BAC Information

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BAC

Clone NameB6Ng01-166L04
Chromosome5 (Build37)
Map Location 41,593,349 - 41,728,817
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040502
Downstream geneLOC208522, Rab28, Bapx1, A230054D04Rik, LOC384308, LOC100040588
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-166L04.bB6Ng01-166L04.g
ACCDH958400DH958401
length9691,095
definitionDH958400|Mus musculus domesticus DNA, BAC clone: B6Ng01-166L04, 5' end.DH958401|Mus musculus domesticus DNA, BAC clone: B6Ng01-166L04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,727,848 - 41,728,817)(41,593,349 - 41,594,459)
sequence
gaattctagacattagtaaaatgaaaaataatgattacagtaagtgcagt
ccttagaccagcatcacatgggaatatatgagggattaaacttcttggaa
cctaggctagaactactgaattagaaactcgggttactcccagaaatgta
ttttaattggcccttcaggaacatctgatacacagtgaagtttgaaaatc
cactgtgttatcatgacaatcaatggtatgttcagacagtgtttatttct
tccttccaagactcacaaataaaaatcttatgcatattttaaagtggagg
gatggctgcctattaaatgtagtagataaaagagcacttctgtctctact
cagagagacaaggaaaccacaaagagaaagtgaaacagaaataataaaat
ctaaagtgaaatgactaatatacactaagccctaggaaatgtgggttgga
taaggaaggcattgtcctaatgaacatacactctcatactttaggggaaa
catgggtttctctagattttagtgtgggatttctctagattttagtgtcg
aaggcttggaacaaactgtggatgcataagcctgcagtccacagcatcga
gaaggctaagttaggtgggttgtgagttcaaggtcaaccttgaagactct
gaaaaacaaaagacgatctatctaacaatcatctcactaacacttaagct
gtaggtgtattggagtagcaggtccctatttggcatgggtacaactgttg
tggatagctgtggtgctgtttgtattttgatgctaattcagcttcccaaa
ggggctacctgggacaaggggtaaatcatgtactcagaacttcacgtgac
ccttctaatgaataaagaaaccaatcgctgggctagtaagtgggacttcc
atgttggacaggtgaactgagaggaaggagaaaagactgggctggaggat
gggagatggaagtgatatg
gaattcctggtagccatagtgttataaaatgaaactgcacatgttcataa
attaaattaattcttagtgttttcactctgctcttttagttggtttgggt
tatatatactataattcctgaaatatcataattactaagaatctactcat
taaaaattctatactatgaccagatatgaaggaggacatgttactggcaa
aaggttaggatttgatcccaagttctagaccaacctggtctacagggcaa
gtggcagaccagccagttggggatatgtggtgagacactgtcttaaaagt
aaaaatgaaactgctcctgattccatctataaactcagtgggaactaagg
acactgtgtagaatccgtgttcatgtactgtatataggaaagactgttga
cgtgaaacaggagtttaaaaggattgccttctcaattcacagctacatca
cacatctctaaatattctgaacaacaacaaaaagaaagtttcattttaga
ggatactctgcccagagcaagagaagaacccatgtcaaaggaagcaggga
acacgcaatgagcaggtttctgtgaaatcacaacaaaaggaaaatgagat
tgctagcacagtgttctgcttcattctgtcttaggcagcatagtcgtttc
tgaatagcaacacagagccagtggaatagctatgtttgcataaaagagat
ttaaagtttaggagaaggattattttgagggaaaggggtgtagagaaaaa
gtaaactatgtagctgaggctggcctagaacttgctgtgtagcccagact
gccctcaaactccagatactcctgccttagcctcctgagtgccaagtgtt
aggattataagtgggtgacatgagcccaggctggaagagatattttaaat
taaggcacagtgagttctttcacttatagttttcaagtgagagtcgtaaa
agcatctatagaaaaactccatattgcatggctacgaaaggcatcagagc
tagagcttcatacagtcttgcagaactgaccgagtcagcttgccaggtga
aagtcaggtgattggagtcatcaccgcttcatgacctctactggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_41727848_41728817
seq2: B6Ng01-166L04.b_48_1016 (reverse)

seq1  CATATTCACCTCCATCTCCCATCCTCCAGCCCAGTCTTTTCTCCTTCCTC  50
      |||| |||| ||||||||||||||||||||||||||||||||||||||||
seq2  CATA-TCACTTCCATCTCCCATCCTCCAGCCCAGTCTTTTCTCCTTCCTC  49

seq1  TCGGTTCACCTGTCCAACATGGAAGTCCCACCTACTAGCCCAGCGATTGG  100
      || |||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TCAGTTCACCTGTCCAACATGGAAGTCCCACTTACTAGCCCAGCGATTGG  99

