BAC Information

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BAC

Clone NameB6Ng01-167I21
Chromosome5 (Build37)
Map Location 145,014,587 - 145,112,821
singlet/doubletdoublet
Overlap geneBri3, Baiap2l1
Upstream geneZfp316, Gm792, E130309D02Rik, Zdhhc4, Grid2ip, Kdelr2, LOC231869, LOC670671, Daglb, Rac1, 2810453I06Rik, Pscd3, Usp42, Eif2ak1, 4921520G13Rik, Jtv1, Pms2, 4930526H21Rik, AU022870, Ocm, Lmtk2, Bhlhb8, 2210010N04Rik
Downstream gene4930568B11Rik, Nptx2, EG621967, Tmem130, LOC100039427, Trrap, Smurf1, AW146299, EG231885, EG666992, 1700018F24Rik, Arpc1a, Arpc1b, Pdap1, Bud31, Ptcd1, Cpsf4, Atp5j2, Zkscan14, Zkscan5, EG622116, Zfp655, LOC677270, EG666311, EG622127
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-167I21.bB6Ng01-167I21.g
ACCDH959016DH959017
length1,1201,071
definitionDH959016|Mus musculus domesticus DNA, BAC clone: B6Ng01-167I21, 5' end.DH959017|Mus musculus domesticus DNA, BAC clone: B6Ng01-167I21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(145,111,681 - 145,112,821)(145,014,587 - 145,015,680)
sequence
gaattctctggaactggagttacctgcagtgttaagttgccttgtgggtg
caaggagttgagccctacttgtctacaagagcagtgagtgctcctaactg
ctgaaccatcttcagcaccagccttcttatttatttatttattttcataa
gtcttgcgtgtatgactgtgtgaggatgttggatcagagccagttgtgaa
tggccatgtaggtactgggaattgaacctccgcccagcaccaaccatttt
aaaattgagagacctggcgtctgagtgagcttcagtcatttacaccccta
acctctgaataagtgattcagtttctggtgaccaacaaatgtacacagca
agtagattttcataatttggtgatctaaaaaaatgtcactgaaattctct
cttctctggaaatgcatcctcatagacaagttttgaacagacctttaaat
acgaagctgagatgcttttgttcttctccggggtaggacgagccatccga
gccatctgggcttgtgtttccttgtttatcttctcagcttgagtttaatg
gcggttgtgtaagtgaaagggtcagcttggtctccagcgaggagagtcaa
atctgcacgtcaaagctttaaaatgcctttataagcgccctttctagctg
agtatactggaatacccctttgaacacagcactggggaggctaaggcagg
aggactgctgtgggttaagaacagcctgggccacagagcaagacactctc
tcagaaaagtaaaacaagtgctggagagatggctcagtggtttaggtggg
aactattcttccagaggacccaaggtaggaccccagcgctggtgctgggt
gctcacagctgtccgcacctccgctccaacggaccctgtgtcctctcctg
gctctttggcacctgcaatctctctctctctctctctctcacacacacac
acacacatacatacatatacatgcaacacatacatactacataaataaaa
atacatcgttttgaaaaaaagatagtgtttttaaagtaaaacacactgat
ctctgaaattatttaaggattactctctagctcttaactattggcattct
atcctttctggactctattt
gaattcaggacctctggaagagcagctagtgctcttaactgctgagccat
ctctccagcccgacctttcactttggaggcttctgtctccacctctagag
tgctgggattacaggcttgagccaccatgcccagttaatgcaatgctggg
atgggtcctggggcttcaggcacgctgggtgactgctctatgaactgagc
tacacatacaacctcactgggtatcttttgaggtagagtctcaaaatgtt
acccagactggctctgaactcctaattctccttcagagtgccaccagatg
gacggatggacacacacacacacacacacacacacacacacaagaccctg
gaaatacataggcaacaattgggaaggattctcactgttccaacatttct
ttttccttgcttggtttttggagacatggtctcatgtagctgaggctggc
cttgaacttgctgtgtagtagtggacctgattctcttgaatcatttccca
agcactggggtgagagtcacgtgccggaacccacggcttcacgtgtgtta
ggtaaactcatgccaggcgatacttgggctagcggcatggcagtagctat
gcagagactgcatgggcctgtgtcagaccatggtcctctcctagggagcc
acatcgccatgctgtacactcagcaagtttgcggtcaggctgctaaaaaa
aagttggagaacctgaaggaagcgccgcggtgcttagagtttagggttct
cccaagcagggcagttatttctaattagtggccacagcccctgaaagcga
aaattaatcaaaagaggaggaggaggaaggctcagcagttgagtaggctt
cagtgggtgagcgtactcagttgttttccttcctacacccaaggatgtgt
gggcagtgattgggaggggctcgcctggtccctccctgggggtggtgacc
cggtgctgggttgggcaggggagatttgggcgtggagggccaccaatcat
agtttagaggtaagggaggggttaaagttcaggccacttgggcttcatga
gcctagtcctaaccaaacaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_145111681_145112821
seq2: B6Ng01-167I21.b_43_1162 (reverse)

