BAC Information

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BAC

Clone NameB6Ng01-166D21
Chromosome5 (Build37)
Map Location 83,436,538 - 83,492,429
singlet/doubletdoublet
Overlap geneLOC100039434
Upstream geneEG433912
Downstream geneSrd5a2l2, LOC100039608, LOC231368, Epha5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-166D21.bB6Ng01-166D21.g
ACCDH958075DH958076
length1,1131,140
definitionDH958075|Mus musculus domesticus DNA, BAC clone: B6Ng01-166D21, 5' end.DH958076|Mus musculus domesticus DNA, BAC clone: B6Ng01-166D21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,491,312 - 83,492,429)(83,436,538 - 83,437,692)
sequence
gaattcaagaggaaaacattatgctggcataagcaaagttttctgagttt
gaaaagtagtggaaatgatagatattatgttgtgaaggttgaaagatttt
aaaatgtcattgatacattcaagggaaaaaatgtgtcaagtcaattagga
acaagatcagcaaattctgtgaaatctggttttatgaaaaccaaaaattt
tctatgagagaatttaattatattcatgttttactcacaaagacgttgaa
gtgaggaatgattttcaggatttaactgaaggtaatgtataaaggatatt
ctcatagatttttcactaaagactcagttctgctagatcttgttaaacac
tgacttctagtacaggaagatcacgtttggtgtttgagagacttgaactg
tagcactcttacattagtgtagaagactctgaatattagtgtaacatgcc
agttccttaaataatacgtatatggcatacactgatagttgcagttggta
aaaatcttccttcacaatcctaggttgctatagattcaacacaagaatca
agtttcatcatttctacagatgatgtttcaggaagaaaaggactagcaat
ctaaaagaacttaaagtctagaaagatacagtaatataagggatgtgtct
ggataaataggcagagatgttgggttaatagactgcaggtgtcacacaca
tgcccacacacacacacacacacacacatgcactaatataatatgtgaat
cagaattttgtacataaaacaatatcgttgacattgtcaaatactagttg
gttatctcataaaatctcaattgtaatgggaatcagaagtaaataaataa
ataagcaaactaaattgggtccaaacaggagtagagtgaaaaatatattg
tggcaaggaattcacgactgagtaaaaactctcaattcagtggcatacta
atagcatatattacataagctaggaatgtttcagattcatttttcttcat
ttgattgaccaaagaaaaattttaaagcaataacagagtaatagaagagc
tactagcactttaagaagtgttcttttatctttcacataacagtttgttc
agtagaatatttc
gaattctgcacttgctatagatatttgttatatcccctctatttatctga
ctgaaactgtattttccttgcaggtatcttgtacaaagctcaattattaa
cacgagatatttcactactaatgactcattttaaaattagatatgaacct
atgcttctgcacttagaatttaaaaaaaaaaatctcagcatcacgttaag
tgttattacaaaaataagtaacctgtagatttttctataggtctttctcc
acagatttaagtttccttgccttaaatcgacagtattttagtttttcatc
tcagaagcaagtgtactttgagtaaagacaggagtgtcgactaaatcttt
gactacttgagtgtaggttatgttagttattttaatttaaaattgaaata
tttttatctaaaaagtgagctgttatttttttgttctatttaaaaatgag
tatcttacgtaggtcaaatagatatgaactgaattgatgtatatcacttg
cgggtaaaagtttaaagaggcaaatacaattaccaatatatcatcccctt
catttgctgatcactggagcagatattagagtaattccacattaaagtga
ctaacagtgttgctctgccactctgagtgttcaaccatggctagtgatta
aatttctgttgccttaagccagtcacatttgaaggatgattttaaacatt
aattaatattggtagcttttctttctaataaaatatgtggttttcactat
tttgtatcccaatcagaaatatatactttaccaggtcccagaattttgtt
catagatttatattaggtttattgtatgaaaatacttgacatatattcta
taaatacttgctatagtcatgaatgaataaatcaatctttagaaattttc
ttcatcataacagaacaatgaaaacatagaggggagtaaatttcatggct
gatcgggatttcgagaaattaaacccagtttttattggtctctcataaag
taaaaatacatatttattgaagagaaagtgataataactgattattgtta
ttatgatgaaataataacatttgttattatttcttaacatattaaaaggc
tagtgctatctttttatatatgtaaggttcgatattttga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_83491312_83492429
seq2: B6Ng01-166D21.b_42_1154 (reverse)

