatgcaatggtgtcagcgtttatag
gctgattataagaaggatataattatacataataatgattataagagtat
ggcagtctctagatggtccatcctttcgtctcagctccaaactttgtctc
tgtaactccttccatgggtgttttgttcccagttctaagaaggtgcaaag
tgtcacactttggtcttcgtcttcttgagtttcattgttttgaaaattgt
atcttatctggggtattctaagtttctggggctaaatccactatcaggag
taattatggagtcttttgtgggttgttctttgtgag
gaattctggttgagtgaagagaacaagggtctatggaggctgagcatttt
atgggcaatctacttcataccctaccacaagggttcttgtggacagaaag
tttgactacaatagccaaaggcagtggatggctacatctagtgttttaca
aacaataataaaagcaaggccattgtatgcatgagatcacgatggttgtt
ttaacatgttcaagacctttttaagcttatgatagaaaatcctagcatag
catgaagataatcatgaagtctcaacactaattcaggaactattgatgac
tgattctgtgagaggagagatcgtttcttttaggatgtaacctttgctaa
ggagaacacattccaatgaattagacttcagtaatttcaatagatttgtt
tttgaaatataaaatgaagacacaaatttcatttcctatatggaagaagt
tgtggggcagaatgaataaaataaaaatagaatgcacacaattctcttag
aattactagaaataaaattttgcaaataaaataaaaagcacacaaaatat
aattcttatctttatattttaaatattttctcataagaaaataaatgtaa
tcatttttacctattctgtttaaacattcaactttagatgcaacaaatta
aagaattaattataattctttttcaaaatgaacaatatatatttctattg
ttgctaaaattttaaactctttaaacatctataatatccatacttaaaca
agaaatatctaaatgctttgacaatttcattcaaaacagttagaatgttt
tgattagaaggtatttcattcacagcaaaagtctttggtagaacctgtta
tgttctcaaataatttgttagctttttacttcaatgtgtgttaaatgccc
cccctaactggactagattaataattatgtaaatacatgtatactttcta
cagcccttttgggtcgcttcaaaataaatggctttgacaaaaaaagaaac
tattaaccttattctgaaaagaatggatttgacaagtagagctcctattt
gatttaaaagcaatccctctcaaggaatcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_56875119_56876265
seq2: B6Ng01-164K23.b_45_1180

seq1  GAATTCCTGATTCCCCTGGTTCTGTAGCCAAATTACAGAGATTTTCATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGATTCCCCTGGTTCTGTAGCCAAATTACAGAGATTTTCATCA  50

seq1  GCATTTAATATTAAATTCAAATTAAATATTTAATTTCATCAGCATTATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTAATATTAAATTCAAATTAAATATTTAATTTCATCAGCATTATAA  100

seq1  AATATTGAGAAGCTTTTAGCTATATTCTTATGTATTTTCATTTGTGAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTGAGAAGCTTTTAGCTATATTCTTATGTATTTTCATTTGTGAACT  150

seq1  TGTTGTCTAAATTCATTATTATAGTCTCATAAATAGCCTTATTTAAAGCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTCTAAATTCATTATTATAGTCTCATAAATAGCCTTATTTAAAGCG  200

seq1  TTTATGGATATGGCAGTATATATATACTTATACACACACACACAAACACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGGATATGGCAGTATATATATACTTATACACACACACACAAACACA  250

seq1  CACTTCCGTTACCAAAATATTTGTATTTCATTTTAATTTTATTTAATTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCCGTTACCAAAATATTTGTATTTCATTTTAATTTTATTTAATTTT  300

seq1  AATGAGGACTTTTCCTTCATGTCAACATTTATAGTGCTCTGTATTAAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGGACTTTTCCTTCATGTCAACATTTATAGTGCTCTGTATTAAAGG  350

seq1  TAATCTTCTCTTTTGTAGAGTATGGGCTTTGAAGCAAGTTTTATACTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTTCTCTTTTGTAGAGTATGGGCTTTGAAGCAAGTTTTATACTATT  400

seq1  AGGTTTAAGAGAAAAGATTTACCAGGATTTGAATCTACTTCTACAACCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTAAGAGAAAAGATTTACCAGGATTTGAATCTACTTCTACAACCTG  450

seq1  TCATTTGAATTACTTTAAAGAAGTTACTTGCGTTCTTGAGTTGACTCTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTGAATTACTTTAAAGAAGTTACTTGCGTTCTTGAGTTGACTCTTA  500