seq1  TTTCTTTATTCATTAGAAGGGTCACGTGAAGTTCTGAGTACATGATTTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTATTCATTAGAAGGGTCACGTGAAGTTCTGAGTACATGATTTAC  149

seq1  CCCTTGTCCCAGGTAGCCCCTTTGGGAAGCTGAATTAGCATCAAAATACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGTCCCAGGTAGCCCCTTTGGGAAGCTGAATTAGCATCAAAATACA  199

seq1  AACAGCACCACAGCTATCCACAACAGTTGTACCCATGCCAAATAGGGACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCACCACAGCTATCCACAACAGTTGTACCCATGCCAAATAGGGACC  249

seq1  TGCTACTCCAATACACCTACAGCTTAAGTGTTAGTGAGATGATTGTTAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACTCCAATACACCTACAGCTTAAGTGTTAGTGAGATGATTGTTAGA  299

seq1  TAGATCGTCTTTTGTTTTTCAGAGTCTTCAAGGTTGACCTTGAACTCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCGTCTTTTGTTTTTCAGAGTCTTCAAGGTTGACCTTGAACTCACA  349

seq1  ACCCACCTAACTTAGCCTTCTCGATGCTGTGGACTGCAGGCTTATGCATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACCTAACTTAGCCTTCTCGATGCTGTGGACTGCAGGCTTATGCATC  399

seq1  CACAGTTTGTTCCAAGCCTTCGACACTAAAATCTAGAGAAATCCCACACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTTTGTTCCAAGCCTTCGACACTAAAATCTAGAGAAATCCCACACT  449

seq1  AAAATCTAGAGAAACCCATGTTTCCCCTAAAGTATGAGAGTGTATGTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTAGAGAAACCCATGTTTCCCCTAAAGTATGAGAGTGTATGTTCA  499

seq1  TTAGGACAATGCCTTCCTTATCCAACCCACATTTCCTAGGGCTTAGTGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGACAATGCCTTCCTTATCCAACCCACATTTCCTAGGGCTTAGTGTA  549

seq1  TATTAGTCATTTCACTTTAGATTTTATTATTTCTGTTTCACTTTCTCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGTCATTTCACTTTAGATTTTATTATTTCTGTTTCACTTTCTCTTT  599

seq1  GTGGTTTCCTTGTCTCTCTGAGTAGAGACAGAAGTGCTCTTTTATCTACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTTCCTTGTCTCTCTGAGTAGAGACAGAAGTGCTCTTTTATCTACT  649

seq1  ACATTTAATAGGCAGCCATCCCTCCACTTTAAAATATGCATAAGATTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTAATAGGCAGCCATCCCTCCACTTTAAAATATGCATAAGATTTTT  699

seq1  ATTTGTGAGTCTTGGAAGGAAGAAATAAACACTGTCTGAACATACCATTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTGAGTCTTGGAAGGAAGAAATAAACACTGTCTGAACATACCATTG  749

seq1  ATTGTCATGATAACACAGTGGATTTTCAAACTTCACTGTGTATCAGATGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCATGATAACACAGTGGATTTTCAAACTTCACTGTGTATCAGATGT  799

seq1  TCCTGAAGGGCCAATTAAAATACATTTCTGGGAGTAACCCGAGTTTCTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAAGGGCCAATTAAAATACATTTCTGGGAGTAACCCGAGTTTCTAA  849

seq1  TTCAGTAGTTCTAGCCTAGGTTCCAAGAAGTTTAATCCCTCATATATTCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTAGTTCTAGCCTAGGTTCCAAGAAGTTTAATCCCTCATATATTCC  899

seq1  CATGTGATGCTGGTCTAAGGACTGCACTTACTGTAATCATTATTTTTCAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGATGCTGGTCTAAGGACTGCACTTACTGTAATCATTATTTTTCAT  949

seq1  TTTACTAATGTCTAGAATTC  970
      ||||||||||||||||||||
seq2  TTTACTAATGTCTAGAATTC  969

seq1: chr5_41593349_41594459
seq2: B6Ng01-166L04.g_66_1160

seq1  GAATTCCTGGTAGCCATAGTGTTATAAAATGAAACTGCACATGTTCATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGTAGCCATAGTGTTATAAAATGAAACTGCACATGTTCATAA  50

seq1  ATTAAATTAATTCTTAGTGTTTTCACTCTGCTCTTTTAGTTGGTTTGGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATTAATTCTTAGTGTTTTCACTCTGCTCTTTTAGTTGGTTTGGGT  100

seq1  TATATATACTATAATTCCTGAAATATCATAATTACTAAGAATCTACTCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATACTATAATTCCTGAAATATCATAATTACTAAGAATCTACTCAT  150

seq1  TAAAAATTCTATACTATGACCAGATATGAAGGAGGACATGTTACTGGCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATTCTATACTATGACCAGATATGAAGGAGGACATGTTACTGGCAA  200

