BAC Information

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BAC

Clone NameB6Ng01-165F03
Chromosome5 (Build37)
Map Location 134,301,395 - 134,436,341
singlet/doubletdoublet
Overlap geneLOC666038, LOC100039750
Upstream geneLOC100039731
Downstream geneGats, Wbscr16, Gtf2ird2, Ncf1, Gtf2i, LOC630424, Gtf2ird1, LOC100039820, Clip2, EG666071, Gm52, Rfc2, Lat2, Eif4h, LOC638081, Limk1, Eln, Wbscr28, Cldn13, Wbscr27, Cldn4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-165F03.bB6Ng01-165F03.g
ACCDH957411DH957412
length793772
definitionDH957411|Mus musculus domesticus DNA, BAC clone: B6Ng01-165F03, 5' end.DH957412|Mus musculus domesticus DNA, BAC clone: B6Ng01-165F03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(134,435,684 - 134,436,341)(134,301,395 - 134,302,164)
sequence
gaattcatatatatatgtatatatatgtacatttataaattacgtggata
gattgtaatttgagagagcacagataactaaaagtcccgttaatgctcgc
ttgcacttcctacacttcaacgattgaggctaaggtatccctgctggatg
tcttaactcattaataacaaaacctgtttttttattatctgttttcctca
aatccaaagagcaaagggcacaaatgggcaaaatgaatcaactaagagaa
ataactcagaggttaagaacacaactgctcttccagatcacctaccctac
ctttagtggaatacaggtagaaggatctttttatacattttgtcatctgt
gcctgtgtatgggtacgagcacacatgtgttatggcttgcatgcgggagt
cagggaatgacttgcagaagttggtttctcccctctacatggtgccactg
aggatggaactcagggtgttatactgggcagggagcacatttacttgttg
agtcacatgactaacactggaagggttaaaactctctctctctgtatccc
tccctgccccctctctctgtctgtctgtctgtctgtctgtctgtctgtat
gtctgcctgtctgtctgaatgtgggtatgtgtgggtatcccccctccctg
tccgtccgtcggactgtctgtctggccgactgtctgtctgtctctccgag
tgtgggtatttgtggggtattccccctctctgtctgtccgcctgtaagga
ggcgcatctgtctgaatgtgtatgttcaggtatccccactccc
gaattccctgtacaggcctcaaaaggaaccggagaaggacaaagaggagg
aagaagaagaaggtgggaggaaaaagaggaggaagaacatggaaaggaga
aagaagaggaagagagaggaggtcttgttggggagacttacccttgttga
accctgatgttccttgaccactcttcctatgttgtttggcaagttccagg
acagtgagagactctgactcaaaaacaaaagttggagctggagaaatggc
tgtgactaacaatatgtactgattttttcagaagactcaagttatgttcc
caacacacgcatcaggtggttcacaactgcttataaaatcagctccagag
gatctaaatccccctatggtctcttcagtcacctgcactcacatgtgcac
acatacatgcatgtcactctgacaatatatacacacacacatatgaacat
gcatacacacacacatatatacacacaaaaaaagaaaaagagctttcttc
tgttgaaagcttgctgtttgtagcaagacttagaattacaaaggatttct
ggctaattaactttcagttaatcagataattcaattaaccatagcaccct
gttcccccgagcaattggttaattgaagttttagtggtgggaagcattac
agtgtcagccagtaaatgaatagaccagaaatgggtacaggaatctccat
aaaaagatgagcccccataagctctgtgtgtgtgtgtgtgttgtgtgtgt
tcactatgttaatatagttgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_134435684_134436341
seq2: B6Ng01-165F03.b_177_834 (reverse)

seq1  GGGAGGGGGGATACCCACACATACCACATTCAGACAGACAGGCAGACAGA  50
      ||||| |||||||||   ||||| ||||||||||||||   ||   |  |
seq2  GGGAGTGGGGATACCTGAACATA-CACATTCAGACAGATGCGCCTCCTTA  49

seq1  CAGACAGACAGACAGAGAGGGGGGATA-CCCACACATACCCACACTCAGA  99
      ||| | ||||||||||||||||| ||| |||||| |||||||||||| ||
seq2  CAGGCGGACAGACAGAGAGGGGGAATACCCCACAAATACCCACACTCGGA  99

seq1  GAGACAGACAGACAGACAGACAGACAGACAGACAGACGGACGGACAGGGA  149
      ||||||||||||||| | | ||||||||||| | ||||||||||||||||
seq2  GAGACAGACAGACAGTCGGCCAGACAGACAGTCCGACGGACGGACAGGGA  149

seq1  GGGGGGATACCCACACATACCCACATTCAGACAGACAGGCAGACATACAG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGATACCCACACATACCCACATTCAGACAGACAGGCAGACATACAG  199

seq1  ACAGACAGACAGACAGACAGACAGACAGAGAGAGGGGGCAGGGAGGGATA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACAGACAGACAGACAGACAGACAGAGAGAGGGGGCAGGGAGGGATA  249

seq1  CAGAGAGAGAGAGTTTTAACCCTTCCAGTGCTAGTCATGTGACTCAACAA  299
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CAGAGAGAGAGAGTTTTAACCCTTCCAGTGTTAGTCATGTGACTCAACAA  299

seq1  GTAAATGTGCTCCCTGCCCAGTATAACACCCTGAGTTCCATCCTCAGTGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATGTGCTCCCTGCCCAGTATAACACCCTGAGTTCCATCCTCAGTGG  349

seq1  CACCATGTAGAGGGGAGAAACCAACTTCTGCAAGTCATTCCCTGACTCCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATGTAGAGGGGAGAAACCAACTTCTGCAAGTCATTCCCTGACTCCC  399

