BAC Information

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BAC

Clone NameB6Ng01-165L09
Chromosome5 (Build37)
Map Location 87,400,800 - 87,401,391
singlet/doubletsinglet
Overlap genenone
Upstream geneCenpc1, LOC100039521, AI586015, Ube1l2, Gnrhr, Tmprss11c, Tmprss11d, Tmprss11a, 9930032O22Rik, Tmprss11f, Tmprss11b, Tmprss11e, A730098D12Rik, LOC622056, Ugt2b34, Ugt2b1
Downstream geneLOC665424, LOC545767, Ugt2b35, Ugt2b36, LOC665440, Ugt2b5, LOC435848, Ugt2b37, LOC665468, Ugt2a3, LOC665476, LOC665483, LOC665494, LOC100039818, Ugt2b38, Ugt2a2, Ugt2a1, Sult1b1, Sult1d1, Sult1e1, Csn1s1, Csn2, Csn1s2a, Csn1s2b, 4930432K09Rik, EG654494, Odam, BC037156, Csn3, BC051076, 2310003L06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-165L09.bB6Ng01-165L09.g
ACCDH957695DH957696
length1,256592
definitionDH957695|Mus musculus domesticus DNA, BAC clone: B6Ng01-165L09, 5' end.DH957696|Mus musculus domesticus DNA, BAC clone: B6Ng01-165L09, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctaccaaattttaaaagaatagctaataccaatacttctcaaact
attccagactttagaagcataaagacctttagcaaactcactctatgaga
ccacagtaaccttgatacctaaaccacacaaagggtcaacaaagaaagag
aatttcagatcaattttccttatgaacattcatgaaaaacaccaaataaa
attcaaactgaatcaaagaacctatcaaagacatcatccatcataatcaa
gtatgcttcaaagtagagatgcaggggtggttcaatatatgaaaatctat
tcaattaacacacaatataaaaaacttaaagaaaaaaaacaaaagaggat
catcccttaagatgaaaaaaacatttaacaaaatccaacacctgttctgg
ttaaaagtcctagagagatcaaggattcaaggttcatatataattacaat
aaaggtaatatatagaatgcaaatagtcaccaacaaattaaacggaaaga
aacttaaagcaattccactaaaattggaaacaagacaaggttgtgtactt
tctcctcatctcttcaatatagctcttgatggtctagctagagcaagaag
acaactaaaggagatcaaggggatacaagtcagaaagaaacaagtcaaat
tattgcttttcacagatgatatattatacgtaagtgaccccaaaagtcct
aacagagaactcctacagctgataaacaccttcagcaaaatggctagata
caaaattaagtcaaaacaaacaaaccaaaaaacttatccaccctccttta
taaaagggataaatggtctgagaaaggagttatagaaaaaatacccttca
caatggccagaaattgtgagcttaaagctttccaaacatactttaaaaat
gggtgcttaaatgatttaaaggcccttctagcccaccacctacagaggta
gtgtaaattaaagtttattaagatacgggggaaatggacctgtttagaat
tgttctttggagtactcccacctgtgtcatcaggaaataagcaggtcagt
tcacagtactctgcagctaaagcttgatccaccttctcaaaccactttca
gaattatgccagcagtcagttcaagtattggctggaatagccaaatattg
aaaccaggcatcagtggcctaactaagccaaaacagctagctcacgccta
gtcagccaggaccataatggcaaacacacgcgagatccacggagttttgg
ctcttc
gaattctttctgaatagtcaatcttccacagtgaatagttacccccagcc
aaacaagattttcctaagatcctccattaggggaagaaaagtttcccaag
aattagaatcaaggcaaaacagtgtaaaaggagcagttggtccatattaa
gctcaaacttgcttaagatccttaagagtcttaaatgaaatggatgtact
ttctctttgccgaaggttattgggatcaggtgcgttcactctctaggaaa
agagaaaatcctcatgtcttctgaaatctcctgggcataaggcagagcct
ctcgcactggggacatgtacactgatttagaaggaattaattctcttatg
gggcatgagaaacctccttaacattctcggtaagagatggtatggggcag
tgaaaaaactctccatgctgtcagaaaatgcatttgatggacaggattta
ggagtacaggaaatctaatccggagatgggggaacaaaattcgtatggag
aaggggactcttcaacctcatcacagagacaatagataatagaccttcag
gttctatattttcttttcttccttccttccttccttccttcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_87400800_87401391
seq2: B6Ng01-165L09.g_69_660

seq1  GAATTCTTTCTGAATAGTCAATCTTCCACAGTGAATAGTTACCCCCAGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTGAATAGTCAATCTTCCACAGTGAATAGTTACCCCCAGCC  50

seq1  AAACAAGATTTTCCTAAGATCCTCCATTAGGGGAAGAAAAGTTTCCCAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAGATTTTCCTAAGATCCTCCATTAGGGGAAGAAAAGTTTCCCAAG  100

seq1  AATTAGAATCAAGGCAAAACAGTGTAAAAGGAGCAGTTGGTCCATATTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGAATCAAGGCAAAACAGTGTAAAAGGAGCAGTTGGTCCATATTAA  150

seq1  GCTCAAACTTGCTTAAGATCCTTAAGAGTCTTAAATGAAATGGATGTACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAAACTTGCTTAAGATCCTTAAGAGTCTTAAATGAAATGGATGTACT  200

seq1  TTCTCTTTGCCGAAGGTTATTGGGATCAGGTGCGTTCACTCTCTAGGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTTGCCGAAGGTTATTGGGATCAGGTGCGTTCACTCTCTAGGAAA  250

seq1  AGAGAAAATCCTCATGTCTTCTGAAATCTCCTGGGCATAAGGCAGAGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAATCCTCATGTCTTCTGAAATCTCCTGGGCATAAGGCAGAGCCT  300

seq1  CTCGCACTGGGGACATGTACACTGATTTAGAAGGAATTAATTCTCTTATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGCACTGGGGACATGTACACTGATTTAGAAGGAATTAATTCTCTTATG  350

seq1  GGGCATGAGAAACCTCCTTAACATTCTCGGTAAGAGATGGTATGGGGCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATGAGAAACCTCCTTAACATTCTCGGTAAGAGATGGTATGGGGCAG  400

seq1  TGAAAAAACTCTCCATGCTGTCAGAAAATGCATTTGATGGACAGGATTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAAACTCTCCATGCTGTCAGAAAATGCATTTGATGGACAGGATTTA  450

seq1  GGAGTACAGGAAATCTAATCCGGAGATGGGGGAACAAAATTCGTATGGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTACAGGAAATCTAATCCGGAGATGGGGGAACAAAATTCGTATGGAG  500

seq1  AAGGGGACTCTTCAACCTCATCACAGAGACAATAGATAATAGACCTTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGACTCTTCAACCTCATCACAGAGACAATAGATAATAGACCTTCAG  550

seq1  GTTCTATATTTTCTTTTCTTCCTTCCTTCCTTCCTTCCTTCC  592
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTATATTTTCTTTTCTTCCTTCCTTCCTTCCTTCCTTCC  592