BAC Information

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BAC

Clone NameB6Ng01-165L12
Chromosome5 (Build37)
Map Location 14,958,871 - 14,959,984
singlet/doubletsinglet
Overlap geneSpeer8-ps1
Upstream geneSema3e, LOC100042957, Pclo, ENSMUSG00000033219, LOC624245
Downstream geneSpeer4c, Speer4d, 4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-165L12.bB6Ng01-165L12.g
ACCDH957701DH957702
length1,2251,105
definitionDH957701|Mus musculus domesticus DNA, BAC clone: B6Ng01-165L12, 5' end.DH957702|Mus musculus domesticus DNA, BAC clone: B6Ng01-165L12, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctatgagaccttcaaagaagacctaatcccaatactcttcaaact
atcccacaaaatagaaacagaaggaacgctacccaatttgttctatgaag
ccacagttgcacttatacctaaacacacaaagactcaacaaagaaagaga
acttcagaacatttttccttacgaatatcaatgcaaaaaaaaaaactcaa
taaaattcttgcaaaccaaatccaagaacacatcaaaatgatcatttacc
acaatcaagcaggcttcatccaagaaatgcagagataattcaacatacag
aaatccactgaaaaacaaaaaacacatgatcatctcattagattctgaga
agtaatttgataaaatttaacaccccttcatgttaaaagtcttggaaaaa
tcaggaattccaccagaggactcctaaacctgatgaacgacttcagcaaa
gtggctggatataaaattaccttaaacaaatcagtagccttcctctactt
aaggacaaattggctgagaaagaaattacggaaatgacacccttcacaat
agtcacaaataatattagataccttggtgtgactctaaccaagcaagtga
aagatctgtatgacaagaatttcaagtctctgaagaaagaaagttaacag
aaggtggaaagatctcccatgctcatggattgacaggatgaatataataa
aattggccatcttgccaaaaacaaactacagattcaatgcaatctccatt
aaaagtccaactcaattcttcatagaattagaaacagcaatttgcaaatt
catttggaataacaaaaaatctaggaaagcaaaaactattctcaacaaaa
gaacttctagggaaatcaccatcccgaacctcaagctgtattacagagca
atagtgataaaactttatggtattggtacagagagaggcaggatagatca
gtggaatagaattgagacccagaaatgacttacacactctggtcacttga
tcttgagaagcgtaacccattcagttggaaaaagacagcatttcaacaaa
tggtgctgttcactggcagttatcgtgtagaagaagcaatggatcattct
atctctgtcaagcttatgtcagtgatcaagaccccaatagccgatcactg
aactataaaaaattgccttagcctgacattgcatggggatttttctggaa
cggaacatgatgctatatatgtgct

gaattctgcactaaacccatctgttcctgggatttgtttggttgggagac
tattcatgactgcttctaattctttaagggttatgggacagtcttagctc
aggggcatagatagagacccaaccttaccagttctcctgtctggtggcac
agtctactttgccccacaatgaaatgtggatgttgtagattaaagaatat
attgaaatatgagcagtaaaatgaaaatcattcattgagagaaaaaaaat
tgtcttcaagtggtcattcttaatccaacctttttacaaaaccttaataa
atattcttacaaaataagcatgaaattaattgtaaaagaagaaagaaatg
tttctggcctcttgccataattgattttcaaattttttcttattaatgtt
aattagacattcagagaaagtagacttgagaaacagtttctagttgatat
gtaaatggtacttaacaggtcacagagatggctgaaggagcaaggaccta
gaggatattcaaagaatggttcattattggccaagtggtgcttaacactc
tcataagtaacttctctcacctctaatcatgtaactatggttctatacta
tatgtaatccatatctgtttctttttatcaatatcctttaagactaccaa
gcactatatattttcaatgtaataattgagcaatatgctcaagtgtcttg
ttgcattacgtgtaaaaatttgcaataatctttgagaataagaaaaattt
tatttttgctcagatataatatgtcttcgttagggttttgctgctgtaac
agacactatgaccgtggcaactcttaaaggagaccatttaattgggcctg
tcctacaggttcagaggttcagtccattatcatcaaggaaggagcatggc
agtgccagggcagccatggtcagagagctgagaattctacatcttcatct
gaaggccagttggagaagactggctcaggagctaggagaaggttctcaag
catgacagtacttccttctcaacaagccatacctactccatcctcctaac
agtgcatctggccaagccatattccaggcccacctacacttactacttgt
ctata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_14958871_14959984
seq2: B6Ng01-165L12.g_70_1174

seq1  GAATTCAGCACTAAACCCATCTGTTCCTGGGATTTGTTCGGTTGGGTGAC  50
      |||||| ||||||||||||||||||||||||||||||| ||||||| |||
seq2  GAATTCTGCACTAAACCCATCTGTTCCTGGGATTTGTTTGGTTGGGAGAC  50

seq1  TATTAATGACTGCTTCTAATTCTTTAAGGGTTATGGGACAGCCTTAGCTC  100
      |||| |||||||||||||||||||||||||||||||||||| ||||||||
seq2  TATTCATGACTGCTTCTAATTCTTTAAGGGTTATGGGACAGTCTTAGCTC  100

seq1  AGGGGCATAGATAGAGACCCAACCTTACCAGTTCTCCTGTCTGGTGGCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCATAGATAGAGACCCAACCTTACCAGTTCTCCTGTCTGGTGGCAC  150