seq1  AAAATTAATAATTAAGTATAATTTTATGTCGGAAAACAATATGAAGTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTAATAATTAAGTATAATTTTATGTCGGAAAACAATATGAAGTTCC  550

seq1  TTAAATTAGTTGTCACAAACAAGTCTCGACCTCTGACTTAATTGTTGCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTAGTTGTCACAAACAAGTCTCGACCTCTGACTTAATTGTTGCAC  600

seq1  TCTTAATCACCTTTCAAACTTACTTATTAGAAAAAAAATGTACAAATGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAATCACCTTTCAAACTTACTTATTAGAAAAAAAATGTACAAATGGT  650

seq1  GACTAAAGAGAGTTTAAATAACAAATTCATCAGTTGTTTGTATATGAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAAAGAGAGTTTAAATAACAAATTCATCAGTTGTTTGTATATGAAAA  700

seq1  ACAGTAAGTTTAGGTTCAAAACCATTTTTATTGAAAGAATTGGATGGCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAAGTTTAGGTTCAAAACCATTTTTATTGAAAGAATTGGATGGCAC  750

seq1  TGTGACATTGTTTAATGTCACATTGCCAAATGTACTATAGAAAACAATAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACATTGTTTAATGTCACATTGCCAAATGTACTATAGAAAACAATAG  800

seq1  TGCCTTCAGCAAAATCTTGCTAGTGTATGCAATGGTGTCAGCGTTTATAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTCAGCAAAATCTTGCTAGTGTATGCAATGGTGTCAGCGTTTATAG  850

seq1  GCTGATTATAAGAAGGATTATAATTATACATAATAATGATTATAAGAGTA  900
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GCTGATTATAAGAAGGA-TATAATTATACATAATAATGATTATAAGAGTA  899

seq1  TGGCAGTCTCTAGATGGTCCATCCTTTCGTCTCAGCTCCAAACTTTGTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGTCTCTAGATGGTCCATCCTTTCGTCTCAGCTCCAAACTTTGTCT  949

seq1  CTGTAACTCCTTCCATGGGTGTTTTGTTCCCAGTTCTAAGAAGGTGCAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAACTCCTTCCATGGGTGTTTTGTTCCCAGTTCTAAGAAGGTGCAAA  999

seq1  GTGTCCACACTTTGGTCTTCGTTCTTCTTGAGTTTCATTTGTTTTGAAAA  1050
      |||| |||||||||||||||| ||||||||||||||| ||||||||||||
seq2  GTGT-CACACTTTGGTCTTCG-TCTTCTTGAGTTTCA-TTGTTTTGAAAA  1046

seq1  TTGTATCTGTATCTTGGGTATTCTAAGTTTCT-GGGCTAATATCCACTTA  1099
      |||||||| ||||| ||||||||||||||||| ||||||| |||||| ||
seq2  TTGTATCT-TATCTGGGGTATTCTAAGTTTCTGGGGCTAA-ATCCAC-TA  1093

seq1  TCAGTGAGTACATATAATGTGAGTTCTTTTGT-GGTTGTCTCTTGTGAG  1147
      |||| |||||   || ||| ||| |||||||| ||||||   |||||||
seq2  TCAG-GAGTA---ATTATG-GAG-TCTTTTGTGGGTTGTTCTTTGTGAG  1136

seq1: chr5_56948377_56949451
seq2: B6Ng01-164K23.g_67_1146 (reverse)

seq1  GGATTC--TGAGA-GGAATGCTTTTAAATC-AATAGGAGCTCTACTTGTC  46
      ||||||  ||||| ||| |||||||||||| |||||||||||||||||||
seq2  GGATTCCTTGAGAGGGATTGCTTTTAAATCAAATAGGAGCTCTACTTGTC  50

seq1  AAATCCATCTTTATCAGAATAAGGTTAATAGTTTCTTTTTTTGTCAAAGC  96
      ||||||||  || |||||||||||||||||||||||||||||||||||||
seq2  AAATCCATTCTTTTCAGAATAAGGTTAATAGTTTCTTTTTTTGTCAAAGC  100

seq1  CATTTATTTTGAAGCGA-CCAAAAGGGCTGTAGAAAGTATACATGTATTT  145
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CATTTATTTTGAAGCGACCCAAAAGGGCTGTAGAAAGTATACATGTATTT  150

