BAC Information

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BAC

Clone NameB6Ng01-167I15
Chromosome5 (Build37)
Map Location 43,253,832 - 43,375,029
singlet/doubletdoublet
Overlap geneLOC433883
Upstream geneLOC100040588, EG636612
Downstream geneEG665934, Cpeb2, C1qtnf7, 4833430A08Rik, 5730509K17Rik, Fbxl5, Bst1, Cd38, EG665989, EG665994, LOC100040677, EG384179, Fgfbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-167I15.bB6Ng01-167I15.g
ACCDH959004DH959005
length1,2521,112
definitionDH959004|Mus musculus domesticus DNA, BAC clone: B6Ng01-167I15, 5' end.DH959005|Mus musculus domesticus DNA, BAC clone: B6Ng01-167I15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,373,777 - 43,375,029)(43,253,832 - 43,254,959)
sequence
gaattcctagaacctcctgggatagatggccaggcataggtgcagtaaaa
caacaaagagagcctgactcaaaataagctgaaggtaaaagctgttgtct
gatctctgtgtatgtactggcattcataggaatgcacacaggaatacaca
tgcatatacataagcacatcccacatgacaaatgactaaaaataaaaaaa
atccatgaatttataattaatacaagaaaatggatgaaatgaactccata
ctgttacaaatattattgatacaagcaaatgtatctaacatagtgaatac
attctaaaaacaatgttatgtgcctttttttggttttgtttctcttaata
tactttgtggatacttttgtagatactttgtggatacttcagtacacatg
actccattatattattgcaggatattctttataatgttccattatattta
actattcagatatactataacgtttgtatcattaaacatagattatttgc
aatttggaagattttataaaaaaaaaaccttttatttatttttattttat
gtatacgagtatttgttgcatgcatgcatgtgccccatatgcattcctgg
tgcctgggaggccagaagaagtttcaggtcccatggaactgaagttatag
atggttgtaagccaccatgcatgtgctgggtgtcaaacatgctctctaca
agagcagaatgccctcttaactgctaagccatctctctggccctcttatt
tgcaacattttatttttccttccccaatccacaattagtaccctcgactt
tgcattgttgaatgcatgtgtgggtaaatcaactgaagaacaatctctgg
agtggaaattctgagttaaaagtattttcatggatattgaccttttgcca
aattgaccttcaaagaagttacgccaatttatagcccaatcactagtgtg
tgaatatctgtttcccacaaatcttgccaaagccatattttgtaattcct
tttaatcattgccaatctgataggcaaaataaaaatatcctgctgtttaa
tttgcactattaaagcaataagcaaagttagaaaatctttctattaagtc
tttgccaggttaatatcatttttctttttctggaacaaatacttaatagt
accacaaaaaaattttttggccaattatatacaccaaccccgggcattgg
tcgttattaactcaatgaattcattataaggtaacaactattaactcttg
gt
gaattccatcttgtgccaagctcaggggaagctgtccagacctggtaggc
ttcaaccataagtagcatggtttcccagcagctaattaacctggacaaag
taaagagctccaaagctagtgacagtatctgtctcaaaaatagggtggag
tagaattgaagaaattacctaaggcctagtgtacatacacatgcacacat
gtgtgcacaaccctggatgttcttgtacatgggcatacaaacacagggag
gttaatgttagctctctatcaaaatagcttagcatttaaatatgacagac
taaatgaagtgtaagttcttacatctggtgttccaggttttctaccatca
gacttcagcttagattttcagcttgatgaccatcctttgttttaatgaat
gttataatttatctaaacaagcagacactactggaaatctggattttaag
aatttgccagactttccttctccagtctattagaactttatcattaaaac
tccacaactgaatgtcacctactctgccaaatcttttcccactaccatta
cagcagtgactctaccccattctgtatttcaacagaaagacctgttggcc
attaatattctggagcattcttcacaaggtacaatcattacactattcat
tgcacagcatattttaattaagaaaatgaccagtaataaactgaccatcc
ccttatccacttaattaaactgaattctctatgaaggttttatctgcaac
atagtgcaaacatcctacagagagatactttaaaataaaggaatctttaa
agcagctcatgaatattaaaatgagaagttttgctattataaatacaaat
gtatctgtataggactagttaaaattactatttcaagttgtaagatagag
agtcagatggcagcatctaaaggaagaaaagacttccagtaacctggagc
agaggactgagactagaggggtggttttaagtcctgtaaggcctttccac
taattacttgttcatacttctgaaccatccccactctcatgttcagtctt
aatgacacctgttccacctcctgatggttgataaaggagtgggaaaacct
gctgttgatttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_43373777_43375029
seq2: B6Ng01-167I15.b_47_1298 (reverse)