seq1  GAAATATTCCTACTG-ACAAACTTGTTATGTGAAAGAT-AGAGAACACTT  48
      |||||||| |||||| |||||| ||||||||||||||| | |||||||||
seq2  GAAATATT-CTACTGAACAAAC-TGTTATGTGAAAGATAAAAGAACACTT  48

seq1  CTTTAAAGGTTGCTAGTAGCTCTTCTATTACTCTGTTATTTGCTTTAAAA  98
      | ||||||  |||||||||||||||||||||||||||| |||||||||||
seq2  C-TTAAAG--TGCTAGTAGCTCTTCTATTACTCTGTTA-TTGCTTTAAAA  94

seq1  TTTTTCTTTGGTCAATCAAATGAAGAAAAATGAATCTGAAACATTCCTAG  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTTGGTCAATCAAATGAAGAAAAATGAATCTGAAACATTCCTAG  144

seq1  CTTATGTAATATATGCTATTAGTATGCCACTGAATTGAGAGTTTTTTACT  198
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CTTATGTAATATATGCTATTAGTATGCCACTGAATTGAGAG-TTTTTACT  193

seq1  CAGTCCTGAATTCCTTGCCACAATATATTTTTCACTCTACTCCTGTTTGG  248
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCGTGAATTCCTTGCCACAATATATTTTTCACTCTACTCCTGTTTGG  243

seq1  ACCCAATTTAGTTTGCTTATTTATTTATTTACTTCTGATTCCCATTACAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAATTTAGTTTGCTTATTTATTTATTTACTTCTGATTCCCATTACAA  293

seq1  TTGAGATTTTATGAGATAACCAACTAGTATTTGACAATGTCAACGATATT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGATTTTATGAGATAACCAACTAGTATTTGACAATGTCAACGATATT  343

seq1  GTTTTATGTACAAAATTCTGATTCACATATTATATTAGTGCATGTGTGTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTATGTACAAAATTCTGATTCACATATTATATTAGTGCATGTGTGTG  393

seq1  TGTGTGTGTGTGTGTGGGCATGTGTGTGACACCTGCAGTCTATTAACCCA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGGGCATGTGTGTGACACCTGCAGTCTATTAACCCA  443

seq1  ACATCTCTGCCTATTTATCCAGACACATCCCTTATATTACTGTATCTTTC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTCTGCCTATTTATCCAGACACATCCCTTATATTACTGTATCTTTC  493

seq1  TAGACTTTAAGTTCTTTTAGATTGCTAGTCCTTTTCTTCCTGAAACATCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTTTAAGTTCTTTTAGATTGCTAGTCCTTTTCTTCCTGAAACATCA  543

seq1  TCTGTAGAAATGATGAAACTTGATTCTTGTGTTGAATCTATAGCAACCTA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAGAAATGATGAAACTTGATTCTTGTGTTGAATCTATAGCAACCTA  593

seq1  GGATTGTGAAGGAAGATTTTTACCAACTGCAACTATCAGTGTATGCCATA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGTGAAGGAAGATTTTTACCAACTGCAACTATCAGTGTATGCCATA  643

seq1  TACGTATTATTTAAGGAACTGGCATGTTACACTAATATTCAGAGTCTTCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTATTATTTAAGGAACTGGCATGTTACACTAATATTCAGAGTCTTCT  693