seq1  AGTCCACTTTGCCCCACAATGAAATGTGGATGTTGTAGATTAAAGAATAT  200
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTACTTTGCCCCACAATGAAATGTGGATGTTGTAGATTAAAGAATAT  200

seq1  ATTGAAATATGAGCAGTAAAATGAAAATCATTCATTGAGAG-AAAAAAAT  249
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ATTGAAATATGAGCAGTAAAATGAAAATCATTCATTGAGAGAAAAAAAAT  250

seq1  TGTCTCCAAGTGGTCATTCTTAATCCAACCTTTTTACAAAACCTTAATAA  299
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCAAGTGGTCATTCTTAATCCAACCTTTTTACAAAACCTTAATAA  300

seq1  ATATTCTTACAAAATAAGCATGAAATTAATTGTAAAAGAAGAAAGAAATG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCTTACAAAATAAGCATGAAATTAATTGTAAAAGAAGAAAGAAATG  350

seq1  TTTCTGGCCTCTTGCCATAATTGATTTTCAATTTTTTTCTTATTAATTTT  399
      ||||||||||||||||||||||||||||||| ||||||||||||||| ||
seq2  TTTCTGGCCTCTTGCCATAATTGATTTTCAAATTTTTTCTTATTAATGTT  400

seq1  AATTAGACATTCAGAGAAAGTAGACTTGAGAAACAGTTTCTAGTTGATAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGACATTCAGAGAAAGTAGACTTGAGAAACAGTTTCTAGTTGATAT  450

seq1  GTAAATGGTACTTAACAGGTCACAGAGATGACTGAAGGAGCAAGGACCTA  499
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GTAAATGGTACTTAACAGGTCACAGAGATGGCTGAAGGAGCAAGGACCTA  500

seq1  GAGGATATTCAAAGAATGGTTCATTATTGGCCAAGTGGTGCTTAACACTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATATTCAAAGAATGGTTCATTATTGGCCAAGTGGTGCTTAACACTC  550

seq1  TCATAAGTAACTTCTCTCACCTCTAATCATGTAACTATGGTTCTATACTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAGTAACTTCTCTCACCTCTAATCATGTAACTATGGTTCTATACTA  600

seq1  TATGTAATCCATATCTGTTTCTTTTTATCAATATCCTTTAAGACTACCCA  649
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TATGTAATCCATATCTGTTTCTTTTTATCAATATCCTTTAAGACTACCAA  650

seq1  GCACTATATATTTTCAATGTAATAATTGAGCAATATGCTCAAGTGTCTTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTATATATTTTCAATGTAATAATTGAGCAATATGCTCAAGTGTCTTG  700

seq1  TTGCATTATGTGTAAAAATTTGCAATAATCTTTGAGAATAAGAAAAATTT  749
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATTACGTGTAAAAATTTGCAATAATCTTTGAGAATAAGAAAAATTT  750

seq1  TATTTTTGCCCAGATATAATATGTCTTAGTTAGGGTTTTGCTGCTGTAAA  799
      ||||||||| ||||||||||||||||| ||||||||||||||||||| ||
seq2  TATTTTTGCTCAGATATAATATGTCTTCGTTAGGGTTTTGCTGCTGT-AA  799

seq1  CAGACACTATGACCATGGCAACTCTTAAAAGGAGACCATTTAATTGGGCC  849
      |||||||||||||| ||||||||||| |||||||||||||||||||||||
seq2  CAGACACTATGACCGTGGCAACTCTT-AAAGGAGACCATTTAATTGGGCC  848

seq1  TGTCCTACAGGTTCAGAGGTTCAGTCCATTATCATCAAGGCAGGAGCATG  899
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TGTCCTACAGGTTCAGAGGTTCAGTCCATTATCATCAAGGAAGGAGCATG  898

seq1  GCAGTGCCAGGGCAGGCATGGTTCAGGAGGAGCTGAGAGTTCTACATCTT  949
      ||||||||||||||| ||||| ||||   ||||||||| |||||||||||
seq2  GCAGTGCCAGGGCAGCCATGG-TCAG--AGAGCTGAGAATTCTACATCTT  945

seq1  CATCTGAAGGCCAGTTGGAGAAGACTGGCATCCAGGAAGCTAGGAGGGAG  999
      |||||||||||||||||||||||||||||   |||| |||||||||   |
seq2  CATCTGAAGGCCAGTTGGAGAAGACTGGC--TCAGG-AGCTAGGAGAAGG  992

seq1  GTCTCAAAGCATGACAG-ACTTCCTTCCTCCAACAAGGCCATACCTACTC  1048
       |||| ||||||||||| |||||||||   |||||| |||||||||||||
seq2  TTCTC-AAGCATGACAGTACTTCCTTC--TCAACAA-GCCATACCTACTC  1038

seq1  CATACCTCCTAACAGTGCCATCCTGGGCCAAG-CATATTCAAG--CCACC  1095
      ||| ||||||||||||| ||||   ||||||| ||||||| ||  |||||
seq2  CAT-CCTCCTAACAGTG-CATC--TGGCCAAGCCATATTCCAGGCCCACC  1084

seq1  -ACAC-TACTACTTGTCTATA  1114
       |||| |||||||||||||||
seq2  TACACTTACTACTTGTCTATA  1105


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