seq1  ACCAAGA-TTATTAATTTGTTACTTTATAATGAATTCATTGAGATTAATA  49
      ||||||| ||| | | ||||||| ||||||||||||||||||| ||||| 
seq2  ACCAAGAGTTAAT-AGTTGTTACCTTATAATGAATTCATTGAG-TTAAT-  47

seq1  AAAGGAACAATAGCACAGGTT-GTGTATATAATTGCCCAAAAATATTTAT  98
       || || ||||  |   |||| ||||||||||||| |||||||  ||| |
seq2  -AACGACCAATGCCCGGGGTTGGTGTATATAATTGGCCAAAAAATTTTTT  96

seq1  TGTGTACCTATTAAGTATTTGTT-CAGAAAAAGAAAAATGATA-TAACTT  146
      ||||   |||||||||||||||| ||||||||||||||||||| |||| |
seq2  TGTGGTACTATTAAGTATTTGTTCCAGAAAAAGAAAAATGATATTAACCT  146

seq1  GCAAAGGACTACATAGAAAGA-TGTCTAACTTTGCTTATTGCTTTAATAA  195
      |  || ||||  ||||||||| | |||||||||||||||||||||||| |
seq2  GGCAAAGACTTAATAGAAAGATTTTCTAACTTTGCTTATTGCTTTAAT-A  195

seq1  GTGCAAATTAAAACAGCAGGATATTTTTATTTTGCCTATCAGATTGGCAA  245
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAAATT-AAACAGCAGGATATTTTTATTTTGCCTATCAGATTGGCAA  244

seq1  TGATTAAAAGGAATTACAAAATATGGCTTTGGCAAGATTTGTGGGAAACA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTAAAAGGAATTACAAAATATGGCTTTGGCAAGATTTGTGGGAAACA  294

seq1  GATATTCACACACTAGTGATTGGGCTATAAATTGGCGTAACTTCTTTGAA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTCACACACTAGTGATTGGGCTATAAATTGGCGTAACTTCTTTGAA  344

seq1  GGTCAATTTGGCAAAAGGTCAATATCCATGAAAATACTTTTAACTCAGAA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAATTTGGCAAAAGGTCAATATCCATGAAAATACTTTTAACTCAGAA  394

seq1  TTTCCACTCCAGAGATTGTTCTTCAGTTGATTTACCCACACATGCATTCA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCACTCCAGAGATTGTTCTTCAGTTGATTTACCCACACATGCATTCA  444

seq1  ACAATGCAAAGTCGAGGGTACTAATTGTGGATTGGGGAAGGAAAAATAAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGCAAAGTCGAGGGTACTAATTGTGGATTGGGGAAGGAAAAATAAA  494

seq1  ATGTTGCAAATAAGAGGGCCAGAGAGATGGCTTAGCAGTTAAGAGGGCAT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGCAAATAAGAGGGCCAGAGAGATGGCTTAGCAGTTAAGAGGGCAT  544

seq1  TCTGCTCTTGTAGAGAGCATGTTTGACACCCAGCACATGCATGGTGGCTT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTCTTGTAGAGAGCATGTTTGACACCCAGCACATGCATGGTGGCTT  594

seq1  ACAACCATCTATAACTTCAGTTCCATGGGACCTGAAACTTCTTCTGGCCT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCATCTATAACTTCAGTTCCATGGGACCTGAAACTTCTTCTGGCCT  644

seq1  CCCAGGCACCAGGAATGCATATGGGGCACATGCATGCATGCAACAAATAC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGCACCAGGAATGCATATGGGGCACATGCATGCATGCAACAAATAC  694

