BAC Information

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BAC

Clone NameB6Ng01-165D22
Chromosome5 (Build37)
Map Location 123,829,684 - 123,969,019
singlet/doubletdoublet
Overlap geneMlxip, LOC673222, Il31, Lrrc43, B3gnt4, Diablo
Upstream geneAtpbd1c, Arpc3, Anapc7, Atp2a2, Ift81, P2rx7, P2rx4, Camkk2, Anapc5, Rnf34, Fbxl10, LOC100039895, Tmem142a, Morn3, LOC623672, BC022593, Rhof, 4932422M17Rik, Setd1b, Hpd, Psmd9, Wdr66, LOC100042824, Bcl7a
Downstream geneVps33a, Clip1, Zcchc8, Rsrc2, Kntc1, LOC100040005, Gpr109a, Gpr81, Denr, Ccdc62, Hip1r, Vps37b, Abcb9, Ogfod2, Arl6ip4, Pitpnm2, Mphosph9, 2810006K23Rik, Cdk2ap1, Sbno1, Setd8, BC003324, LOC606492, 6330548G22Rik, 2900002H16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-165D22.bB6Ng01-165D22.g
ACCDH957357DH957358
length1,021887
definitionDH957357|Mus musculus domesticus DNA, BAC clone: B6Ng01-165D22, 5' end.DH957358|Mus musculus domesticus DNA, BAC clone: B6Ng01-165D22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,967,997 - 123,969,019)(123,829,684 - 123,830,569)
sequence
gaattctaggccagcctagttgacatagtggtctctgtggtgtgtgtggg
gtaggggaggctcagaggttaggatgctcttccagaggtcctgagttcaa
ttctcaacacccacatggtggctcacaaccatctgtaatgggagccaatg
ccctcttctgacattcaggctctgtatgcagatagagcactcatatacat
acaataaattagaaaataataatcaaatgttttgggctggaggatggctc
aggagcagtagctgctcttcaattcccacatggcagctcacaccttgctg
taactccagttccaggggatcggacacactcagaaacacttggaggcatg
catataaaacaccattaaaaatatatataattttttttttttttaagaaa
aggccaggaagtagtagtacacacttttaattccagcacttgggaggcag
gcagttctctatgagtttaaggccagcctggtgagtgagttccaggacaa
ccagggctgcacaaagaaatcctgtctcaaaacaaaaaaagcaccctgtg
tgtgttttggagggtggggcagtaatgttggaccctaagctagaatcaca
caggtggttgtgagctgcccagtgtcagctctgcctctaatttcagtgtt
tgaagcaggaaaactgggctgcacactcgtgaaagtcattatgaccatga
tctgcatgacacccaaaggctggtcttgccctctaccctggctgaggagg
aaagggattcccacagctcagtgggcttgctctgttactccagggtggtc
ttgaacttgaaatcctcctgccacagcctcttgaattggagatgactgga
tgtgctaccaccccaggactagttatctgaaggtgtagatgcactagtct
ttccaggagtctctcctgactcacttatcattctgtgtttgtaggctgtt
tacacgttagtgtctcttgtaccgacaattaacagttacttgggaagatg
aattcccagggagaagatgag
gaattcttcctagaatatacctgtaccaaccagtgaccaggacttgagtt
cctttatactctaacttactgtggtcagagttcatgaacccacgtcaact
atttgcattggaaattcaatcatgtatgacctggtgcagttagatttcac
aggccccatctcagtatcctgttaccctcagagaaatttcccaattgata
atgaaaggaacagaggaaaataggcatgaatctgaaaggccaacaggaca
gaaatacttggtgttcttgaacttgagtgtgtgagaaacccaccaggggt
gttacctaggaactgccatactccttcaatgtaagaaataagctttaaat
tttagaaggcacagttacccaataaccctgttgtactggttgccccaggc
aacagcctcgaatgaatggccacgaacagcatctcaccattttctttctt
tctttcttcctttctttctttttctttaagatttattttatgtatatgag
tacactgtacgtgtacaggtggttgtgagctcactctggcccaaagattt
tatttattattatatgtaagtacactgtagctgtcttcagacacaccaga
agaaggcctcagatcccattacagatggttgtgagccaccatgtggttgc
tgggatttgaactcaggacctctgaaagagcagtcagtgttcttaaccgc
tgagccatctctccagccctatcttactattttcagtgggatcttttaaa
atgaaaacttcatcatggtgtccatatttatgaatggtttggagggatta
gggcttccaagattttcaatttgtagtgagacacttttaaataaagtttt
ataggtccttataagaagttaataaaaaacaatattc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_123967997_123969019
seq2: B6Ng01-165D22.b_44_1064 (reverse)

