BAC Information

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BAC

Clone NameB6Ng01-165D19
Chromosome5 (Build37)
Map Location 27,132,115 - 27,315,274
singlet/doubletdoublet
Overlap geneDpp6
Upstream geneLOC100038949, EG272714, EG545739, Speer4a, EG664804, LOC619645, LOC100039045, 5031410I06Rik, LOC434689, LOC664837, 4930584F24Rik
Downstream geneB930011P16Rik, Speer4b, Paxip1, Htr5a, EG433862
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-165D19.bB6Ng01-165D19.g
ACCDH957351DH957352
length1,083993
definitionDH957351|Mus musculus domesticus DNA, BAC clone: B6Ng01-165D19, 5' end.DH957352|Mus musculus domesticus DNA, BAC clone: B6Ng01-165D19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,132,115 - 27,133,196)(27,314,276 - 27,315,274)
sequence
gaattccacactctgtctagacaatggctattttctcttggagttattct
attaggtcatagtgcagaattcaatgagattcttgggtaacaaatgcgtg
cttggtgtgagggatctgtaggacactcactctccatggagtgcccatgg
tataatcaggccatgttcaatggacatgtctgcattctaatgatcttaga
catagtaagaatacagggtaagaaaactgtcattgctctgagggcatttg
tctcactcctgattccagattgataagaaagtatgatctggattaaactc
catctgctttactttcagttctagagatgaaggtgagaaggttagcattc
tagtccagcaaagcacactcctggttatctctcctgtctctggcctaggt
gtgagtctgccttacaagtggattaatgacaagagtatcctgattgagag
gataagataatcaatagacatgcaacatgtaacataccacatgcaacttt
atttttagggttctgtagcctgcactgtcttatggggaaaaatagaatat
caaagtagagaaatgaataaatgttaaatattaccatcagaagggttaga
gagatggctcagtaggaaagagcactggctgttcttgcagaggacccaag
ttcagttctcagcacctacatggcagctcacaataatccatagctccgaa
cccaggggatttgacgtttatttctagcctctgttgggcaccaggcatgg
atctgatacacagaactatacacaaccagaacacaaatgcacataaaata
aatacatctttgaaatatataggaacatggaattgccacagaaagggttg
gttgacaatcacaatgtcagcgcacaatggcattactccttattcagtga
agtgatcacacttgtaagtgtctgcttcatgtctctttcttttctcagaa
gtggacagtcaacatttaacagcttttcattcttagctctatttgtttta
aactattaaaaatatgcaattttagccatgaaagataataatgaattttc
caggaataaagcaaatagcaccaagggccctgc
gaattctaaatcttcagacagcatcagaagatagtcagggttcctcacgg
taaacagaactcctacacagggatcacacattacctgaggggtgttgtac
actgctgagggcaaatccagagccccagaatcttcacaggatggggaagg
gaatttaagggaactatttgtaaccagaataattgcaatctttgacaaga
agtaaaccaattcaatagggttgtcaatttacttttgacttatttgaatt
aagaaaaaaattcacttttcaattaatcagaattctcatcaaacaagaaa
tttaggagaaagtttttaatagaaagaaacagaataccaggaaaaaagta
agtttgaatctctgattagagcaaggcctcctggctagcatttgagaatc
atcacagtcatcgccatatctcgctaatcttgtatttccctcaacaatcc
agattattggtcacatggatgttctttcttgacacctcttgccaggacat
ggaagttacctcacacatgtatttcatggagctaaaattattataaaatt
tttgcaccatgttgcaatgacataaacttggagttagtggcccaggttga
attagagctcacatcattccctcatcttctttaaaaactacattaggatt
tccatgttaccctatgatgatggatgtcattaaggaaaaaaaaaaagctg
gctgtcgagtgtgtaaaggacttatacatgatcgacagaagtgcaaatta
gagcaactgacatggactcaggatggagatgcctcaaaatcttcaactac
aggtctcttggatccagatgtggccgcttggatatgcacacacccaaagg
gaatgaataggtagccttactgtgaagagacgtgcatacctgagtttctt
gcagatcctttcacactgcaaggcgtgaaatgatcagggagcccatcaaa
gatattagataaagaactgtgttgcatggaagtgatgcatcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_27132115_27133196
seq2: B6Ng01-165D19.b_44_1126

seq1  GAATTCCACACTCTGTCTAGACAATGGCTATTTTCTCTTGGAGTTATTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACACTCTGTCTAGACAATGGCTATTTTCTCTTGGAGTTATTCT  50

seq1  ATTAGGTCATAGTGCAGAATTCAATGAGATTCTTGGGTAACAAATGCGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGTCATAGTGCAGAATTCAATGAGATTCTTGGGTAACAAATGCGTG  100

seq1  CTTGGTGTGAGGGATCTGTAGGACACTCAGTCTCCATGGAGTGCCCATGG  150
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CTTGGTGTGAGGGATCTGTAGGACACTCACTCTCCATGGAGTGCCCATGG  150