seq1  TCGTATACATAAAATAAAAATAAATAAAAGGTTTTTTTTTTATAAAATCT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTATACATAAAATAAAAATAAATAAAAGGTTTTTTTTTTATAAAATCT  744

seq1  TCCAAATTGCAAATAATCTATGTTTAATGATACAAACGTTATAGTATATC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAATTGCAAATAATCTATGTTTAATGATACAAACGTTATAGTATATC  794

seq1  TGAATAGTTAAATATAATGGAACATTATAAAGAATATCCTGCAATAATAT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAGTTAAATATAATGGAACATTATAAAGAATATCCTGCAATAATAT  844

seq1  AATGGAGTCATGTGTACTGAAGTATCCACAAAGTATCTACAAAAGTATCC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAGTCATGTGTACTGAAGTATCCACAAAGTATCTACAAAAGTATCC  894

seq1  ACAAAGTATATTAAGAGAAACAAAACCAAAAAAAGGCACATAACATTGTT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGTATATTAAGAGAAACAAAACCAAAAAAAGGCACATAACATTGTT  944

seq1  TTTAGAATGTATTCACTATGTTAGATACATTTGCTTGTATCAATAATATT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAATGTATTCACTATGTTAGATACATTTGCTTGTATCAATAATATT  994

seq1  TGTAACAGTATGGAGTTCATTTCATCCATTTTCTTGTATTAATTATAAAT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACAGTATGGAGTTCATTTCATCCATTTTCTTGTATTAATTATAAAT  1044

seq1  TCATGGATTTTTTTTATTTTTAGTCATTTGTCATGTGGGATGTGCTTATG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGATTTTTTTTATTTTTAGTCATTTGTCATGTGGGATGTGCTTATG  1094

seq1  TATATGCATGTGTATTCCTGTGTGCATTCCTATGAATGCCAGTACATACA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGCATGTGTATTCCTGTGTGCATTCCTATGAATGCCAGTACATACA  1144

seq1  CAGAGATCAGACAACAGCTTTTACCTTCAGCTTATTTTGAGTCAGGCTCT  1195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGATCAGACAACAGCTTTTACCTTCAGCTTATTTTGAGTCAGGCTCT  1194

seq1  CTTTGTTGTTTTACTGCACCTATGCCTGGCCATCTATCCCAGGAGGTTCT  1245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTGTTTTACTGCACCTATGCCTGGCCATCTATCCCAGGAGGTTCT  1244

seq1  AGGAATTC  1253
      ||||||||
seq2  AGGAATTC  1252

seq1: chr5_43253832_43254959
seq2: B6Ng01-167I15.g_67_1178

seq1  GAATTCCATCTTGTGCCAAGCTCAGGGGAAGCTGTCCAGACCTGGTAGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCTTGTGCCAAGCTCAGGGGAAGCTGTCCAGACCTGGTAGGC  50

seq1  TTCAACCATAAGTAGCATGGTTTCCCAGCAGCTAATTAACCTGGACAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACCATAAGTAGCATGGTTTCCCAGCAGCTAATTAACCTGGACAAAG  100

seq1  TAAAGAGCTCCAAAGCTAGTGACAGTATCTGTCTCAAAAATAGGGTGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAGCTCCAAAGCTAGTGACAGTATCTGTCTCAAAAATAGGGTGGAG  150

seq1  TAGAATTGAAGAAATTACCTAAGGCCTAGTGTACATACACATGCACACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATTGAAGAAATTACCTAAGGCCTAGTGTACATACACATGCACACAT  200

seq1  GTGTGCACAACCCTGGATGTTCTTGTACATGGGCATACAAACACAGGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCACAACCCTGGATGTTCTTGTACATGGGCATACAAACACAGGGAG  250

seq1  GTTAATGTTAGCTCTCTATCAAAATAGCTTAGCATTTAAATATGACAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATGTTAGCTCTCTATCAAAATAGCTTAGCATTTAAATATGACAGAC  300

