BAC Information

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BAC

Clone NameB6Ng01-166A04
Chromosome5 (Build37)
Map Location 48,845,383 - 48,982,626
singlet/doubletdoublet
Overlap geneKcnip4
Upstream geneLOC100040865, LOC100040876, Slit2, 4933428G09Rik
Downstream geneLOC100041668, LOC100041659, EG433885
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-166A04.bB6Ng01-166A04.g
ACCDH957911DH957912
length1,1951,054
definitionDH957911|Mus musculus domesticus DNA, BAC clone: B6Ng01-166A04, 5' end.DH957912|Mus musculus domesticus DNA, BAC clone: B6Ng01-166A04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,845,383 - 48,846,599)(48,981,556 - 48,982,626)
sequence
gaattccaaaatgttgtcagatacttagtttcacataattaacaaaggca
ttgccaaacttagccatcctttttgtggtgaacactcagttatcactttt
gttgtgagctcttattacacgcactgctcattttagggtagagcattttg
aaatcgagtctcaggaagtaacacagaatggctttaaattcaatcatttt
gcttcagatgcttaagtgtaagattataggtgtttacgaccatgcctagc
ttctctttacattctctagaaagataatatattatcattaataatagtca
tttggatatattataggtctctagaaatacattttccttatctaacagga
aatactttaatcaaatattcccatatcttctcctgctgacatattttagc
ctttgctgaccatcattagactcagtacttttaaagctttatctttatta
aaatcaaggattcactatttgagctcagttagctgctattttctttcttg
gtaaattgaatttgccttggcctagaggacatagagatatgattgtggaa
atacatccatgcagaaataaacaatcaaaatcatgctttgaagttcagat
tggtttaatagaatgttttaatttagaagcattcaaaggaattttaatag
agaaggaaaagagtgactattttattcatggcaaccattagcaagtagta
ttaggttagccacattatctgctgagaaaacacttttgtaaagaactgta
aatctctggagaggcaggaatattaacaaagactgaaaacatacatacaa
gtaaagttatacaaaccaagaacgttgtatttatgtatgtagaaacacac
acacacatgcaaattatgtgtgtttaataatgtttgtaataaattttaaa
taattaaaaaattatgtaacaatgattaaaaagagagatgatgaatttta
aagagaacaatgagggcacatgagagattttgaatggaggcaggaaggag
aaatgttatatatataatctcgaaataaataatattgtacatgtctattt
tagtataatttaaattccttttatttttattctttaagatttgacatcat
acaagaaaaatattaagtgagctttatccatccactccaatatacctcct
tctcttcaacttctccaaggttcttaacctcagacttccttaaaa
gaattcactgtcttgatgtttatataagctgtgtttgttttgtgaagaga
ttgtagaaattcacctgtttcattggcatgtggggagtttttaggtattt
gaactcactgttttatcagaacagcactgatggacactgtcagtgctgtt
gattaggggatattttgaaggcaagaactaaatatgatgttgagaagctc
agaactattggcaactggtgatttcaatatactgtgtcttagaattatac
tactaatgccatttagtagtataatttggaggtttaactctgagcaggca
acatctccactgtagcttgaaaatgctccaccattttccttccttcttaa
ttagaatgtgcttcttttatgaaaagggctcagctttttctcaaacatga
aacctaagccatcaatccgggcaataagaaagaattagattatttgcttt
ttaaaagacaacatttctaataaataaatttacaaatttgctcatctcta
aaaaatattattgtgaaattattgctttgcatagtcgcataaatattttc
tatacgttaaggaatgtgaatgaagccagacatggtggcgcatgccttta
atcccagcacttgggagacagaggcaggcagatccgtgagttcaagcctg
agtttcaggagagccaaggctacacatagaaaccctaactcaaacgaaac
aaaacaaaacaaaacacaaatcacaacaacaacagaacaaaacaaaaaca
aaaagtgagatgagacaatgtctctttttaagtgtcacccaaagaaggct
gtgtgtgaacagccacatccctagctggtggatttgctcattgtgaggtg
gtttgtcttaggaggattgtgacctaatcactgattagtaatctgctgag
tgcatgacttaatggcattacgcggagttatggagatatagtggctgtct
tcagaggagacatgagaggcatgccctcctgagcttctcttctggtccat
tcttctcatatcctactcttggcttctgagtatcttccttgtcacgtgct
ctac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_48845383_48846599
seq2: B6Ng01-166A04.b_44_1238

