BAC Information

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BAC

Clone NameB6Ng01-166O01
Chromosome5 (Build37)
Map Location 135,299,106 - 135,428,862
singlet/doubletdoublet
Overlap geneWbscr28, Cldn13, Wbscr27, Cldn4
Upstream geneLOC666038, LOC100039750, Gats, Wbscr16, Gtf2ird2, Ncf1, Gtf2i, LOC630424, Gtf2ird1, LOC100039820, Clip2, EG666071, Gm52, Rfc2, Lat2, Eif4h, LOC638081, Limk1, Eln
Downstream geneCldn3, Abhd11, Stx1a, Wbscr22, Wbscr18, Vps37d, Mlxipl, Tbl2, Bcl7b, LOC100040069, Baz1b, Fzd9, Fkbp6, Trim50, Nsun5, Pom121, Hip1, Ccl26l, Ccl24, Rhbdd2, Por, 2010310D06Rik, Styxl1, Mdh2, 2900083I11Rik, Hspb1, Ywhag
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-166O01.bB6Ng01-166O01.g
ACCDH958526DH958527
length1,078134
definitionDH958526|Mus musculus domesticus DNA, BAC clone: B6Ng01-166O01, 5' end.DH958527|Mus musculus domesticus DNA, BAC clone: B6Ng01-166O01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(135,299,106 - 135,299,755)(135,428,729 - 135,428,862)
sequence
gaattctttggatttttcttttaagctccgtaaccggcttagagagcgcg
cctgggtatgattaaaacctcgcgtagactgattcatctcagaaaaaatg
tgcaaaacaatgtttgttgtattaagaaaaatattcaatttcaatattaa
atgttaagcctgcatctctgagctctaagtcaacctttcttttccttggg
gtgctaaaagtttaatatcttcatctgttgtgtggtcttggtgagaaacc
taaatcccaagacattttgtgtctttgatcatcaaatatctagcaattct
ctcttaatgcaagaaaaatcctgagtggcagtgaacagctccagaactct
ctgtaacactctacaactcatccagatgcatccgcaaaggacagggactc
attagagccatggttttatttccctgtggcttaaactattttttttttca
gattaggctaaacatttctttgacagatataaaagatgaatacatgtgtc
tatttactcatataattaatggttaaatttttaggcaacaaattgatttt
taatttttttaaaagatgtattttattcatatgagtacactgtcactgtc
ttcagacacactagacgagaacattggatcccattacggatggtcatgag
ccgccatgtggttgctgggaattgaaggcaggacctctggaagagcagcc
agtgctcttaaccactgagccatctctccagcccgattttttaattgttt
actatggaagtaatttgacacaaaatgtgacaaaaggattaattgactgc
agccagaaatatagctcagtagtagaggccctgcctagaatcccccaggg
aggggctgggggcgtggctcagtggtagagcatttgtctatcatgtacaa
gccacatttcaattctaataccaccaaagtactagttatatatttaaagt
tttgctcatataatttacaactttagtataatagtatttataataaaatt
tgagctgcagagatggtttagagatggataaaaaagtacttgctaccaga
actgatgctcttgagttcaatcctggaa
accaggagtctcatgttgaaggaagaaaaaggctgaagcctggcgccagc
cagaggggaagtttgcctcccctggaaagttgtcacaaggtgttgacaac
tttcagttgagaggatgatgggtgggtgatggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_135299106_135299755
seq2: B6Ng01-166O01.b_476_1122

seq1  TAAACTATTTTTTTTTTCAGATTAGGCTAAACATTTCTTTGACAGATATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTATTTTTTTTTTCAGATTAGGCTAAACATTTCTTTGACAGATATA  50

seq1  AAAGATGAATACATGTGTCTATTTACTCATATAATTAATGGTTAAATTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATGAATACATGTGTCTATTTACTCATATAATTAATGGTTAAATTTT  100

seq1  TAGGCAACAAATTGATTTTTAATTTTTTTAAAAGATGTATTTTATTCATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCAACAAATTGATTTTTAATTTTTTTAAAAGATGTATTTTATTCATA  150

seq1  TGAGTACACTGTCACTGTCTTCAGACACACTAGACGAGAACATTGGATCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTACACTGTCACTGTCTTCAGACACACTAGACGAGAACATTGGATCC  200

seq1  CATTACGGATGGTCATGAGCCGCCATGTGGTTGCTGGGAATTGAAGGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACGGATGGTCATGAGCCGCCATGTGGTTGCTGGGAATTGAAGGCAG  250

seq1  GACCTCTGGAAGAGCAGCCAGTGCTCTTAACCACTGAGCCATCTCTCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCTGGAAGAGCAGCCAGTGCTCTTAACCACTGAGCCATCTCTCCAG  300

seq1  CCCGATTTTTTAATTGTTTACTATGGAAGTAATTTGACACAAAATGTGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGATTTTTTAATTGTTTACTATGGAAGTAATTTGACACAAAATGTGAC  350

seq1  AAAAGGATTAATTGACTGCAGCCAGAAATATAGCTCAGTAGTAGAGGCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGATTAATTGACTGCAGCCAGAAATATAGCTCAGTAGTAGAGGCCC  400

seq1  TGCCTAGAATCCCCCAGGGAGGGGCTGGGGGCGTGGCTCAGTGGTAGAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTAGAATCCCCCAGGGAGGGGCTGGGGGCGTGGCTCAGTGGTAGAGC  450

seq1  ATTTGTCTATCATGTACAAGGCCCACATTTCAATTCTAATACCACCAAAG  500
      ||||||||||||||||||||  ||||||||||||||||||||||||||||
seq2  ATTTGTCTATCATGTACAAG--CCACATTTCAATTCTAATACCACCAAAG  498

seq1  TACTAGTTATATATTTAAAGTTTTGCTCATATAATTTACAACTTTAGTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TACTAGTTATATATTTAAAGTTTTGCTCATATAATTTACAACTTTAG-TA  547

seq1  TAATAGTATTTATAATTAAAATTTGAGCTGCAGAGATGGTTCAGAGATGG  600
      ||||||||||||||| ||||||||||||||||||||||||| ||||||||
seq2  TAATAGTATTTATAA-TAAAATTTGAGCTGCAGAGATGGTTTAGAGATGG  596

seq1  AT-AAAAAGTACTTGCTACCAAGACTGATGCTC-TGAGTTCAATCCCTGG  648
      || ||||||||||||||||||  |||||||||| |||||||||| |||||
seq2  ATAAAAAAGTACTTGCTACCAGAACTGATGCTCTTGAGTTCAAT-CCTGG  645

seq1  AA  650
      ||
seq2  AA  647

seq1: chr5_135428729_135428862
seq2: B6Ng01-166O01.g_74_207 (reverse)

seq1  CACCATCACCCACCCATCATCCTCTCAACTGAAAGTTGTCAACACCTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATCACCCACCCATCATCCTCTCAACTGAAAGTTGTCAACACCTTGT  50

seq1  GACAACTTTCCAGGGGAGGCAAACTTCCCCTCTGGCTGGCGCCAGGCTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACTTTCCAGGGGAGGCAAACTTCCCCTCTGGCTGGCGCCAGGCTTC  100

seq1  AGCCTTTTTCTTCCTTCAACATGAGACTCCTGGT  134
      ||||||||||||||||||||||||||||||||||
seq2  AGCCTTTTTCTTCCTTCAACATGAGACTCCTGGT  134