seq1  TAAATGAAGTGTAAGTTCTTACATCTGGTGTTCCAGGTTTTCTACCATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGAAGTGTAAGTTCTTACATCTGGTGTTCCAGGTTTTCTACCATCA  350

seq1  GACTTCAGCTTAGATTTTCAGCTTGATGACCATCCTTTGTTTTAATGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCAGCTTAGATTTTCAGCTTGATGACCATCCTTTGTTTTAATGAAT  400

seq1  GTTATAATTTATCTAAACAAGCAGACACTACTGGAAATCTGGATTTTAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATAATTTATCTAAACAAGCAGACACTACTGGAAATCTGGATTTTAAG  450

seq1  AATTTGCCAGACTTTCCTTCTCCAGTCTATTAGAACTTTATCATTAAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGCCAGACTTTCCTTCTCCAGTCTATTAGAACTTTATCATTAAAAC  500

seq1  TCCACAACTGAATGTCACCTACTCTGCCAAATCTTTTCCCACTACCATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAACTGAATGTCACCTACTCTGCCAAATCTTTTCCCACTACCATTA  550

seq1  CAGCAGTGACTCTACCCCATTCTGTATTTCAACAGAAAGACCTGTTGGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGTGACTCTACCCCATTCTGTATTTCAACAGAAAGACCTGTTGGCC  600

seq1  ATTAATATTCTGGAGCATTCTTCACAAGGTACAATCATTACACTATTCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATATTCTGGAGCATTCTTCACAAGGTACAATCATTACACTATTCAT  650

seq1  TGCACAGCATATTTTAATTAAGAAAATGACCAGTAATAAACTGACCATCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAGCATATTTTAATTAAGAAAATGACCAGTAATAAACTGACCATCC  700

seq1  CCTTATCCACTTAATTAAACTGAATTCTCTATGAAGGTTTTATCTGCAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATCCACTTAATTAAACTGAATTCTCTATGAAGGTTTTATCTGCAAC  750

seq1  ATAGTGCAAACATCCTACAGAGAGATACTTTAAAATAAAGGAATCTTTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGCAAACATCCTACAGAGAGATACTTTAAAATAAAGGAATCTTTAA  800

seq1  AGCAGCTCATGAATATTAAAATGAGAAGTTTTGCTATTATAAATACAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCTCATGAATATTAAAATGAGAAGTTTTGCTATTATAAATACAAAT  850

seq1  GTATCTGTATAGGACTAGTTAAAATTACTATTTCAAGTTGTAAGAATAGA  900
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GTATCTGTATAGGACTAGTTAAAATTACTATTTCAAGTTGTAAG-ATAGA  899

seq1  GAGTCAGAATGGCAGCATCTAAAGGAAGAAAAGACTTCCAGTAACCTGGA  950
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAG-ATGGCAGCATCTAAAGGAAGAAAAGACTTCCAGTAACCTGGA  948

seq1  GCAGAGGACTGAGAACTAGGAGGTGGTGGTTTTAAGTCCCTGTAAGGCCC  1000
      ||||||||||||| |||| |||| ||||||||||||| ||||||||| ||
seq2  GCAGAGGACTGAG-ACTA-GAGG-GGTGGTTTTAAGT-CCTGTAAGG-CC  993

seq1  TTTCCACTTAATTACTTTGTTTCTATAACTCTGAACACATCCCCACTCTC  1050
      ||||||| ||||||| |||||   |||  ||||||| |||||||||||||
seq2  TTTCCAC-TAATTAC-TTGTT--CATACTTCTGAAC-CATCCCCACTCTC  1038

seq1  ATGTTCAAGTCTTAATAGACA-CTGTTCAACTACATGATGG-TGATAAAA  1098
      |||||| ||||||||| |||| |||||| ||  | |||||| |||| |||
seq2  ATGTTC-AGTCTTAAT-GACACCTGTTCCACCTCCTGATGGTTGAT-AAA  1085

seq1  GGAGTTGAGAAACACCTGCTGGTTGATTTC  1128
      |||| || |||| ||||||| |||||||||
seq2  GGAG-TGGGAAA-ACCTGCT-GTTGATTTC  1112