seq1  GAATTCCAAAATGTTGTCAGATACTTAGTTTCACATAATTAACAAAGGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAAATGTTGTCAGATACTTAGTTTCACATAATTAACAAAGGCA  50

seq1  TTGCCAAACTTAGCCATCCTTTTTGTGGTGAACACTCAGTTATCACTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCAAACTTAGCCATCCTTTTTGTGGTGAACACTCAGTTATCACTTTT  100

seq1  GTTGTGAGCTCTTATTACACGCACTGCTCATTTTAGGGTAGAGCATTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGAGCTCTTATTACACGCACTGCTCATTTTAGGGTAGAGCATTTTG  150

seq1  AAATCGAGTCTCAGGAAGTAACACAGAATGGCTTTAAATTCAATCATTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCGAGTCTCAGGAAGTAACACAGAATGGCTTTAAATTCAATCATTTT  200

seq1  GCTTCAGATGCTTAAGTGTAAGATTATAGGTGTTTACGACCATGCCTAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCAGATGCTTAAGTGTAAGATTATAGGTGTTTACGACCATGCCTAGC  250

seq1  TTCTCTTTACATTCTCTAGAAAGATAATATATTATCATTAATAATAGTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTTACATTCTCTAGAAAGATAATATATTATCATTAATAATAGTCA  300

seq1  TTTGGATATATTATAGGTCTCTAGAAATACATTTTCCTTATCTAACAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGATATATTATAGGTCTCTAGAAATACATTTTCCTTATCTAACAGGA  350

seq1  AATACTTTAATCAAATATTCCCATATCTTCTCCTGCTGACATATTTTAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTTTAATCAAATATTCCCATATCTTCTCCTGCTGACATATTTTAGC  400

seq1  CTTTGCTGACCATCATTAGACTCAGTACTTTTAAAGCTTTATCTTTATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCTGACCATCATTAGACTCAGTACTTTTAAAGCTTTATCTTTATTA  450

seq1  AAATCAAGGATTCACTATTTGAGCTCAGTTAGCTGCTATTTTCTTTCTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAAGGATTCACTATTTGAGCTCAGTTAGCTGCTATTTTCTTTCTTG  500

seq1  GTAAATTGAATTTGCCTTGGCCTAGAGGACATAGAGATATGATTGTGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATTGAATTTGCCTTGGCCTAGAGGACATAGAGATATGATTGTGGAA  550

seq1  ATACATCCATGCAGAAATAAACAATCAAAATCATGCTTTGAAGTTCAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATCCATGCAGAAATAAACAATCAAAATCATGCTTTGAAGTTCAGAT  600

seq1  TGGTTTAATAGAATGTTTTAATTTAGAAGCATTCAAAGGAATTTTAATAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTAATAGAATGTTTTAATTTAGAAGCATTCAAAGGAATTTTAATAG  650

seq1  AGAAGGAAAAGAGTGACTATTTTATTCATGGCAACCATTAGCAAGTAGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGAAAAGAGTGACTATTTTATTCATGGCAACCATTAGCAAGTAGTA  700

seq1  TTAGGTTAGCCACATTATCTGCTGAGAAAACACTTTTGTAAAGAACTGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTTAGCCACATTATCTGCTGAGAAAACACTTTTGTAAAGAACTGTA  750

seq1  AATCTCTGGAGAGGCAGGAATATTAACAAAGACTGAAAACATACATACAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCTGGAGAGGCAGGAATATTAACAAAGACTGAAAACATACATACAA  800