seq1  AAAAAGAGTCACAGGAAAAGATAGAAATGCCAAATAGTGTAAAGAGCTAG  50
      ||| |||||| || |||| ||||| |||||| ||||  || |||||||||
seq2  AAATAGAGTC-CA-GAAAGGATAG-AATGCC-AATA--GTTAAGAGCTAG  44

seq1  AGAGTAAATACACTAAATATATTTCAGAGATCAGTTGTTGTTTTTAATTT  100
      |||||||   |  |||||| |||||||||||||||   ||||||     |
seq2  AGAGTAA--TCCTTAAATA-ATTTCAGAGATCAGT--GTGTTTT---ACT  86

seq1  TTAAAAACAACTAATTTTTTTTTTAAAAAAGATGTATTTTTATTTATGTA  150
      |||||||| ||||  | ||||||| |||| ||||||||||||||||||||
seq2  TTAAAAAC-ACTA--TCTTTTTTTCAAAACGATGTATTTTTATTTATGTA  133

seq1  GTATGTATGTGTTTGCATGTATATGTATGTATGTGTGTGTGTGTGTGTGA  200
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GTATGTATGTG-TTGCATGTATATGTATGTATGTGTGTGTGTGTGTGTGA  182

seq1  GAGAGAGAGAGAGAGAGAGAATTGCAGGTGCCCAAAGAGGCCAGGAGAGG  250
      ||||||||||||||||||| |||||||||| ||||||| |||||||||||
seq2  GAGAGAGAGAGAGAGAGAG-ATTGCAGGTG-CCAAAGA-GCCAGGAGAGG  229

seq1  ACACAGGGTCCGTTGGAGCGGAGGTGCGGACAGCTGTGAGCACCCAGCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGGGTCCGTTGGAGCGGAGGTGCGGACAGCTGTGAGCACCCAGCAC  279

seq1  CAGCGCTGGGGTCCTACCTTGGGTCCTCTGGAAGAATAGTTCCCACCTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGCTGGGGTCCTACCTTGGGTCCTCTGGAAGAATAGTTCCCACCTAA  329

seq1  ACCACTGAGCCATCTCTCCAGCACTTGTTTTACTTTTCTGAGAGAGTGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTGAGCCATCTCTCCAGCACTTGTTTTACTTTTCTGAGAGAGTGTC  379

seq1  TTGCTCTGTGGCCCAGGCTGTTCTTAACCCACAGCAGTCCTCCTGCCTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCTGTGGCCCAGGCTGTTCTTAACCCACAGCAGTCCTCCTGCCTTA  429

seq1  GCCTCCCCAGTGCTGTGTTCAAAGGGGTATTCCAGTATACTCAGCTAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCCCAGTGCTGTGTTCAAAGGGGTATTCCAGTATACTCAGCTAGAA  479

seq1  AGGGCGCTTATAAAGGCATTTTAAAGCTTTGACGTGCAGATTTGACTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCGCTTATAAAGGCATTTTAAAGCTTTGACGTGCAGATTTGACTCTC  529

