BAC Information

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BAC

Clone NameB6Ng01-167F19
Chromosome5 (Build37)
Map Location 78,204,485 - 78,205,664
singlet/doubletsinglet
Overlap genenone
Upstream geneC530008M17Rik, A230062G08Rik, Ppat, LOC664998, Paics, Srp72, Arl9, 1700023E05Rik, Hod, Spink2, Rest, 2610024G14Rik, Polr2b, Igfbp7, Pea15b, LOC669227
Downstream geneLOC100039398, Mthfr-ps1, EG384187
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-167F19.bB6Ng01-167F19.g
ACCDH958882DH958883
length1,1741,160
definitionDH958882|Mus musculus domesticus DNA, BAC clone: B6Ng01-167F19, 5' end.DH958883|Mus musculus domesticus DNA, BAC clone: B6Ng01-167F19, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcacaacgagcttctgaccactccacaaccagtccctgctccttca
ttcagttcaatgcaagcctcaaacaacctgaaactccttatacaattcct
gtctccttaggctgcacagcactggctcaagtcctcatagtggagactca
tagcagactcatagcatcaccatgatttagacagggccaccaaaaaggag
gttcactggtaagtggagctaactgcttctcctttggttaaggaagcagt
tgtgaatatcaaacttcacagctataggagatgaaatttgagttacagat
ctgaagccataaacctccaggagccacgcatggttcttcatcctttttgt
cttctcttcctcctcttcttccttgtcctcctcctccttgccctcctcct
cctccttctccttcctctccttcatactggctgccattttcaaggcccca
caaaggaaaggctatgatcacaaagcattattcggtgatcactaatacac
tggaaaataaatactgtaggtaactaaaagttaagtcattctatacacta
ccaaaccttccagaccaatgtctttcacctgccaaattaactgactacac
tgggaacttcggaatcaggtggctatcagcatagcctgctgcccagaaga
cagtattagacatcattgttctatacaggagtggcctatgtctttacata
gtgaacactgaaattcagttagtggaagaaagccagaggccgtgactagt
ttgtctatatctatacgaggttaaagctccaaacttaatgattgaatagt
gactggtaaaagtgagaacttatcatgcagcaggaagagatccctgagcc
agcctacctggctttcctcttcctgccacataaagggattctacccctaa
tgtttgagtaaacagaagtgatgcctgtcattctcagacaacacatttca
ttaaaggtatgaactcttcacagcgcggccccaatccaatcgtgcggaac
ctgagactgcgttcatagggaagcagactacccgggcctgacttgggcac
aagcccctttcgctcactcaagccctggcttagcttgcagcagagtcgct
gaacacccgccaaggtcccacacatgaattccacaaggatcctagaacct
ctaggagtggaaccaactttctgc
gaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaacaggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctaagtgaggtaacacattcacaaa
gaaactcacacaatatgtattcactgataagtggatattagccccaaacc
taggatacccaagatataagatataatttgctaaacacatgaaactcaag
gagaatgaagactgaagtgtggacactatgcccctccttagatttgggaa
caaaacacccatggaaggagttacagagacggagtttggagctgagatga
aaggatggaccatgtagagactgccatagccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttattgaaa
aggacgcagatgtagctgtctcttgtgagactatgcccggggcccagcaa
acacagaagtggatgctcacagtcagctaatggatggatcatagggctcc
catggagagctagagaaagtagccaaggagctaaaggatctgcaacccta
taggtggaacaacatatgagctaacagtactccggagctctgactcttag
ctgcaatgatcaaagatggctagtcgccatcactggaagagagtccaatg
gactgcaactttatatctagtactggataccaggcaaggggggatgtgtg
ggccaggata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_78204485_78205664
seq2: B6Ng01-167F19.b_49_1222 (reverse)

seq1  GCAG-AAGTTGTGTTCCACTCACTAGAGGTCTTAGGATCCCTTGTGGAA-  48
      |||| |||||| ||||||||| ||||||||  |||||| |||||||||| 
seq2  GCAGAAAGTTG-GTTCCACTC-CTAGAGGTTCTAGGAT-CCTTGTGGAAT  47

seq1  TCCTGTGTGGGCCCTT-GCGGGTGTCAGGCGACTCTGCTGGCAAGCTAGC  97
      || |||||||| |||| ||||||||   ||||||||||| ||||||||  
seq2  TCATGTGTGGGACCTTGGCGGGTGTTCAGCGACTCTGCT-GCAAGCTAAG  96

seq1  CCAGGGCTCGAGTGGAGCGGAAGGGGCTTGTGCCCCAGGTCAGGCCCGGG  147
      |||||||| |||| ||||| |||||||||||| |||| ||||||||||||
seq2  CCAGGGCTTGAGT-GAGCGAAAGGGGCTTGTG-CCCAAGTCAGGCCCGGG  144