seq1  GTAAAGTTATACAAACCAAGAACGTTGTATTTATGTATGTAGAAACACAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGTTATACAAACCAAGAACGTTGTATTTATGTATGTAGAAACACAC  850

seq1  ACACACATGCAAATTATGTGTGTTTAATAATGTTTGTAATAAATTTTAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACATGCAAATTATGTGTGTTTAATAATGTTTGTAATAAATTTTAAA  900

seq1  TAATTAAAAAATTATGTAACAATGATTAAAAAAGAGAGATGATGAATTTT  950
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TAATTAAAAAATTATGTAACAATGATT-AAAAAGAGAGATGATGAATTTT  949

seq1  AAAGAGAACAATGAGGGGCACATGAGAGATTTTGAATGGAGGCAAGGGAA  1000
      |||||||||||||| |||||||||||||||||||||||||||||  ||||
seq2  AAAGAGAACAATGA-GGGCACATGAGAGATTTTGAATGGAGGCA--GGAA  996

seq1  GGAGGAAATGTTATTATATTATAATCTCAAAAAAATAAAAAAATAAAAAT  1050
      ||| ||||||||| |||| ||||||||| ||| |          || |||
seq2  GGA-GAAATGTTA-TATA-TATAATCTCGAAATA----------AATAAT  1033

seq1  ATTGTACATGTCTATTTTAGTTATAATTTTAAAATTCCTTTTATTTTTAT  1100
      |||||||||||||||||||| ||||||||  |||||||||||||||||||
seq2  ATTGTACATGTCTATTTTAG-TATAATTT--AAATTCCTTTTATTTTTAT  1080

seq1  TCTTTAAGAATTTGACATTCATACAAG-AAAATATATAGTGAGCTATAAT  1149
      |||||||| |||||||| ||||||||| |||||||  |||||||| ||  
seq2  TCTTTAAG-ATTTGACA-TCATACAAGAAAAATATTAAGTGAGCTTTA--  1126

seq1  CCCATCCACTCC-ATATACCTCC-TCTCTTCAAC-TCTCCATAGTTCTTA  1196
       ||||||||||| |||||||||| |||||||||| ||||||  |||||||
seq2  TCCATCCACTCCAATATACCTCCTTCTCTTCAACTTCTCCAAGGTTCTTA  1176

seq1  ACTTCAAGACTTTCATTAAAA  1217
      || || |||| ||| ||||||
seq2  ACCTC-AGAC-TTCCTTAAAA  1195

seq1: chr5_48981556_48982626
seq2: B6Ng01-166A04.g_67_1120 (reverse)

seq1  GTAGAAGCACGTGACAAAGGAAGATACTCAGAAGCCAAGGAGTAGGGATT  50
      |||| |||||||||| |||||||||||||||||||||| |||||||   |
seq2  GTAG-AGCACGTGAC-AAGGAAGATACTCAGAAGCCAA-GAGTAGG--AT  45

seq1  ATGAGAAGAATGGGACCAGGAAAGGAGAAGCCTCCAAGGAGGGCATGCCT  100
      ||||||||||| |||||||   | |||||| |||  ||||||||||||||
seq2  ATGAGAAGAAT-GGACCAG---AAGAGAAG-CTC--AGGAGGGCATGCCT  88

seq1  CTCATGTCCTCCTTCCTGAAGACAGCCACTATATCTCCATAACCTCCGCC  150
      ||||||| |||||  ||||||||||||||||||||||||||| ||||| |
seq2  CTCATGT-CTCCT--CTGAAGACAGCCACTATATCTCCATAA-CTCCG-C  133

seq1  GTAATGCCATTAAGTCATGCACTCAGCAGATTACTAATCAGTGATTAGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGCCATTAAGTCATGCACTCAGCAGATTACTAATCAGTGATTAGGT  183

