BAC Information

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BAC

Clone NameB6Ng01-164P16
Chromosome5 (Build37)
Map Location 93,333,464 - 93,508,991
singlet/doubletdoublet
Overlap geneShroom3, LOC623798, Ankrd56
Upstream geneRchy1, Thap6, Gm1045, Cdkl2, LOC100040574, G3bp2, Vdp, LOC100040605, U90926, Ppef2, Asahl, Sdad1, Cxcl9, Cxcl10, Cxcl11, LOC100040228, Art3, Nup54, Scarb2, Gm1381, D5Ertd593e, 4932413O14Rik
Downstream geneSept11, Ccni, LOC100040826, 2010109A12Rik, Ccng2, LOC632115, EG330129, LOC100040885, LOC666064, LOC100040909, C87414, LOC666075, LOC666077, LOC666081, EG665802, LOC100040408, LOC100040981, EG622719, LOC100041003, BC061212, EG622744
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-164P16.bB6Ng01-164P16.g
ACCDH957161DH957162
length5411,182
definitionDH957161|Mus musculus domesticus DNA, BAC clone: B6Ng01-164P16, 5' end.DH957162|Mus musculus domesticus DNA, BAC clone: B6Ng01-164P16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,508,445 - 93,508,991)(93,333,464 - 93,334,639)
sequence
cagggctgcgctgagagaacctatctcaggaaaaaaaaaaaaaaaaaaaa
aaaaaaaaagtactggagccatacactagaaagtagagaagagtgttggc
ctctatgtgatattgtcagcctccccatcagcatctcccctacctttaat
acctgagtacacttccctgtcactcaaagcagggctaggcctcagtcaga
ggccaaggtccaggagtgaactcttcccctttcacgttgttgtcgaggtc
tcctcattttgaagtatattccagcttagctgacccttgagcttcagggt
gattttcttgtttctgctctctcttagggagctctggggttacagatgtg
cctgctgcatccagcttttgctgagagttctgtggattaagatcaggtca
tcaggactgcactgcatatgctttgatccagtgaaccacctccccaaccc
aattttcttcttataatcgtgtgaatgtgtgccagtggctgagtagctgg
gggtagatgatagatagatagatagatagatagatagatag
gaattctccatcctcctgtctcatcccgtccagagctggaactacagttg
cgttccaccattcccggctctgagtgcgctgatactgtcctcacaccttg
gcagaggagctccaagtaaattccagtaagccagtccctcagcatgaact
gaaaccacagggctttgacctagaccctggggcagctgtggagggatccc
tacagcacaggctaaaacagtttccatcctccaggagaatggaagccaag
gcatgtgtctctcggcattgctctgtaggaggaaaaggttcagtaacttt
gtaaatccagtaaaacgaaatcctagtagtagcatggaacctgactatga
agacccagcagccagatgcagatacaagtactgcagtcagggcggaactg
tggaggaaggctgcttactggcttgctctcagcggctcgctctcggcttg
ccttgttatacatcccggccgggatcacctgcccagcggtggtgcctccc
acagtaggcgcctcccacatccatcatttatcaacaatatgcccacagac
atgcccacagtccaacctgatggaatctgatggaggcaatttcccagtcg
agggtccctcttcccaggagatgccagcttgagttaagctgacaaaagcc
aatcagcacaggacactgttactatctcccgcaccccagccttcatctcg
aatgttaagctgggtacttggaattacaactgtttctccttcgtaaggta
gagttccctagacacctggaatctcagggctgcttcagctacctaagggg
catctatctgcccgacaccagcagcatgtacagggagcgggcagctctga
ccacagacaggagcttcctggtgaagggagggccctttgcaagtgtggtt
ccgtggctctgtattggtggaaacgtcaccgtgtaccttctccggggttc
caaactgactgtattatctcagtagtcgataggcatttttacgacactac
acactggataggggaaaaaattgtaaggagggccctcatgatttagccac
ccttcagctgccctgcgcccttgaaggaccttttgggctgactatggcaa
gccctgacctaatgccttcattctccacagtagtcttgggcgttggggaa
tccgaggatacttgaagttcccctctcagcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_93508445_93508991
seq2: B6Ng01-164P16.b_47_593 (reverse)

