BAC Information

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BAC

Clone NameB6Ng01-165O19
Chromosome5 (Build37)
Map Location 41,132,379 - 41,272,835
singlet/doubletdoublet
Overlap genenone
Upstream geneHs3st1, EG665839, LOC100040502
Downstream geneLOC208522, Rab28, Bapx1, A230054D04Rik, LOC384308
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-165O19.bB6Ng01-165O19.g
ACCDH957849DH957850
length4311,110
definitionDH957849|Mus musculus domesticus DNA, BAC clone: B6Ng01-165O19, 5' end.DH957850|Mus musculus domesticus DNA, BAC clone: B6Ng01-165O19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,132,379 - 41,132,813)(41,271,718 - 41,272,835)
sequence
tttgagaggccaaagcatatcacccaggcctagatctctctggaaaaaca
tgaggattaagtaacacacagtgaaggcttgtccttaatctttagggctg
gtctatttaccttcaagtgttctatatgaaacatattaaataatctgcat
ataggaagtaatagagaagtatgtaagacaggtatatatatatatatata
tgtcttagtaatatatgggggtgttaaatttgtgtgtgtgtgtctagttt
attctcaaatactaaaaatttctagaaacaatatgtaaatatttactgaa
aaaaatgagtacctgctattgtctttgtagattatctgcctacacatgaa
ccatatcttaaaaagaaactgaacaaatgatttgttgatagaactatcat
ctattttaagtggtagtgctttgccagagca
gaattcaatatgtataaatattaacaattgagggaagagaattttccata
tcagcactgaccacatgtacctgcctcataatacattcacttcaacagac
ataaaaaaatagcaaaactctacaactggccactcatgtagcaataactg
tagcaattatagagactgcttcagattgctgtatatgctgttggccaagt
gttaaataatgcagtataaattaataatgcattttaataaaatgttcatt
ctccttcttatatatactcgtttattcaacttggcttctttatttgaggt
tttcgctattcttcttgtattgtcctctatccatcctgttccaactgcca
cgctaattacttcctaaatcttagtgaaaatctatcatttctttgtattc
ttcttctcttccctcaatcctaactttcttcatttttaatcttagattga
catatttccttgtctccttcatgctcctttaaactagtttatttttattt
ctggcattcagtgtttcctgctcttgaaaaaggacttagttttttctttc
aagagtacttagatgagaaaaaagggaaatcacaaaaggcaacataactg
cttccttgaattcttatctcaaaagacctttcagacttcaactatggcat
gcacaccctagaaaagaatatgggccttcaaaagtcacatgctctcagga
cacagaacacaaacctgagatactcgtgactgggtaatgtctttgaaata
ctggttagtatttacttagggacatggtgacatgagtactggtttcattg
tggatgacctaaaagcctctagaacaagactgttcaaacattagctcatt
tactttttttgagtccatttttatgttgtattaatgcaaccccacagagt
agataagtagtaaaggaaagagattgtattcacatgtgatagtagacatg
ctatggagggcatctagtgatggcattggctggcagattcccaaatggtc
tctgcttaacaggccacgtgttctctgagggttttcagttttcttgttat
aaagcaccaggcgatccattggattccaagaaggtgactacttattccaa
taacctccaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_41132379_41132813
seq2: B6Ng01-165O19.b_45_481

seq1  GAATTCTTTGAGAGGCCAAAGCATATCACCCAGGCCTAGATCTCTCTGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGAGAGGCCAAAGCATATCACCCAGGCCTAGATCTCTCTGGA  50

seq1  AAAACATGAGGATTAAGTAACACACAGTGAAGGCTTGTCCTTAATCTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATGAGGATTAAGTAACACACAGTGAAGGCTTGTCCTTAATCTTTA  100

seq1  GGGCTGGTCTATTTACCTTCAAGTGTTCTATATGAAACATATTAAATAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGGTCTATTTACCTTCAAGTGTTCTATATGAAACATATTAAATAAT  150

seq1  CTGCATATAGGAAGTAATAGAGAAGTATGTAAGACAGGTATATATATATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATATAGGAAGTAATAGAGAAGTATGTAAGACAGGTATATATATATA  200

seq1  TATATATGTCTTAGTAATATATGGGGGTGTTAAATTTGTGTGTGTGTGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATGTCTTAGTAATATATGGGGGTGTTAAATTTGTGTGTGTGTGTC  250

seq1  TAGTTTATTCTCAAATACTAAAAATTTCTAGAAACAATATGTAAATATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTATTCTCAAATACTAAAAATTTCTAGAAACAATATGTAAATATTT  300

seq1  ACTGAAAAAAATGAGTACCTGCTATTGTCTTTGTAGATTATCTG-CTACA  349
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ACTGAAAAAAATGAGTACCTGCTATTGTCTTTGTAGATTATCTGCCTACA  350

seq1  CATGAACCATATCTTAAAAAGAAACTGAACAAATGATTTGTTGATAGAAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAACCATATCTTAAAAAGAAACTGAACAAATGATTTGTTGATAGAAC  400

seq1  TATCATCTATAGTAAGT-GCAGTGCTTTGCCAGAGCA  435
      ||||||||||  ||||| | |||||||||||||||||
seq2  TATCATCTATTTTAAGTGGTAGTGCTTTGCCAGAGCA  437

seq1: chr5_41271718_41272835
seq2: B6Ng01-165O19.g_70_1179 (reverse)