seq1  CTCGCTGGAGACCAAGCTGACCCTTTCACTTACACAACCGCCATTAAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGCTGGAGACCAAGCTGACCCTTTCACTTACACAACCGCCATTAAACT  579

seq1  CAAGCTGAGAAGATAAACAAGGAAACACAAGCCCAGATGGCTCGGATGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTGAGAAGATAAACAAGGAAACACAAGCCCAGATGGCTCGGATGGC  629

seq1  TCGTCCTACCCCGGAGAAGAACAAAAGCATCTCAGCTTCGTATTTAAAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTCCTACCCCGGAGAAGAACAAAAGCATCTCAGCTTCGTATTTAAAGG  679

seq1  TCTGTTCAAAACTTGTCTATGAGGATGCATTTCCAGAGAAGAGAGAATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTCAAAACTTGTCTATGAGGATGCATTTCCAGAGAAGAGAGAATTT  729

seq1  CAGTGACATTTTTTTAGATCACCAAATTATGAAAATCTACTTGCTGTGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGACATTTTTTTAGATCACCAAATTATGAAAATCTACTTGCTGTGTA  779

seq1  CATTTGTTGGTCACCAGAAACTGAATCACTTATTCAGAGGTTAGGGGTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTTGGTCACCAGAAACTGAATCACTTATTCAGAGGTTAGGGGTGT  829

seq1  AAATGACTGAAGCTCACTCAGACGCCAGGTCTCTCAATTTTAAAATGGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGACTGAAGCTCACTCAGACGCCAGGTCTCTCAATTTTAAAATGGTT  879

seq1  GGTGCTGGGCGGAGGTTCAATTCCCAGTACCTACATGGCCATTCACAACT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTGGGCGGAGGTTCAATTCCCAGTACCTACATGGCCATTCACAACT  929

seq1  GGCTCTGATCCAACATCCTCACACAGTCATACACGCAAGACTTATGAAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTGATCCAACATCCTCACACAGTCATACACGCAAGACTTATGAAAA  979

seq1  TAAATAAATAAATAAGAAGGCTGGTGCTGAAGATGGTTCAGCAGTTAGGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAATAAATAAGAAGGCTGGTGCTGAAGATGGTTCAGCAGTTAGGA  1029

seq1  GCACTCACTGCTCTTGTAGACAAGTAGGGCTCAACTCCTTGCACCCACAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCACTGCTCTTGTAGACAAGTAGGGCTCAACTCCTTGCACCCACAA  1079

seq1  GGCAACTTAACACTGCAGGTAACTCCAGTTCCAGAGAATTC  1141
      |||||||||||||||||||||||||||||||||||||||||
seq2  GGCAACTTAACACTGCAGGTAACTCCAGTTCCAGAGAATTC  1120

seq1: chr5_145014587_145015680
seq2: B6Ng01-167I21.g_67_1137

seq1  GAATTCAGGACCTCTGGAAGAGCAGCTAGTGCTCTTAACTGCTGAGCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGACCTCTGGAAGAGCAGCTAGTGCTCTTAACTGCTGAGCCAT  50

seq1  CTCTCCAGCCCGACCTTTCACTTTGGAGGCTTCTGTCTCCACCTCTAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCAGCCCGACCTTTCACTTTGGAGGCTTCTGTCTCCACCTCTAGAG  100

seq1  TGCTGGGATTACAGGCTTGAGCCACCATGCCCAGTTAATGCAATGCTGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGATTACAGGCTTGAGCCACCATGCCCAGTTAATGCAATGCTGGG  150

seq1  ATGGGTCCTGGGGCTTCAGGCACGCTGGGTGACTGCTCTATGAACTGAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTCCTGGGGCTTCAGGCACGCTGGGTGACTGCTCTATGAACTGAGC  200

seq1  TACACATACAACCTCACTGGGTATCTTTTGAGGTAGAGTCTCAAAATGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACATACAACCTCACTGGGTATCTTTTGAGGTAGAGTCTCAAAATGTT  250

seq1  ACCCAGACTGGCTCTGAACTCCTAATTCTCCTTCAGAGTGCCACCAGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGACTGGCTCTGAACTCCTAATTCTCCTTCAGAGTGCCACCAGATG  300