seq1  CTATCTATCTATCTATCTATCTATCTATCTATCATCTACCCCCAGCTACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTATCTATCTATCTATCTATCTATCTATCATCTACCCCCAGCTACT  50

seq1  CAGCCACTGGCACACATTCACACGATTATAAGAAGAAAATTGGGTTGGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCACTGGCACACATTCACACGATTATAAGAAGAAAATTGGGTTGGGG  100

seq1  AGGTGGTTCACTGGATCAAAGCATATGCAGTGCAGTCCTGATGACCTGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGTTCACTGGATCAAAGCATATGCAGTGCAGTCCTGATGACCTGAT  150

seq1  CTTAATCCACAGAACTCTCAGCAAAAGCTGGATGCAGCAGGCACATCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATCCACAGAACTCTCAGCAAAAGCTGGATGCAGCAGGCACATCTGT  200

seq1  AACCCCAGAGCTCCCTAAGAGAGAGCAGAAACAAGAAAATCACCCTGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCAGAGCTCCCTAAGAGAGAGCAGAAACAAGAAAATCACCCTGAAG  250

seq1  CTCAAGGGTCAGCTAAGCTGGAATATACTTCAAAATGAGGAGACCTCGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGGGTCAGCTAAGCTGGAATATACTTCAAAATGAGGAGACCTCGAC  300

seq1  AACAACGTGAAAGGGGAAGAGTTCACTCCTGGACCTTGGCCTCTGACTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACGTGAAAGGGGAAGAGTTCACTCCTGGACCTTGGCCTCTGACTGA  350

seq1  GGCCTAGCCCTGCTTTGAGTGACAGGGAAGTGTACTCAGGTATTAAAGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTAGCCCTGCTTTGAGTGACAGGGAAGTGTACTCAGGTATTAAAGGT  400

seq1  AGGGGAGATGCTGATGGGGAGGCTGACAATATCACATAGAGGCCAACACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAGATGCTGATGGGGAGGCTGACAATATCACATAGAGGCCAACACT  450

seq1  CTTCTCTACTTTCTAGTGTATGGCTCCAGTACTTTTTTTTTTTTTTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTACTTTCTAGTGTATGGCTCCAGTACTTTTTTTTTTTTTTTTTT  500

seq1  TTTTTTTTTTTCCTGAGATAGGTTCTCTCAGCGCAGCCCTGGAATTC  547
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTCCTGAGATAGGTTCTCTCAGCGCAGCCCTGGAATTC  547

seq1: chr5_93333464_93334639
seq2: B6Ng01-164P16.g_69_1250

seq1  GAATTCTCCATCCTCCTGTCTCATCCCGTCCAGAGCTGGAACTACAGTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCATCCTCCTGTCTCATCCCGTCCAGAGCTGGAACTACAGTTG  50

seq1  CGTTCCACCATTCCCGGCTCTGAGTGCGCTGATACTGTCCTCACACCTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCCACCATTCCCGGCTCTGAGTGCGCTGATACTGTCCTCACACCTTG  100

seq1  GCAGAGGAGCTCCAAGTAAATTCCAGTAAGCCAGTCCCTCAGCATGAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGAGCTCCAAGTAAATTCCAGTAAGCCAGTCCCTCAGCATGAACT  150

seq1  GAAACCACAGGGCTTTGACCTAGACCCTGGGGCAGCTGTGGAGGGATCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCACAGGGCTTTGACCTAGACCCTGGGGCAGCTGTGGAGGGATCCC  200

seq1  TACAGCACAGGCTAAAACAGTTTCCATCCTCCAGGAGAATGGAAGCCAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCACAGGCTAAAACAGTTTCCATCCTCCAGGAGAATGGAAGCCAAG  250

seq1  GCATGTGTCTCTCGGCATTGCTCTGTAGGAGGAAAAGGTTCAGTAACTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTGTCTCTCGGCATTGCTCTGTAGGAGGAAAAGGTTCAGTAACTTT  300

seq1  GTAAATCCAGTAAAACGAAATCCTAGTAGTAGCATGGAACCTGACTATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATCCAGTAAAACGAAATCCTAGTAGTAGCATGGAACCTGACTATGA  350

seq1  AGACCCAGCAGCCAGATGCAGATACAAGTACTGCAGTCAGGGCGGAACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCAGCAGCCAGATGCAGATACAAGTACTGCAGTCAGGGCGGAACTG  400

