BAC Information

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BAC

Clone NameB6Ng01-165H17
Chromosome5 (Build37)
Map Location 74,089,647 - 74,253,846
singlet/doubletdoublet
Overlap genenone
Upstream geneTxk, Tec, Slain2, Slc10a4, LOC667127, Fryl, Ociad1, Ociad2, LOC667154, LOC100042205, C130090K23Rik, LOC627733, Dcun1d4, BC031901, Sgcb, Spata18
Downstream geneUsp46, 2700023E23Rik, Rasl11b, Scfd2, Fip1l1, Lnx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-165H17.bB6Ng01-165H17.g
ACCDH957528DH957529
length709526
definitionDH957528|Mus musculus domesticus DNA, BAC clone: B6Ng01-165H17, 5' end.DH957529|Mus musculus domesticus DNA, BAC clone: B6Ng01-165H17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,089,647 - 74,090,355)(74,253,314 - 74,253,846)
sequence
gaattcaggacctctggaagagcagccagtgctcttaacctctaagccat
ctctccaacccagcttcttgtcacctaactgtaccagctcttctgtctta
atgtccttgatttctcttaatctcattcttccttcatttgcacgtgtatc
ccaggactccacagtcttctccagcccttagtcacagcctaatccatgac
ttaccactttgtcccttacaaagatccaggtgcactcttgcaagaacatg
tgttctggatgtgacgaggatgcactcacagcctcttaacaacatggttg
tctgcataatgtagcactaaaccaacacagatagggaaccagttcacaag
gccccacctttaattgaaaagctaaaggcggggagctgggaagatggctc
atcagtgcagagcacatatcaacctgtggaattaagctcttccagaagac
ctgagttcgatccccagcaccggcatcaggtggctcacaaacacctgaga
cttcagctccagagggatctttggtttcggcaggaaaaatacactcgctg
gcatgcacatgcccatcttccctcatagccgaaaataaaaatgaaaacaa
cgaaaagctacagaagtcaatagcttctgttctgagagatggcgtgtgtg
cgtgtgtgtgtgcgtgtgtgtgtgtgcgtgtgtgtgtgtgcgtgtgtgtg
tgtgtgtgt
tgagacggtaaccacgggcacttttgttttatctacttctctgacaaagg
gaggaagaaacatcactctgcatatgtgtgggtggcacatcgctttgcgc
atgtatataggcctttggacctcctatataggccgtgtctcttctagcat
ttgcccaaaagttctggctcacagttcctaaaacccttgcaatttcctaa
gctgatttagaataatgttattatctttggctaaaatatttagcctttct
tgtctttgcttcctggcatggttgatgagaaataattaccactgttgctc
agaggtgactccttgccagcatatctgagctgtgtttacctggctgggct
tttttaaatgggatccggttattactggtattctctaggagatcatggac
ctgggacttttagactctttcccaagcacatcaacaatgagaacgatgcc
tacatcaccaagactccataaagcctcaagaggatggtctcaaagcttcc
tttttggtgagcaaggatacattcgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_74089647_74090355
seq2: B6Ng01-165H17.b_40_748

seq1  GAATTCAGGACCTCTGGAAGAGCAGCCAGTGCTCTTAACCTCTAAGCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGACCTCTGGAAGAGCAGCCAGTGCTCTTAACCTCTAAGCCAT  50

seq1  CTCTCCAACCCAGCTTCTTGTCACCTAACTGTACCAGCTCTTCTGTCTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCAACCCAGCTTCTTGTCACCTAACTGTACCAGCTCTTCTGTCTTA  100

seq1  ATGTCCTTGATTTCTCTTAATCTCATTCTTCCTTCATTTGCACGTGTATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCTTGATTTCTCTTAATCTCATTCTTCCTTCATTTGCACGTGTATC  150

seq1  CCAGGACTCCACAGTCTTCTCCAGCCCTTAGTCACAGCCTAATCCATGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGACTCCACAGTCTTCTCCAGCCCTTAGTCACAGCCTAATCCATGAC  200

seq1  TTACCACTTTGTCCCTTACAAAGATCCAGGTGCACTCTTGCAAGAACATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCACTTTGTCCCTTACAAAGATCCAGGTGCACTCTTGCAAGAACATG  250

seq1  TGTTCTGGATGTGACGAGGATGCACTCACAGCCTCTTAACAACATGGTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTGGATGTGACGAGGATGCACTCACAGCCTCTTAACAACATGGTTG  300

seq1  TCTGCATAATGTAGCACTAAACCAACACAGATAGGGAACCAGTTCACAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCATAATGTAGCACTAAACCAACACAGATAGGGAACCAGTTCACAAG  350