seq1  GACGGATGGACACACACACACACACACACACACACACACACAAGACCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGGATGGACACACACACACACACACACACACACACACACAAGACCCTG  350

seq1  GAAATACATAGGCAACAATTGGGAAGGATTCTCACTGTTCCAACATTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATACATAGGCAACAATTGGGAAGGATTCTCACTGTTCCAACATTTCT  400

seq1  TTTTCCTTGCTTGGTTTTTGGAGACATGGTCTCATGTAGCTGAGGCTGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTTGCTTGGTTTTTGGAGACATGGTCTCATGTAGCTGAGGCTGGC  450

seq1  CTTGAACTTGCTGTGTAGTAGTGGACCTGATTCTCTTGAATCATTTCCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAACTTGCTGTGTAGTAGTGGACCTGATTCTCTTGAATCATTTCCCA  500

seq1  AGCACTGGGGTGAGAGTCACGTGCCGGAACCCACGGCTTCACGTGTGTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTGGGGTGAGAGTCACGTGCCGGAACCCACGGCTTCACGTGTGTTA  550

seq1  GGTAAACTCATGCCAGGCGATACTTGGGCTAGCGGCATGGCAGTAGCTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAACTCATGCCAGGCGATACTTGGGCTAGCGGCATGGCAGTAGCTAT  600

seq1  GCAGAGACTGCATGGGCCTGTGTCAGACCATGGTCCTCTCCTAGGGAGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGACTGCATGGGCCTGTGTCAGACCATGGTCCTCTCCTAGGGAGCC  650

seq1  ACATCGCCATGCTGTACACTCAGCAAGTTTGCGGTCAGGCTGCTAAAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCGCCATGCTGTACACTCAGCAAGTTTGCGGTCAGGCTGCTAAAAAA  700

seq1  AAGTTGGAGAACCTGAAGGAAGCGCCGCAGGTGCTTAGAGTTTAGGGTTC  750
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AAGTTGGAGAACCTGAAGGAAGCGCCGC-GGTGCTTAGAGTTTAGGGTTC  749

seq1  TCCCAAGCAGGGCAGTTATTTCTAATTAGTGGCCACAGCCCCTGAAAGCG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAGCAGGGCAGTTATTTCTAATTAGTGGCCACAGCCCCTGAAAGCG  799

seq1  AAAATTAATCAAAAGAGGAGGAGGAGGAAGGCTCAGCAGTTGAGTAGGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTAATCAAAAGAGGAGGAGGAGGAAGGCTCAGCAGTTGAGTAGGCT  849

seq1  TCAGTGGGTGAGCGTACTCAGTTGTTTTCCTTCCTACACCCAAGGATGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGGGTGAGCGTACTCAGTTGTTTTCCTTCCTACACCCAAGGATGTG  899

seq1  TGGGCAGTGATTGGGAGGGGCTCGCCTGGTCCCTCCCTGTGGGTGGTGAC  950
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TGGGCAGTGATTGGGAGGGGCTCGCCTGGTCCCTCCCTGGGGGTGGTGAC  949

seq1  CCGGGTGCTGGGTTGGGCAAGGGGAGGATTTGGGCGTGGAGGGGCAACGA  1000
      || ||||||||||||||| |||||| ||||||||||||||||| || | |
seq2  CC-GGTGCTGGGTTGGGC-AGGGGA-GATTTGGGCGTGGAGGGCCACCAA  996

seq1  AGTCCATAGTTTAGGAGGTAAAGGTGAGAGGGTTAAGAGTTCCAGGCCAG  1050
          ||||||||| ||||||| || |   ||||||| |||| ||||||| 
seq2  ---TCATAGTTTA-GAGGTAAGGGAG---GGGTTAA-AGTT-CAGGCCA-  1036

seq1  CTTGGGCTACATGAGCCTAGGTCCAAAACAAACA-AACAAACACA  1094
      |||||||| |||||||||| |||| || |||||| |         
seq2  CTTGGGCTTCATGAGCCTA-GTCCTAACCAAACACA---------  1071