seq1  CTCATCTTCCTCCTGGGAATTCATCTTCCCAAGTAAACTTGTATATTGTC  50
      |||||||||  |||||||||||||||||||||||||   |||  ||||||
seq2  CTCATCTTCTCCCTGGGAATTCATCTTCCCAAGTAA--CTGTTAATTGTC  48

seq1  GGTAC-AGAGACACTAACGTGTAAACAGCCTACAAACACAGAATGATAAG  99
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACAAGAGACACTAACGTGTAAACAGCCTACAAACACAGAATGATAAG  98

seq1  TGAGTCAGGAGAGACTCCCTGAAAGGACTAGTGCATCTACACCTTCAGAT  149
      |||||||||||||||| |||| || |||||||||||||||||||||||||
seq2  TGAGTCAGGAGAGACT-CCTGGAAAGACTAGTGCATCTACACCTTCAGAT  147

seq1  AACTAGTCCTGGGGTGGTAGCACATCCAGTCATCTCCAATTCAAGAGGCT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGTCCTGGGGTGGTAGCACATCCAGTCATCTCCAATTCAAGAGGCT  197

seq1  GTGGCAGGAGGATTTCAAGTTCAAGACCACCCTGGAGTAACAGAGCAAGC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCAGGAGGATTTCAAGTTCAAGACCACCCTGGAGTAACAGAGCAAGC  247

seq1  CCACTGAGCTGTGGGAATCCCTTTCCTCCTCAGCCAGGGTAGAGGGCAAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGAGCTGTGGGAATCCCTTTCCTCCTCAGCCAGGGTAGAGGGCAAG  297

seq1  ACCAGCCTTTGGGTGTCATGCAGATCATGGTCATAATGACTTTCACGAGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCCTTTGGGTGTCATGCAGATCATGGTCATAATGACTTTCACGAGT  347

seq1  GTGCAGCCCAGTTTTCCTGCTTCAAACACTGAAATTAGAGGCAGAGCTGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGCCCAGTTTTCCTGCTTCAAACACTGAAATTAGAGGCAGAGCTGA  397

seq1  CACTGGGCAGCTCACAACCACCTGTGTGATTCTAGCTTAGGGTCCAACAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGGCAGCTCACAACCACCTGTGTGATTCTAGCTTAGGGTCCAACAT  447

seq1  TACTGCCCCACCCTCCAAAACACACACAGGGTGCTTTTTTTGTTTTGAGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCCCCACCCTCCAAAACACACACAGGGTGCTTTTTTTGTTTTGAGA  497

seq1  CAGGATTTCTTTGTGCAGCCCTGGTTGTCCTGGAACTCACTCACCAGGCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATTTCTTTGTGCAGCCCTGGTTGTCCTGGAACTCACTCACCAGGCT  547

seq1  GGCCTTAAACTCATAGAGAACTGCCTGCCTCCCAAGTGCTGGAATTAAAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTAAACTCATAGAGAACTGCCTGCCTCCCAAGTGCTGGAATTAAAA  597

seq1  GTGTGTACTACTACTTCCTGGCCTTTTCTTAAAAAAAAAAAAAATTATAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTACTACTACTTCCTGGCCTTTTCTTAAAAAAAAAAAAAATTATAT  647

seq1  ATATTTTTAATGGTGTTTTATATGCATGCCTCCAAGTGTTTCTGAGTGTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTTAATGGTGTTTTATATGCATGCCTCCAAGTGTTTCTGAGTGTG  697

seq1  TCCGATCCCCTGGAACTGGAGTTACAGCAAGGTGTGAGCTGCCATGTGGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGATCCCCTGGAACTGGAGTTACAGCAAGGTGTGAGCTGCCATGTGGG  747

seq1  AATTGAAGAGCAGCTACTGCTCCTGAGCCATCCTCCAGCCCAAAACATTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAAGAGCAGCTACTGCTCCTGAGCCATCCTCCAGCCCAAAACATTT  797

seq1  GATTATTATTTTCTAATTTATTGTATGTATATGAGTGCTCTATCTGCATA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATTATTTTCTAATTTATTGTATGTATATGAGTGCTCTATCTGCATA  847

seq1  CAGAGCCTGAATGTCAGAAGAGGGCATTGGCTCCCATTACAGATGGTTGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCCTGAATGTCAGAAGAGGGCATTGGCTCCCATTACAGATGGTTGT  897

seq1  GAGCCACCATGTGGGTGTTGAGAATTGAACTCAGGACCTCTGGAAGAGCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCACCATGTGGGTGTTGAGAATTGAACTCAGGACCTCTGGAAGAGCA  947