seq1  TATAGTCAGGCCATGTTCAATGGACATGTCTGCATTCTAATGATCTTAGA  200
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATCAGGCCATGTTCAATGGACATGTCTGCATTCTAATGATCTTAGA  200

seq1  CATAGTAAGAATACAGGGTAAGAAAACTGTCATTGCTCTGAGTGCATTTG  250
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CATAGTAAGAATACAGGGTAAGAAAACTGTCATTGCTCTGAGGGCATTTG  250

seq1  TCTCAGTCCTGATTCCAGATTGATAAGAAAGTATGATCTGGATTAAACTC  300
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACTCCTGATTCCAGATTGATAAGAAAGTATGATCTGGATTAAACTC  300

seq1  CATCTGCTTTACTTTCAGTTCTAGAGATGAAGGTGAGAAGGTTAGCATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGCTTTACTTTCAGTTCTAGAGATGAAGGTGAGAAGGTTAGCATTC  350

seq1  TAGTCCAGCAAAGCACACTCCTGGTTATCTCTCCTGTCTCTGGCCTAGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCCAGCAAAGCACACTCCTGGTTATCTCTCCTGTCTCTGGCCTAGGT  400

seq1  GTGAGTCTGCCTTACAAGTGGATTAATGACAAGAGTATCCTGATTGAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTCTGCCTTACAAGTGGATTAATGACAAGAGTATCCTGATTGAGAG  450

seq1  GATAAGATAATCAATAGACATGCAACATGTAACATACCACATGCAACTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGATAATCAATAGACATGCAACATGTAACATACCACATGCAACTTT  500

seq1  ATTTTTAGGGTTCTGTAGCCTGCACTGTCTTATGGGGAAAAATAGAATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAGGGTTCTGTAGCCTGCACTGTCTTATGGGGAAAAATAGAATAT  550

seq1  CAAAGTAGAGAAATGAATAAATGTTAAATATTACCATCAGAGGGGTTAGA  600
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CAAAGTAGAGAAATGAATAAATGTTAAATATTACCATCAGAAGGGTTAGA  600

seq1  GAGATGGCTCAGTAGGAAAGAGCACTGGCTGTTCTTGCAGAGGACCCAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGGCTCAGTAGGAAAGAGCACTGGCTGTTCTTGCAGAGGACCCAAG  650

seq1  TTCAGTTCTCAGCACCTACATGGCAGCTCACAATAATCCATAGCTCCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TTCAGTTCTCAGCACCTACATGGCAGCTCACAATAATCCATAGCTCCGAA  700

seq1  CCCAGGGGATTTGACGTTTATTTCTAGCCTCTGTTGGGCACCAGGCATGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGGGATTTGACGTTTATTTCTAGCCTCTGTTGGGCACCAGGCATGG  750

seq1  ATCTGATACACAGAACTATACACAACCAGAACACAAATGCACATAAAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGATACACAGAACTATACACAACCAGAACACAAATGCACATAAAATA  800

seq1  AATACATCTTTAAAAATATATAGGAACATGGAATTGCCACAGAAAGGGTT  850
      |||||||||||  |||||||||||||||||||||||||||||||||||||
seq2  AATACATCTTT-GAAATATATAGGAACATGGAATTGCCACAGAAAGGGTT  849

seq1  GGTTGACAATCACAATGTCAGCGCAGCAGTGGCATTACTCCTTATTCAGT  900
      ||||||||||||||||||||||||| || |||||||||||||||||||||
seq2  GGTTGACAATCACAATGTCAGCGCA-CAATGGCATTACTCCTTATTCAGT  898

seq1  GAAGTTATCACACTTGTAAGTGTTCTGCTTCAGTGTCTC-TTCCTTTCTC  949
      ||||| |||||||||||||||| ||||||||| |||||| ||| ||||||
seq2  GAAGTGATCACACTTGTAAGTG-TCTGCTTCA-TGTCTCTTTCTTTTCTC  946

seq1  AGAAGTGGACAGTCAGCATTTAACAGGCTTTACATTCTTAGCTCTATTTT  999
      ||||||||||||||| ||||||||| ||||| ||||||||||||||||| 
seq2  AGAAGTGGACAGTCAACATTTAACA-GCTTTTCATTCTTAGCTCTATTTG  995

seq1  TTTAAAACTAT--AAAATATGCAATTTTTAAGCATGAGAGA-AATAAATA  1046
      ||| |||||||  ||||||||||| |||||  ||||| ||| |||||  |
seq2  TTTTAAACTATTAAAAATATGCAA-TTTTAGCCATGAAAGATAATAATGA  1044

seq1  ATTTCACA-GAATAAAGCAAATAGCAC--AAGGCCCTGC  1082
      ||||  || ||||||||||||||||||  | ||||||||
seq2  ATTTTCCAGGAATAAAGCAAATAGCACCAAGGGCCCTGC  1083

seq1: chr5_27314276_27315274
seq2: B6Ng01-165D19.g_69_1061 (reverse)