seq1  TGGAGGAAGGCTGCTTACTGGCTTGCTCTCAGCGGCTCGCTCTCGGCTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGAAGGCTGCTTACTGGCTTGCTCTCAGCGGCTCGCTCTCGGCTTG  450

seq1  CCTTGTTATACATCCCGGCCGGGATCACCTGCCCAGCGGTGGTGCCTCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTTATACATCCCGGCCGGGATCACCTGCCCAGCGGTGGTGCCTCCC  500

seq1  ACAGTAGGCGCCTCCCACATCCATCATTTATCAACAATATGCCCACAGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAGGCGCCTCCCACATCCATCATTTATCAACAATATGCCCACAGAC  550

seq1  ATGCCCACAGTCCAACCTGATGGAATCTGATGGAGGCAATTTCCCAGTCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCACAGTCCAACCTGATGGAATCTGATGGAGGCAATTTCCCAGTCG  600

seq1  AGGGTCCCTCTTCCCAGGAGATGCCAGCTTGAGTTAAGCTGACAAAAGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCCCTCTTCCCAGGAGATGCCAGCTTGAGTTAAGCTGACAAAAGCC  650

seq1  AATCAGCACAGGACACTGTTACTATCTCCCGCACCCCAGCCTTCATCTCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGCACAGGACACTGTTACTATCTCCCGCACCCCAGCCTTCATCTCG  700

seq1  AATGTTAAGCTGGGTACTTGGAATTACAACTGTTTCTCCTTCGTAAGGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTAAGCTGGGTACTTGGAATTACAACTGTTTCTCCTTCGTAAGGTA  750

seq1  GAGTTCCCTAGACACCTGGAATCTCAGGGCTGCTTCAGCTACCTAAGGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCCCTAGACACCTGGAATCTCAGGGCTGCTTCAGCTACCTAAGGGG  800

seq1  CATCTATCTGCCCGACACCAGCAGCATGTACAGGGAGCGGGCAGCTCTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTATCTGCCCGACACCAGCAGCATGTACAGGGAGCGGGCAGCTCTGA  850

seq1  CCACAGACAGGAGCTTCCTGGTGAAGGGAGGGCCCTTTGCAAAGTGTGG-  899
      |||||||||||||||||||||||||||||||||||||||| |||||||| 
seq2  CCACAGACAGGAGCTTCCTGGTGAAGGGAGGGCCCTTTGC-AAGTGTGGT  899

seq1  TCCGTGGCTCTGTATTGGTGGAAACGTCACCGTGTACCTTCTCCGGGGTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTGGCTCTGTATTGGTGGAAACGTCACCGTGTACCTTCTCCGGGGTT  949

seq1  CCAAACTGACTGTATTATCTCAGTAGTCGATAGGCA-TTTTAGGACACTA  998
      |||||||||||||||||||||||||||||||||||| ||||| |||||||
seq2  CCAAACTGACTGTATTATCTCAGTAGTCGATAGGCATTTTTACGACACTA  999

seq1  CACACTGAATAGGGGAAAAAAATGTTAAAGAGGGCCCTACAAGA-TTAG-  1046
      ||||||| ||||||||||||| || ||| ||||||||| || || |||| 
seq2  CACACTGGATAGGGGAAAAAATTG-TAAGGAGGGCCCT-CATGATTTAGC  1047

seq1  CACCCTCAGGCTGCCCTGCCGCCCTTGA--GGCCTTTGGGGCTTGACTGT  1094
      ||||||   ||||||||| |||||||||  | ||||| |||| ||||| |
seq2  CACCCTTCAGCTGCCCTG-CGCCCTTGAAGGACCTTTTGGGC-TGACTAT  1095

seq1  GGGCAGGCCCTGA-CTAA-GCC-TCAGTCTCACAACAGTAGGCTTGGCTG  1141
       |||| ||||||| |||| ||| ||| |||  | ||||||| |||||  |
seq2  -GGCAAGCCCTGACCTAATGCCTTCATTCT--CCACAGTAGTCTTGGGCG  1142

seq1  TTGGGAGACCGCAAGA---CTGAAGT--CCCTCTCAGCCT  1176
      |||||  | |  | ||    ||||||  ||||||||||||
seq2  TTGGGGAATCCGAGGATACTTGAAGTTCCCCTCTCAGCCT  1182