seq1  ACACTAATGTAAGAGTGCTACAGTTCAAGTCTCTCAAACACCAAACGTGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTAATGTAAGAGTGCTACAGTTCAAGTCTCTCAAACACCAAACGTGA  743

seq1  TCTTCCTGTACTAGAAGTCAGTGTTTAACAAGATCTAGCAGAACTGAGTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTGTACTAGAAGTCAGTGTTTAACAAGATCTAGCAGAACTGAGTC  793

seq1  TTTAGTGAAAAATCTATGAGAATATCCTTTATACATTACCTTCAGTTAAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTGAAAAATCTATGAGAATATCCTTTATACATTACCTTCAGTTAAA  843

seq1  TCCTGAAAATCATTCCTCACTTCAACGTCTTTGTGAGTAAAACATGAATA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAAAATCATTCCTCACTTCAACGTCTTTGTGAGTAAAACATGAATA  893

seq1  TAATTAAATTCTCTCATAGAAAATTTTTGGTTTTCATAAAACCAGATTTC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAAATTCTCTCATAGAAAATTTTTGGTTTTCATAAAACCAGATTTC  943

seq1  ACAGAATTTGCTGATCTTGTTCCTAATTGACTTGACACATTTTTTCCCTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAATTTGCTGATCTTGTTCCTAATTGACTTGACACATTTTTTCCCTT  993

seq1  GAATGTATCAATGACATTTTAAAATCTTTCAACCTTCACAACATAATATC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTATCAATGACATTTTAAAATCTTTCAACCTTCACAACATAATATC  1043

seq1  TATCATTTCCACTACTTTTCAAACTCAGAAAACTTTGCTTATGCCAGCAT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATTTCCACTACTTTTCAAACTCAGAAAACTTTGCTTATGCCAGCAT  1093

seq1  AATGTTTTCCTCTTGAATTC  1118
      ||||||||||||||||||||
seq2  AATGTTTTCCTCTTGAATTC  1113

seq1: chr5_83436538_83437692
seq2: B6Ng01-166D21.g_65_1204

seq1  GAATTCTGCACTTGCTATAGATATTTGTTATATCCCCTCTATTTATCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCACTTGCTATAGATATTTGTTATATCCCCTCTATTTATCTGA  50

seq1  CTGAAACTGTATTTTCCTTGCAGGTATCTTGTACAAAGCTCAATTATTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAACTGTATTTTCCTTGCAGGTATCTTGTACAAAGCTCAATTATTAA  100

seq1  CACGAGATATTTCACTACTAATGACTCATTTTAAAATTAGATATGAACCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGAGATATTTCACTACTAATGACTCATTTTAAAATTAGATATGAACCT  150

seq1  ATGCTTCTGCACTTAGAATTTAAAAAAAAAAATCTCAGCATCACGTTAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTCTGCACTTAGAATTTAAAAAAAAAAATCTCAGCATCACGTTAAG  200

seq1  TGTTATTACAAAAATAAGTAACCTGTAGATTTTTCTATAGGTCTTTCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATTACAAAAATAAGTAACCTGTAGATTTTTCTATAGGTCTTTCTCC  250

seq1  ACAGATTTAAGTTTCCTTGCCTTAAATCGACAGTATTTTAGTTTTTCATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATTTAAGTTTCCTTGCCTTAAATCGACAGTATTTTAGTTTTTCATC  300

seq1  TCAGAAGCAAGTGTACTTTGAGTAAAGACAGGAGTGTCGACTAAATCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAGCAAGTGTACTTTGAGTAAAGACAGGAGTGTCGACTAAATCTTT  350

seq1  GACTACTTGAGTGTAGGTTATGTTAGTTATTTTAATTTAAAATTGAAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTACTTGAGTGTAGGTTATGTTAGTTATTTTAATTTAAAATTGAAATA  400