seq1  CACAATCCTCCTAAGACAAACCACCTCACAATGAGCAAATCCACCAGCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATCCTCCTAAGACAAACCACCTCACAATGAGCAAATCCACCAGCTA  233

seq1  GGGATGTGGCTGTTCACACACAGCCTTCTTTGGGTGACACTTAAAAAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGTGGCTGTTCACACACAGCCTTCTTTGGGTGACACTTAAAAAGAG  283

seq1  ACATTGTCTCATCTCACTTTTTGTTTTTGTTTTGTTCTGTTGTTGTTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGTCTCATCTCACTTTTTGTTTTTGTTTTGTTCTGTTGTTGTTGTG  333

seq1  ATTTGTGTTTTGTTTTGTTTTGTTTCGTTTGAGTTAGGGTTTCTATGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTGTTTTGTTTTGTTTTGTTTCGTTTGAGTTAGGGTTTCTATGTGT  383

seq1  AGCCTTGGCTCTCCTGAAACTCAGGCTTGAACTCACGGATCTGCCTGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTGGCTCTCCTGAAACTCAGGCTTGAACTCACGGATCTGCCTGCCT  433

seq1  CTGTCTCCCAAGTGCTGGGATTAAAGGCATGCGCCACCATGTCTGGCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCCCAAGTGCTGGGATTAAAGGCATGCGCCACCATGTCTGGCTTC  483

seq1  ATTCACATTCCTTAACGTATAGAAAATATTTATGCGACTATGCAAAGCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACATTCCTTAACGTATAGAAAATATTTATGCGACTATGCAAAGCAA  533

seq1  TAATTTCACAATAATATTTTTTAGAGATGAGCAAATTTGTAAATTTATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTCACAATAATATTTTTTAGAGATGAGCAAATTTGTAAATTTATTT  583

seq1  ATTAGAAATGTTGTCTTTTAAAAAGCAAATAATCTAATTCTTTCTTATTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAAATGTTGTCTTTTAAAAAGCAAATAATCTAATTCTTTCTTATTG  633

seq1  CCCGGATTGATGGCTTAGGTTTCATGTTTGAGAAAAAGCTGAGCCCTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGATTGATGGCTTAGGTTTCATGTTTGAGAAAAAGCTGAGCCCTTTT  683

seq1  CATAAAAGAAGCACATTCTAATTAAGAAGGAAGGAAAATGGTGGAGCATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAAGAAGCACATTCTAATTAAGAAGGAAGGAAAATGGTGGAGCATT  733

seq1  TTCAAGCTACAGTGGAGATGTTGCCTGCTCAGAGTTAAACCTCCAAATTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGCTACAGTGGAGATGTTGCCTGCTCAGAGTTAAACCTCCAAATTA  783

seq1  TACTACTAAATGGCATTAGTAGTATAATTCTAAGACACAGTATATTGAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACTAAATGGCATTAGTAGTATAATTCTAAGACACAGTATATTGAAA  833

seq1  TCACCAGTTGCCAATAGTTCTGAGCTTCTCAACATCATATTTAGTTCTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCAGTTGCCAATAGTTCTGAGCTTCTCAACATCATATTTAGTTCTTG  883

seq1  CCTTCAAAATATCCCCTAATCAACAGCACTGACAGTGTCCATCAGTGCTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAAAATATCCCCTAATCAACAGCACTGACAGTGTCCATCAGTGCTG  933

seq1  TTCTGATAAAACAGTGAGTTCAAATACCTAAAAACTCCCCACATGCCAAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGATAAAACAGTGAGTTCAAATACCTAAAAACTCCCCACATGCCAAT  983

seq1  GAAACAGGTGAATTTCTACAATCTCTTCACAAAACAAACACAGCTTATAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAGGTGAATTTCTACAATCTCTTCACAAAACAAACACAGCTTATAT  1033

seq1  AAACATCAAGACAGTGAATTC  1071
      |||||||||||||||||||||
seq2  AAACATCAAGACAGTGAATTC  1054