seq1  AAGGTTAGGATTTGATCCCAAGTTCTAGACCAACCTGGTCTACAGGGCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTAGGATTTGATCCCAAGTTCTAGACCAACCTGGTCTACAGGGCAA  250

seq1  GTGGCAGACCAGCCAGTTGGGGATATGTGGTGAGACACTGTCTTAAAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCAGACCAGCCAGTTGGGGATATGTGGTGAGACACTGTCTTAAAAGT  300

seq1  AAAAATGAAACTGCTCCTGATTCCATCTATAAACTCAGTGGGAACTAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGAAACTGCTCCTGATTCCATCTATAAACTCAGTGGGAACTAAGG  350

seq1  ACACTGTGTAGAATCCGTGTTCATGTACTGTATATAGGAAAGACTGTTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGTGTAGAATCCGTGTTCATGTACTGTATATAGGAAAGACTGTTGA  400

seq1  CGTGAAACAGGAGTTTAAAAGGATTGCCTTCTCAATTCACAGCTACATCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGAAACAGGAGTTTAAAAGGATTGCCTTCTCAATTCACAGCTACATCA  450

seq1  CACATCTCTAAATATTCTGAACAACAACAAAAAGAAAGTTTCATTTTAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCTCTAAATATTCTGAACAACAACAAAAAGAAAGTTTCATTTTAGA  500

seq1  GGATACTCTGCCCAGAGCAAGAGAAGAACCCATGTCAAAGGAAGCAGGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATACTCTGCCCAGAGCAAGAGAAGAACCCATGTCAAAGGAAGCAGGGA  550

seq1  ACACGCAATGAGCAGGTTTCTGTGAAATCACAACAAAAGGAAAATGAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGCAATGAGCAGGTTTCTGTGAAATCACAACAAAAGGAAAATGAGAT  600

seq1  TGCTAGCACAGTGTTCTGCTTCATTCTGTCTTAGGCAGCATAGTCGTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGCACAGTGTTCTGCTTCATTCTGTCTTAGGCAGCATAGTCGTTTC  650

seq1  TGAATAGCAACACAGAGCCAGTGGAATAGCTATGTTTGCATAAAAGAGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAGCAACACAGAGCCAGTGGAATAGCTATGTTTGCATAAAAGAGAT  700

seq1  TTAAAGTTTAGGAGAAGGATTATTTTGAGGGAAAGGGGTGTAGAGAAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGTTTAGGAGAAGGATTATTTTGAGGGAAAGGGGTGTAGAGAAAAA  750

seq1  GTAAACTATGTAGCTGAGGCTGGCCTAGAACTTGCTGTGTAGCCCAGACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACTATGTAGCTGAGGCTGGCCTAGAACTTGCTGTGTAGCCCAGACT  800

seq1  GCCCTCAAACTCCAGATACTCCTGCCTTAGCCTCCTGAGTGCCAAGTGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCAAACTCCAGATACTCCTGCCTTAGCCTCCTGAGTGCCAAGTGTT  850

seq1  AGGATTATAAGTGGGTGACATGAGCCCAGGCTGGAAAGAGAATATTTTAA  900
      |||||||||||||||||||||||||||||||||| ||||| |||||||||
seq2  AGGATTATAAGTGGGTGACATGAGCCCAGGCTGG-AAGAG-ATATTTTAA  898

seq1  ATTAAGGCACAGTGAGTTCTTTCACTTATTAGTTTTCAAGTGAAGAGTCG  950
      |||||||||||||||||||||||||||| ||||||||||||| |||||||
seq2  ATTAAGGCACAGTGAGTTCTTTCACTTA-TAGTTTTCAAGTG-AGAGTCG  946

seq1  TAAAAGCATCTTATTAGAAAAACTCCATATTGCATTGGCTAACGAAAGGC  1000
      |||||||||||   |||||||||||||||||||| ||||| |||||||||
seq2  TAAAAGCATCT--ATAGAAAAACTCCATATTGCA-TGGCT-ACGAAAGGC  992

seq1  ATTCAAGAGCCAAGAGCTCCATACAGCCTTGCAGAACTGACCCGAGTCAG  1050
      ||   |||| | |||||| ||||||| ||||||||||||| |||||||||
seq2  AT--CAGAG-CTAGAGCTTCATACAGTCTTGCAGAACTGA-CCGAGTCAG  1038

seq1  CTTGCAGAGTGAAAAGTCAGGGTGAATTGGAGCCATCAACGCTTCATGAC  1100
      |||||   ||| ||||||| |||| ||||||| ||||| |||||||||||
seq2  CTTGCCAGGTG-AAAGTCA-GGTG-ATTGGAGTCATCACCGCTTCATGAC  1085

seq1  TCTAAACTGGC  1111
       ||  ||||||
seq2  -CTCTACTGGC  1095