seq1  ACATAATTATTAATCTAGTCCAGTTAGGGGGGGCATTTAACACACATTGA  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAATTATTAATCTAGTCCAGTTAGGGGGGGCATTTAACACACATTGA  200

seq1  AGTAAAAAGCTAACAAATTATTTGAGAACATAACAGGTTCTACCAAAGAC  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAAAGCTAACAAATTATTTGAGAACATAACAGGTTCTACCAAAGAC  250

seq1  TTTTGCTGTGAATGAAATACCTTCTAATCAAAACATTCTAACTGTTTTGA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTGTGAATGAAATACCTTCTAATCAAAACATTCTAACTGTTTTGA  300

seq1  ATGAAATTGTCAAAGCATTTAGATATTTCTTGTTTAAGTATGGATATTAT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATTGTCAAAGCATTTAGATATTTCTTGTTTAAGTATGGATATTAT  350

seq1  AGATGTTTAAAGAGTTTAAAATTTTAGCAACAATAGAAATATATATTGTT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTTTAAAGAGTTTAAAATTTTAGCAACAATAGAAATATATATTGTT  400

seq1  CATTTTGAAAAAGAATTATAATTAATTCTTTAATTTGTTGCATCTAAAGT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGAAAAAGAATTATAATTAATTCTTTAATTTGTTGCATCTAAAGT  450

seq1  TGAATGTTTAAACAGAATAGGTAAAAATGATTACATTTATTTTCTTATGA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGTTTAAACAGAATAGGTAAAAATGATTACATTTATTTTCTTATGA  500

seq1  GAAAATATTTAAAATATAAAGATAAGAATTATATTTTGTGTGCTTTTTAT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATATTTAAAATATAAAGATAAGAATTATATTTTGTGTGCTTTTTAT  550

seq1  TTTATTTGCAAAATTTTATTTCTAGTAATTCTAAGAGAATTGTGTGCATT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTGCAAAATTTTATTTCTAGTAATTCTAAGAGAATTGTGTGCATT  600

seq1  CTATTTTTATTTTATTCATTCTGCCCCACAACTTCTTCCATATAGGAAAT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTTATTTTATTCATTCTGCCCCACAACTTCTTCCATATAGGAAAT  650

seq1  GAAATTTGTGTCTTCATTTTATATTTCAAAAACAAATCTATTGAAATTAC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTGTGTCTTCATTTTATATTTCAAAAACAAATCTATTGAAATTAC  700

seq1  TGAAGTCTAATTCATTGGAATGTGTTCTCCTTAGCAAAGGTTACATCCTA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTCTAATTCATTGGAATGTGTTCTCCTTAGCAAAGGTTACATCCTA  750

seq1  AAAGAAACGATCTCTCCTCTCACAGAATCAGTCATCAATAGTTCCTGAAT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAACGATCTCTCCTCTCACAGAATCAGTCATCAATAGTTCCTGAAT  800

seq1  TAGTGTTGAGACTTCATGATTATCTTCATGCTATGCTAGGATTTTCTATC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTTGAGACTTCATGATTATCTTCATGCTATGCTAGGATTTTCTATC  850

seq1  ATAAGCTTAAAAAGGTCTTGAACATGTTAAAACAACCATCGTGATCTCAT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCTTAAAAAGGTCTTGAACATGTTAAAACAACCATCGTGATCTCAT  900

seq1  GCATACAATGGCCTTGCTTTTATTATTGTTTGTAAAACACTAGATGTAGC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATACAATGGCCTTGCTTTTATTATTGTTTGTAAAACACTAGATGTAGC  950

seq1  CATCCACTGCCTTTGGCTATTGTAGTCAAACTTTCTGTCCACAAGAACCC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCACTGCCTTTGGCTATTGTAGTCAAACTTTCTGTCCACAAGAACCC  1000

seq1  TTGTGGTAGGGTATGAAGTAGATTGCCCATAAAATGCTCAGCCTCCATAG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGTAGGGTATGAAGTAGATTGCCCATAAAATGCTCAGCCTCCATAG  1050

seq1  ACCCTTGTTCTCTTCACTCAACCAGAATTC  1075
      ||||||||||||||||||||||||||||||
seq2  ACCCTTGTTCTCTTCACTCAACCAGAATTC  1080