seq1  GCATGCAAGCCATAACACATGTGTGCTCGTACCCATACACAGGCACAGAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCAAGCCATAACACATGTGTGCTCGTACCCATACACAGGCACAGAT  449

seq1  GACAAAATGTATAAAAAGATCCTTCTACCTGTATTCCACTAAAGGTAGGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GACAAAATGTATAAAAAGATCCTTCTACCTGTATTCCACTAAAGGTAGGG  499

seq1  TAGGTGATCTGGAAGAGCAGTTGTGTTCTTAACCTCTGAGTTATTTCTCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGATCTGGAAGAGCAGTTGTGTTCTTAACCTCTGAGTTATTTCTCT  549

seq1  TAGTTGATTCATTTTGCCCATTTGTGCCCTTTGCTCTTCTGATTCTTGGA  599
      ||||||||||||||||||||||||||||||||||||||  ||||   |||
seq2  TAGTTGATTCATTTTGCCCATTTGTGCCCTTTGCTCTTTGGATTTGAGGA  599

seq1  AAACAGATAATACTGAAACAGGTTTTGTTATTAATCTGTGATGACATCCA  649
      ||||||||||||   ||||||||||||||||||||  || | ||||||||
seq2  AAACAGATAATAAAAAAACAGGTTTTGTTATTAATGAGTTAAGACATCCA  649

seq1  GCAGGGATA  658
      |||||||||
seq2  GCAGGGATA  658

seq1: chr5_134301395_134302164
seq2: B6Ng01-165F03.g_68_839

seq1  GAATTCCCTGTACTGGCAAGAAAAAGGAGCAGGAGAAGGAGAAGGAGGAG  50
      ||||||||||||| |||    ||||||| | ||||||||| || ||||||
seq2  GAATTCCCTGTACAGGC-CTCAAAAGGAACCGGAGAAGGACAAAGAGGAG  49

seq1  GAAGAAGAAGAAGAGAGGGAGGAAAAAGAGGAGGAAGAACATGAAAAGGA  100
      ||||||||||||| | ||||||||||||||||||||||||||| ||||||
seq2  GAAGAAGAAGAAG-GTGGGAGGAAAAAGAGGAGGAAGAACATGGAAAGGA  98

seq1  AAAAGAAGAGGAAGAGAGAGGAGGTCAGGTTGGGGAGACAGACACAGGTA  150
       |||||||||||||||||||||||||  |||||||||||  || |  || 
seq2  GAAAGAAGAGGAAGAGAGAGGAGGTCTTGTTGGGGAGACTTACCCTTGTT  148

seq1  GAACCCTGAGGTTCCTTGACCAGTCAGCCTAGCTTGTTTGGCAAGTTCCA  200
      ||||||||| |||||||||||| ||  ||||  |||||||||||||||||
seq2  GAACCCTGATGTTCCTTGACCACTCTTCCTATGTTGTTTGGCAAGTTCCA  198

seq1  GGACAGTGAGAGACTCTGACTCAAAAACAAAAGTTGGAGCTGGAGAAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGTGAGAGACTCTGACTCAAAAACAAAAGTTGGAGCTGGAGAAATG  248

seq1  GCTGTGACTAAGAATATGTACTGATTTTTTCAGAAGACTCAAGTTATGTT  300
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGACTAACAATATGTACTGATTTTTTCAGAAGACTCAAGTTATGTT  298

seq1  CCCAACACACGCATCAGGTGGTTCACAACTGCTTATAAAATCAGCTCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACACACGCATCAGGTGGTTCACAACTGCTTATAAAATCAGCTCCAG  348

seq1  AGGATCTAAATCCCCCTATGGTCTCTTCAGTCACCTGCACTCACATGTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCTAAATCCCCCTATGGTCTCTTCAGTCACCTGCACTCACATGTGC  398

seq1  ACACATACATGCATGTCACTCTGACAATATATACACACACACATATGAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATACATGCATGTCACTCTGACAATATATACACACACACATATGAAC  448

seq1  ATGCATACACACACACATATATACACACAAAAAAAGAAAAAGAGCTTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATACACACACACATATATACACACAAAAAAAGAAAAAGAGCTTTCT  498

seq1  TCTGTTGAAAGCTTGCTGTTTGTAGCAAGACTTAGAATTACAAAGGATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTGAAAGCTTGCTGTTTGTAGCAAGACTTAGAATTACAAAGGATTT  548

seq1  CTGGCTAATTAACTTTCAGTTAATCAGATAATTCAATTAACCATAGCACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTAATTAACTTTCAGTTAATCAGATAATTCAATTAACCATAGCACC  598

seq1  CTGTTCCCCCGAGCAATTGGTTAATTGAAGTTTTAGTGGTGGGAAGCATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCCCCCGAGCAATTGGTTAATTGAAGTTTTAGTGGTGGGAAGCATT  648

seq1  ACAGTGTCAGCCAGTAAATGAATAGACCAGAAATGGGTACAGGAATCTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGTCAGCCAGTAAATGAATAGACCAGAAATGGGTACAGGAATCTCC  698

seq1  AT-AAAAGATGAG-CCCCATAAGCTCTGTGTGTGTGTGTGTG-TGTGTGT  747
      || |||||||||| |||||||||||||||||||||||||||| |||||||
seq2  ATAAAAAGATGAGCCCCCATAAGCTCTGTGTGTGTGTGTGTGTTGTGTGT  748

seq1  GTTCACT-TGTGAATATAGATGAA  770
      ||||||| ||| ||||||| ||||
seq2  GTTCACTATGTTAATATAGTTGAA  772