seq1  TAGTCTGCTTCCCTATGAACCGCAGTCTCAGGTTCCGCACGATTGGATTG  197
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TAGTCTGCTTCCCTATGAA-CGCAGTCTCAGGTTCCGCACGATTGGATTG  193

seq1  GGGCCGGCGCTGTGAAGAGTTCATACCTTTAATGAAATGTGTTGTCCTGA  247
      ||||| ||||||||||||||||||||||||||||||||||||||| ||||
seq2  GGGCC-GCGCTGTGAAGAGTTCATACCTTTAATGAAATGTGTTGT-CTGA  241

seq1  GAATGACAGGCATCACTTCTGTTTACTCAAACATTAGGGGTAGAATCCCT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGACAGGCATCACTTCTGTTTACTCAAACATTAGGGGTAGAATCCCT  291

seq1  TTATGTGGCAGGAAGAGGAAAGCCAGGTAGGCTGGCTCAGGGATCTCTTC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTGGCAGGAAGAGGAAAGCCAGGTAGGCTGGCTCAGGGATCTCTTC  341

seq1  CTGCTGCATGATAAGTTCTCACTTTTACCAGTCACTATTCAATCATTAAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGCATGATAAGTTCTCACTTTTACCAGTCACTATTCAATCATTAAG  391

seq1  TTTGGAGCTTTAACCTCGTATAGATATAGACAAACTAGTCACGGCCTCTG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAGCTTTAACCTCGTATAGATATAGACAAACTAGTCACGGCCTCTG  441

seq1  GCTTTCTTCCACTAACTGAATTTCAGTGTTCACTATGTAAAGACATAGGC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCTTCCACTAACTGAATTTCAGTGTTCACTATGTAAAGACATAGGC  491

seq1  CACTCCTGTATAGAACAATGATGTCTAATACTGTCTTCTGGGCAGCAGGC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCTGTATAGAACAATGATGTCTAATACTGTCTTCTGGGCAGCAGGC  541

seq1  TATGCTGATAGCCACCTGATTCCGAAGTTCCCAGTGTAGTCAGTTAATTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTGATAGCCACCTGATTCCGAAGTTCCCAGTGTAGTCAGTTAATTT  591

seq1  GGCAGGTGAAAGACATTGGTCTGGAAGGTTTGGTAGTGTATAGAATGACT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGTGAAAGACATTGGTCTGGAAGGTTTGGTAGTGTATAGAATGACT  641

seq1  TAACTTTTAGTTACCTACAGTATTTATTTTCCAGTGTATTAGTGATCACC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTTTAGTTACCTACAGTATTTATTTTCCAGTGTATTAGTGATCACC  691

seq1  GAATAATGCTTTGTGATCATAGCCTTTCCTTTGTGGGGCCTTGAAAATGG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAATGCTTTGTGATCATAGCCTTTCCTTTGTGGGGCCTTGAAAATGG  741

seq1  CAGCCAGTATGAAGGAGAGGAAGGAGAAGGAGGAGGAGGAGGGCAAGGAG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGTATGAAGGAGAGGAAGGAGAAGGAGGAGGAGGAGGGCAAGGAG  791

seq1  GAGGAGGACAAGGAAGAAGAGGAGGAAGAGAAGACAAAAAGGATGAAGAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGGACAAGGAAGAAGAGGAGGAAGAGAAGACAAAAAGGATGAAGAA  841

seq1  CCATGCGTGGCTCCTGGAGGTTTATGGCTTCAGATCTGTAACTCAAATTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCGTGGCTCCTGGAGGTTTATGGCTTCAGATCTGTAACTCAAATTT  891

seq1  CATCTCCTATAGCTGTGAAGTTTGATATTCACAACTGCTTCCTTAACCAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCCTATAGCTGTGAAGTTTGATATTCACAACTGCTTCCTTAACCAA  941

seq1  AGGAGAAGCAGTTAGCTCCACTTACCAGTGAACCTCCTTTTTGGTGGCCC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAAGCAGTTAGCTCCACTTACCAGTGAACCTCCTTTTTGGTGGCCC  991

seq1  TGTCTAAATCATGGTGATGCTATGAGTCTGCTATGAGTCTCCACTATGAG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTAAATCATGGTGATGCTATGAGTCTGCTATGAGTCTCCACTATGAG  1041

seq1  GACTTGAGCCAGTGCTGTGCAGCCTAAGGAGACAGGAATTGTATAAGGAG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGAGCCAGTGCTGTGCAGCCTAAGGAGACAGGAATTGTATAAGGAG  1091

seq1  TTTCAGGTTGTTTGAGGCTTGCATTGAACTGAATGAAGGAGCAGGGACTG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGGTTGTTTGAGGCTTGCATTGAACTGAATGAAGGAGCAGGGACTG  1141

seq1  GTTGTGGAGTGGTCAGAAGCTCGTTGTGAATTC  1180
      |||||||||||||||||||||||||||||||||
seq2  GTTGTGGAGTGGTCAGAAGCTCGTTGTGAATTC  1174