seq1  TTGGAAGGTTATTGGAATAAGTTAATTCACCTTCTTGGAATCCCATGGAT  50
      |||| |||||||||||||||||  | ||||||||||||||||| ||||| 
seq2  TTGG-AGGTTATTGGAATAAGT--AGTCACCTTCTTGGAATCCAATGGA-  46

seq1  TCGCCTTGGTGCTTTATAACAAG-AAACTGAAAACCCTCAGGAGACACGT  99
      ||||| ||||||||||||||||| |||||||||||||||||   ||||||
seq2  TCGCC-TGGTGCTTTATAACAAGAAAACTGAAAACCCTCAGAGAACACGT  95

seq1  GGCCTGTAAGGCAGAGAACCATTTGTGAATCTGCCAGCCAATGCCATCAC  149
      ||||||| | |||||| |||||||| ||||||||||||||||||||||||
seq2  GGCCTGTTAAGCAGAG-ACCATTTGGGAATCTGCCAGCCAATGCCATCAC  144

seq1  TAGATGCCCTCCATAGCCTTGTTCTACTATCACATGTGAATACAATCTCT  199
      ||||||||||||||||| |   ||||||||||||||||||||||||||||
seq2  TAGATGCCCTCCATAGCAT--GTCTACTATCACATGTGAATACAATCTCT  192

seq1  TTCCTTTACTACTTATCTACTCTGTGGGGTTGCATTAATAACAACATAAA  249
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TTCCTTTACTACTTATCTACTCTGTGGGGTTGCATTAAT-ACAACATAAA  241

seq1  AATGGACTCAAAAAAAGTAAATGAGCTAATGTTTGAACAGTCTTGTTCTA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGACTCAAAAAAAGTAAATGAGCTAATGTTTGAACAGTCTTGTTCTA  291

seq1  GAGGCTTTTAGGTCATCCACAATGAAACCAGTACTCATGTCACCATGTCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTTTTAGGTCATCCACAATGAAACCAGTACTCATGTCACCATGTCC  341

seq1  CTAAGTAAATACTAACCAGTATTTCAAAGACATTACCCAGTCACGAGTAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTAAATACTAACCAGTATTTCAAAGACATTACCCAGTCACGAGTAT  391

seq1  CTCAGGTTTGTGTTCTGTGTCCTGAGAGCATGTGACTTTTGAAGGCCCAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGTTTGTGTTCTGTGTCCTGAGAGCATGTGACTTTTGAAGGCCCAT  441

seq1  ATTCTTTTCTAGGGTGTGCATGCCATAGTTGAAGTCTGAAAGGTCTTTTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTTCTAGGGTGTGCATGCCATAGTTGAAGTCTGAAAGGTCTTTTG  491

seq1  AGATAAGAATTCAAGGAAGCAGTTATGTTGCCTTTTGTGATTTCCCTTTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAGAATTCAAGGAAGCAGTTATGTTGCCTTTTGTGATTTCCCTTTT  541

seq1  TTCTCATCTAAGTACTCTTGAAAGAAAAAACTAAGTCCTTTTTCAAGAGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCATCTAAGTACTCTTGAAAGAAAAAACTAAGTCCTTTTTCAAGAGC  591

seq1  AGGAAACACTGAATGCCAGAAATAAAAATAAACTAGTTTAAAGGAGCATG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAACACTGAATGCCAGAAATAAAAATAAACTAGTTTAAAGGAGCATG  641

seq1  AAGGAGACAAGGAAATATGTCAATCTAAGATTAAAAATGAAGAAAGTTAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGACAAGGAAATATGTCAATCTAAGATTAAAAATGAAGAAAGTTAG  691

seq1  GATTGAGGGAAGAGAAGAAGAATACAAAGAAATGATAGATTTTCACTAAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGAGGGAAGAGAAGAAGAATACAAAGAAATGATAGATTTTCACTAAG  741

seq1  ATTTAGGAAGTAATTAGCGTGGCAGTTGGAACAGGATGGATAGAGGACAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGGAAGTAATTAGCGTGGCAGTTGGAACAGGATGGATAGAGGACAA  791

seq1  TACAAGAAGAATAGCGAAAACCTCAAATAAAGAAGCCAAGTTGAATAAAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGAAGAATAGCGAAAACCTCAAATAAAGAAGCCAAGTTGAATAAAC  841

seq1  GAGTATATATAAGAAGGAGAATGAACATTTTATTAAAATGCATTATTAAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATATATAAGAAGGAGAATGAACATTTTATTAAAATGCATTATTAAT  891

seq1  TTATACTGCATTATTTAACACTTGGCCAACAGCATATACAGCAATCTGAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACTGCATTATTTAACACTTGGCCAACAGCATATACAGCAATCTGAA  941

seq1  GCAGTCTCTATAATTGCTACAGTTATTGCTACATGAGTGGCCAGTTGTAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCTCTATAATTGCTACAGTTATTGCTACATGAGTGGCCAGTTGTAG  991

seq1  AGTTTTGCTATTTTTTTATGTCTGTTGAAGTGAATGTATTATGAGGCAGG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTGCTATTTTTTTATGTCTGTTGAAGTGAATGTATTATGAGGCAGG  1041

seq1  TACATGTGGTCAGTGCTGATATGGAAAATTCTCTTCCCTCAATTGTTAAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGTGGTCAGTGCTGATATGGAAAATTCTCTTCCCTCAATTGTTAAT  1091

seq1  ATTTATACATATTGAATTC  1118
      |||||||||||||||||||
seq2  ATTTATACATATTGAATTC  1110