seq1  TCCTAACCTCTGAGCCTCCCCTACCCCACACACACCACAGAGACCACTAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAACCTCTGAGCCTCCCCTACCCCACACACACCACAGAGACCACTAT  997

seq1  GTCAACTAGGCTGGCCTAGAATTC  1023
      ||||||||||||||||||||||||
seq2  GTCAACTAGGCTGGCCTAGAATTC  1021

seq1: chr5_123829684_123830569
seq2: B6Ng01-165D22.g_69_955

seq1  GAATTCTTCCTAGAATATACCTGTACCAACCAGTGACCAGGACTTGAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCTAGAATATACCTGTACCAACCAGTGACCAGGACTTGAGTT  50

seq1  CCTTTATACTCTAACTTACTGTGGTCAGAGTTCATGAACCCACGTCAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTATACTCTAACTTACTGTGGTCAGAGTTCATGAACCCACGTCAACT  100

seq1  ATTTGCATTGGAAATTCAATCATGTATGACCTGGTGCAGTTAGATTTCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCATTGGAAATTCAATCATGTATGACCTGGTGCAGTTAGATTTCAC  150

seq1  AGGCCCCATCTCAGTATCCTGTTACCCTCAGAGAAATTTCCCAATTGATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCCATCTCAGTATCCTGTTACCCTCAGAGAAATTTCCCAATTGATA  200

seq1  ATGAAAGGAACAGAGGAAAATAGGCATGAATCTGAAAGGCCAACAGGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAGGAACAGAGGAAAATAGGCATGAATCTGAAAGGCCAACAGGACA  250

seq1  GAAATACTTGGTGTTCTTGAACTTGAGTGTGTGAGAAACCCACCAGGGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATACTTGGTGTTCTTGAACTTGAGTGTGTGAGAAACCCACCAGGGGT  300

seq1  GTTACCTAGGAACTGCCATACTCCTTCAATGTAAGAAATAAGCTTTAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACCTAGGAACTGCCATACTCCTTCAATGTAAGAAATAAGCTTTAAAT  350

seq1  TTTAGAAGGCACAGTTACCCAATAACCCTGTTGTACTGGTTGCCCCAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAAGGCACAGTTACCCAATAACCCTGTTGTACTGGTTGCCCCAGGC  400

seq1  AACAGCCTCGAATGAATGGCCACGAACAGCATCTCACCATTTTCTTTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCCTCGAATGAATGGCCACGAACAGCATCTCACCATTTTCTTTCTT  450

seq1  TCTTTCTTCCTTTCTTTCTTTTTCTTTAAGATTTATTTTATGTATATGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTCCTTTCTTTCTTTTTCTTTAAGATTTATTTTATGTATATGAG  500

seq1  TACACTGTACGTGTACAGGTGGTTGTGAGCTCACTCTGGCCCAAAGATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTGTACGTGTACAGGTGGTTGTGAGCTCACTCTGGCCCAAAGATTT  550

seq1  TATTTATTATTATATGTAAGTACACTGTAGCTGTCTTCAGACACACCAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTATTATATGTAAGTACACTGTAGCTGTCTTCAGACACACCAGA  600

seq1  AGAAGGCCTCAGATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGCCTCAGATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGC  650

seq1  TGGGATTTGAACTCAGGACCTCTGAAAGAGCAGTCAGTGTTCTTAACCGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATTTGAACTCAGGACCTCTGAAAGAGCAGTCAGTGTTCTTAACCGC  700

seq1  TGAGCCATCTCTCCAGCCCTATCTTACTATTTTCAGTGGGATCTTTTAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCATCTCTCCAGCCCTATCTTACTATTTTCAGTGGGATCTTTTAAA  750

seq1  ATGAAAACTTCATCATGGTGTCCATATTTATGAATGG-TTGGAGGGATTA  799
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ATGAAAACTTCATCATGGTGTCCATATTTATGAATGGTTTGGAGGGATTA  800

seq1  GGGCTTCCCAAGATTTTCAATTTGTAGTGAAGACACTTTTAAATAAAGTT  849
      |||||| |||||||||||||||||||||| ||||||||||||||||||||
seq2  GGGCTT-CCAAGATTTTCAATTTGTAGTG-AGACACTTTTAAATAAAGTT  848

seq1  TTATA-GTTCTTATAAGAAG-TAAACAAAAACAATATTC  886
      ||||| || ||||||||||| |||  |||||||||||||
seq2  TTATAGGTCCTTATAAGAAGTTAATAAAAAACAATATTC  887