seq1  TTTTTATCTAAAAAGTGAGCTGTTATTTTTTTGTTCTATTTAAAAATGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATCTAAAAAGTGAGCTGTTATTTTTTTGTTCTATTTAAAAATGAG  450

seq1  TATCTTACGTAGGTCAAATAGATATGAACTGAATTGATGTATATCACTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTACGTAGGTCAAATAGATATGAACTGAATTGATGTATATCACTTG  500

seq1  CGGGTAAAAGTTTAAAGAGGCAAATACAATTACCAATATATCATCCCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGTAAAAGTTTAAAGAGGCAAATACAATTACCAATATATCATCCCCTT  550

seq1  CATTTGCTGATCACTGGAGCAGATATTAGAGTAATTCCACATTAAAGTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGCTGATCACTGGAGCAGATATTAGAGTAATTCCACATTAAAGTGA  600

seq1  CTAACAGTGTTGCTCTGCCACTCTGAGTGTTCAACCATGGCTAGTGATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACAGTGTTGCTCTGCCACTCTGAGTGTTCAACCATGGCTAGTGATTA  650

seq1  AATTTCTGTTGCCTTAAGCCAGTCACATTTGAAGGATGATTTTAAACATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTGTTGCCTTAAGCCAGTCACATTTGAAGGATGATTTTAAACATT  700

seq1  AATTAATATTGGTAGCTTTTCTTTCTAATAAAATATGTGGTTTTCACTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATATTGGTAGCTTTTCTTTCTAATAAAATATGTGGTTTTCACTAT  750

seq1  TTTGTATCCCAATCAGAAATATATACTTTACCAGGTCCCAGAATTTTGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTATCCCAATCAGAAATATATACTTTACCAGGTCCCAGAATTTTGTT  800

seq1  CATAGATTTATATTAGGTTTATTGTATGAAAATACTTGACATATATTCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGATTTATATTAGGTTTATTGTATGAAAATACTTGACATATATTCTA  850

seq1  TAAATACTTGCTATAGTCATGAATGAATAAATCAATCTTTAGAAATTTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATACTTGCTATAGTCATGAATGAATAAATCAATCTTTAGAAATTTTC  900

seq1  TTCATCATAACAGAAACAATGAAAACATAGAGGGGAGTAAATTTCAATGG  950
      ||||||||||||| ||||||||||||||||||||||||||||||| ||||
seq2  TTCATCATAACAG-AACAATGAAAACATAGAGGGGAGTAAATTTC-ATGG  948

seq1  CTGATCAGGGATTTCGAGAAATTAAACCCAGTTTTTATTGGTCTCTCAAT  1000
      |||||| |||||||||||||||||||||||||||||||||||||||| ||
seq2  CTGATC-GGGATTTCGAGAAATTAAACCCAGTTTTTATTGGTCTCTC-AT  996

seq1  AAAGTAAAAATACATATTTATTGAAAGAGAAAGTGATAATAAACTTGATT  1050
      ||||||||||||||||||||||| ||||||||||||||||||   |||||
seq2  AAAGTAAAAATACATATTTATTG-AAGAGAAAGTGATAATAA--CTGATT  1043

seq1  ATTGTATATATGAATGAAATAAATAACATATGTATTAATTTCTTTAACAT  1100
      |||||   |||| ||||||| |||||||| |||  | ||||| |||||||
seq2  ATTGTTATTATG-ATGAAAT-AATAACATTTGTTATTATTTC-TTAACAT  1090

seq1  AATAAAAAAGCTAGTGGCTAATCATTTATATATGTAAGGTTCCAAATTAT  1150
       || |||| |||||| ||||    |||||||||||||||||| |   |||
seq2  -ATTAAAAGGCTAGT-GCTATCTTTTTATATATGTAAGGTTCGA---TAT  1135

seq1  TTTGA  1155
      |||||
seq2  TTTGA  1140