seq1  GCCCCACCTTTAATTGAAAAGCTAAAGGCGGGGAGCTGGGAAGATGGCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCACCTTTAATTGAAAAGCTAAAGGCGGGGAGCTGGGAAGATGGCTC  400

seq1  ATCAGTGCAGAGCACATATCAACCTGTGGAATTAAGCTCTTCCAGAAGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTGCAGAGCACATATCAACCTGTGGAATTAAGCTCTTCCAGAAGAC  450

seq1  CTGAGTTCGATCCCCAGCACCGGCATCAGGTGGCTCACAAACACCTGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTTCGATCCCCAGCACCGGCATCAGGTGGCTCACAAACACCTGAGA  500

seq1  CTTCAGCTCCAGAGGGATCTTTGGTTTCGGCAGGAAAAATACACTCGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGCTCCAGAGGGATCTTTGGTTTCGGCAGGAAAAATACACTCGCTG  550

seq1  GCATGCACATGCCCATCTTCCCTCATAGCCGAAAATAAAAATGAAAACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCACATGCCCATCTTCCCTCATAGCCGAAAATAAAAATGAAAACAA  600

seq1  CGAAAAGCTACAGAAGTCAATAGCTTCTGTTCTGAGAGATGGCGTGTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAAAGCTACAGAAGTCAATAGCTTCTGTTCTGAGAGATGGCGTGTGTG  650

seq1  CGTGTGTGTGTGCGTGTGTGTGTGTGCGTGTGTGTGTGTGCGTGTGTGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTGTGTGTGCGTGTGTGTGTGTGCGTGTGTGTGTGTGCGTGTGTGTG  700

seq1  TGTGTGTGT  709
      |||||||||
seq2  TGTGTGTGT  709

seq1: chr5_74253314_74253846
seq2: B6Ng01-165H17.g_68_599 (reverse)

seq1  ACGGATGTATCCTTGCTCACC-AAATGGATGCTCTGAGACCATCCTCTTG  49
      ||| ||||||||||||||||| ||| ||| ||| ||||||||||||||||
seq2  ACGAATGTATCCTTGCTCACCAAAAAGGAAGCTTTGAGACCATCCTCTTG  50

seq1  AGGCTTTATGGAGTCTTGGTGATGTAGGCATCGTTCTCATTGTTGATGTG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTTATGGAGTCTTGGTGATGTAGGCATCGTTCTCATTGTTGATGTG  100

seq1  CTTGGGAAAGAGTCTAAAAGTCCCAGGTCCATGATCTCATGGAGTATTCC  149
      |||||||||||||||||||||||||||||||||||||| | ||| || ||
seq2  CTTGGGAAAGAGTCTAAAAGTCCCAGGTCCATGATCTCCTAGAGAATACC  150

seq1  ACTAATAACCGGATCCCATTTCCAAAAGCCCAGCCAGGTAAACACAGCTC  199
      | |||||||||||||||||||  |||||||||||||||||||||||||||
seq2  AGTAATAACCGGATCCCATTTAAAAAAGCCCAGCCAGGTAAACACAGCTC  200

seq1  AGATATGCTGGCAAGGAGTCACCTCTGAGCAACAGTGGTAATTATTTCTC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATGCTGGCAAGGAGTCACCTCTGAGCAACAGTGGTAATTATTTCTC  250

seq1  ATCAACCATGCCAGGAAGCAAAGACAAGAAAGGCTAAATATTTTAGCCAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACCATGCCAGGAAGCAAAGACAAGAAAGGCTAAATATTTTAGCCAA  300

seq1  AGATAATAACATTATTCTAAATCAGCTTAGGAAATTGCAAGGGTTTTAGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAATAACATTATTCTAAATCAGCTTAGGAAATTGCAAGGGTTTTAGG  350

seq1  AACTGTGAGCCAGAACTTTTGGGCAAATGCTAGAAGAGACACGGCCTATA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTGAGCCAGAACTTTTGGGCAAATGCTAGAAGAGACACGGCCTATA  400

seq1  TA-CATGTCCAAAGGCCTATATACATGCGCAAAGCGATGTGCCACCCACA  448
      ||  | ||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGGTCCAAAGGCCTATATACATGCGCAAAGCGATGTGCCACCCACA  450

seq1  CATATGCAGAGTGATGTTTCTTCCACCAATAGAGTCAGAGAAGTAGATAA  498
      |||||||||||||||||||||||| ||  |   |||||||||||||||||
seq2  CATATGCAGAGTGATGTTTCTTCCTCCCTT--TGTCAGAGAAGTAGATAA  498

seq1  AACAAAAGTGCCCGTGGTTAACGACATCAGAATTC  533
      |||||||||||||||||||| || | |||||||||
seq2  AACAAAAGTGCCCGTGGTTACCGTC-TCAGAATTC  532