seq1  AGGATTCCATCACTTCCATGCAACACAGTTTCTTTATCCTATTATCTGTT  50
      |||| | ||||||||||||||||||||| |||||||| ||| ||||| ||
seq2  AGGA-TGCATCACTTCCATGCAACACAG-TTCTTTAT-CTAATATCT-TT  46

seq1  GATGGGCACACTGATCATTTCACGACTTTGCTGTTGTGAATAGGATCTCC  100
      ||||||| | |||||||||||||| | |||| | |||||| ||||||| |
seq2  GATGGGCTCCCTGATCATTTCACG-CCTTGCAG-TGTGAA-AGGATCTGC  93

seq1  AAG-AACTCAGGTATGCAGGTCTCTTCACAGTAA-GCTACC-ATTCATT-  146
      ||| |||||||||||||| ||||||||||||||| |||||| ||||||| 
seq2  AAGAAACTCAGGTATGCACGTCTCTTCACAGTAAGGCTACCTATTCATTC  143

seq1  CCTTTGGGTGTGTGCATATCCAAGCGGCCACATCTGGATCCAAGAGACCT  196
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CCTTTGGGTGTGTGCATATCCAAGCGGCCACATCTGGATCCAAGAGACC-  192

seq1  TCTAGTTGAAGATTTTTGAGGCATCTCCATCCTGAGTTCCATGTCAGTTG  246
      | |||||||||| ||||||||||||||||||||||| |||||||||||||
seq2  TGTAGTTGAAGA-TTTTGAGGCATCTCCATCCTGAG-TCCATGTCAGTTG  240

seq1  CTCTAATTTGCACTTCTGTCGATCATGTATAAGTCCTTTACACACTCGAC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAATTTGCACTTCTGTCGATCATGTATAAGTCCTTTACACACTCGAC  290

seq1  AGCCAGGTTTTTTTTTTTCCTTAATGACATCCATCATCATAGGGTAACAT  346
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGCTTTTTTTTTTTCCTTAATGACATCCATCATCATAGGGTAACAT  340

seq1  GGAAATCCTAATGTAGTTTTTAAAGAAGATGAGGGAATGATGTGAGCTCT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATCCTAATGTAGTTTTTAAAGAAGATGAGGGAATGATGTGAGCTCT  390

seq1  AATTCAACCTGGGCCACTAACTCCAAGTTTATGTCATTGCAACATGGTGC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAACCTGGGCCACTAACTCCAAGTTTATGTCATTGCAACATGGTGC  440

seq1  AAAAATTTTATAATAATTTTAGCTCCATGAAATACATGTCTGAGGTAACT  496
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AAAAATTTTATAATAATTTTAGCTCCATGAAATACATGTGTGAGGTAACT  490

seq1  TCCATGTCCTGGCAAGAGGTGTCAAGAAAGAACATCCATGTGACCAATAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGTCCTGGCAAGAGGTGTCAAGAAAGAACATCCATGTGACCAATAA  540

seq1  TCTGGATTGTTGAGGGAAATACAAGATTAGCGAGATATGGCGATGACTGT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGATTGTTGAGGGAAATACAAGATTAGCGAGATATGGCGATGACTGT  590

seq1  GATGATTCTCAAATGCTAGCCAGGAGGCCTTGCTCTAATCAGAGATTCAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATTCTCAAATGCTAGCCAGGAGGCCTTGCTCTAATCAGAGATTCAA  640

seq1  ACTTACTTTTTTCCTGGTATTCTGTTTCTTTCTATTAAAAACTTTCTCCT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACTTTTTTCCTGGTATTCTGTTTCTTTCTATTAAAAACTTTCTCCT  690

seq1  AAATTTCTTGTTTGATGAGAATTCTGATTAATTGAAAAGTGAATTTTTTT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCTTGTTTGATGAGAATTCTGATTAATTGAAAAGTGAATTTTTTT  740

seq1  CTTAATTCAAATAAGTCAAAAGTAAATTGACAACCCTATTGAATTGGTTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATTCAAATAAGTCAAAAGTAAATTGACAACCCTATTGAATTGGTTT  790

seq1  ACTTCTTGTCAAAGATTGCAATTATTCTGGTTACAAATAGTTCCCTTAAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTTGTCAAAGATTGCAATTATTCTGGTTACAAATAGTTCCCTTAAA  840

seq1  TTCCCTTCCCCATCCTGTGAAGATTCTGGGGCTCTGGATTTGCCCTCAGC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTTCCCCATCCTGTGAAGATTCTGGGGCTCTGGATTTGCCCTCAGC  890

seq1  AGTGTACAACACCCCTCAGGTAATGTGTGATCCCTGTGTAGGAGTTCTGT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTACAACACCCCTCAGGTAATGTGTGATCCCTGTGTAGGAGTTCTGT  940

seq1  TTACCGTGAGGAACCCTGACTATCTTCTGATGCTGTCTGAAGATTTAGAA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCGTGAGGAACCCTGACTATCTTCTGATGCTGTCTGAAGATTTAGAA  990

seq1  TTC  999
      |||
seq2  TTC  993