BAC Information

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BAC

Clone NameB6Ng01-168E23
Chromosome5 (Build37)
Map Location 39,804,069 - 39,924,213
singlet/doubletdoublet
Overlap genenone
Upstream geneSlc2a9, Wdr1, 4930421P07Rik, 6820424L24Rik, Clnk, LOC384174
Downstream geneHs3st1, EG665839, LOC100040502
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-168E23.bB6Ng01-168E23.g
ACCDH959581DH959582
length1,1401,117
definitionDH959581|Mus musculus domesticus DNA, BAC clone: B6Ng01-168E23, 5' end.DH959582|Mus musculus domesticus DNA, BAC clone: B6Ng01-168E23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,804,069 - 39,805,200)(39,923,109 - 39,924,213)
sequence
gaattcagatcctttcttagcactttctcaacttgattattttgccccaa
tactagctgtgactcacctaggggaatagttgagcatggtgggaaggccc
agcgtgagactaaggaggtttacagtcactgcggatcagaatgcactgaa
gcacaaccaggctatagcaataagagccagctccgccgcaatccccttcc
tccagcttccctccatgtcctgacgcttctgcagtccaccaaaatggcat
ttctggctagagactgagtgttcacacagtaacagtggccatgcctcact
gaaggccattctagtgagttcatcttcttcctcattccatgacccaagtt
tcttcccacctttagtttcttctaaagcagtgttcctttctattccacta
tttatctggtaaatagaggaaagaatgaacgatcgtagggagactttttt
cctatgggtaaaggctagatgagacttcatacctctgctttagttgcaat
gattaacatttagtgatcacacagccagtgaatagttatggtgagcaggt
ttactgaccagatggttaactaacacctgtgatgagcagtccaggaagcc
catgtacaaccctcttccctccatttcccccccccccctttcactctaca
gcagggatgttttataatgggaacaaaataaatgtagaatggttctggaa
tgtttatattttgttactgtagttgggataaagatattattatatttgac
atggaaagaaagttgaatgtttctacacataactattatttccttaatag
atgaatgccattagtacaaatatttttccttctatgatggctgaagattc
tgagtcagggagaacttcagtagttttcctgacactcccctcttgatgag
aggtgaaagtgatattgaacccaagaagtttttgctccagggcagacttg
caaccaatattgggccattgagtctggcagaagtgtttgaagtggtggta
gaatgaaactgcagtcatgagaattctggagcctccaaacaatagcacag
acttggattcatctgatcacaggcattagcctaaaagacataaggagtct
ccactttccatatactgtgttctatttggctggtgcagca
gaattctgtggactttttagagagtatataaatgctagagtcccaatagg
tggtttggtgatggcagtgggttgttgattgtagggtgtttgctattgtt
tgaggtttgctcagtagttgtgcacaaaaaagaaacaacaaccaggagaa
attagatatcctaccagtaaagatcaaacctgccccaaggaactcattag
ccctagtcagaaggaagtagtctaacaataacgtcatcccctttcgcgtc
tatccatttttctctcctatccaatgtgatgttgtttaaagggtggaaaa
ggggtagagacttgtggataaaatgagcccacaaagtacccaagagtctg
gtcacaaatacttcccagtattcatgtttatcagtgacctgagagtctaa
attcagtagaatctttgtttttaatcagagacatgcaaagcaggtttgtt
gatatacaaagcaaaaccatatcctagaaaagttatttgaactgggtctg
agagtcaaggctcaaagatcaaatgttagactgcagggaaaaacataggt
gggtgttatgatgtttagatttaacattagagaaccctggtcgcatgcct
tcctctaataatttataaagcagatgactcgagacatactctaaatcatt
ttgctgcagttgtctcttttcactttctcatgaacacatggaaaacctgg
aagagtgctttgaacatgaagtacttagggaagtatttggctcaatgtaa
aaaaaaaaaaaaagtcataggcacagatgtcaccacatgcagccaggttg
cagggtcttgatgtgttggaaaaggctctatagtgggacacctaggtagg
cccactttcaacagtattatgatgggggaacagaataaaaatttccatgc
ttctctccagacactggcaggatagagacatccttttcctgtgtttggaa
agatgaagcatagactggtctattggctaacaatgcctagggaagcctcc
tcgagtttatatcctggcgaattctaacccttaccgatcaaccacctatc
agctaaacaatagggagaataagaaagcctacctttcataatcataaagc
gactctttgaaaacatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_39804069_39805200
seq2: B6Ng01-168E23.b_43_1182

seq1  GAATTCAGATCCTTTCTTAGCACTTTCTCAACTTGATTATTTTGCCCCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATCCTTTCTTAGCACTTTCTCAACTTGATTATTTTGCCCCAA  50

seq1  TACTAGCTGTGACTCACCTAGGGGAATAGTTGAGCATGGTGGGAAGGCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAGCTGTGACTCACCTAGGGGAATAGTTGAGCATGGTGGGAAGGCCC  100

seq1  AGCGTGAGACTAAGGAGGTTTACAGTCACTGCGGATCAGAATGCACTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTGAGACTAAGGAGGTTTACAGTCACTGCGGATCAGAATGCACTGAA  150

seq1  GCACAACCAGGCTATAGCAATAAGAGCCAGCTCCGCCGCAATCCCCTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAACCAGGCTATAGCAATAAGAGCCAGCTCCGCCGCAATCCCCTTCC  200

seq1  TCCAGCTTCCCTCCATGTCCTGACGCTTCTGCAGTCCACCAAAATGGCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCTTCCCTCCATGTCCTGACGCTTCTGCAGTCCACCAAAATGGCAT  250

seq1  TTCTGGCTAGAGACTGAGTGTTCACACAGTAACAGTGGCCATGCCTCACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGCTAGAGACTGAGTGTTCACACAGTAACAGTGGCCATGCCTCACT  300

seq1  GAAGGCCATTCTAGTGAGTTCATCTTCTTCCTCATTCCATGACCCAAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCCATTCTAGTGAGTTCATCTTCTTCCTCATTCCATGACCCAAGTT  350

seq1  TCTTCCCACCTTTAGTTTCTTCTAAAGCAGTGTTCCTTTCTATTCCACTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCCACCTTTAGTTTCTTCTAAAGCAGTGTTCCTTTCTATTCCACTA  400

seq1  TTTATCTGGTAAATAGAGGAAAGAATGAACGATCGTAGGGAGACTTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCTGGTAAATAGAGGAAAGAATGAACGATCGTAGGGAGACTTTTTT  450

seq1  CCTATGGGTAAAGGCTAGATGAGACTTCATACCTCTGCTTTAGTTGCAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGGGTAAAGGCTAGATGAGACTTCATACCTCTGCTTTAGTTGCAAT  500

seq1  GATTAACATTTAGTGATCACACAGCCAGTGAATAGTTATGGTGAGCAGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAACATTTAGTGATCACACAGCCAGTGAATAGTTATGGTGAGCAGGT  550

seq1  TTACTGACCAGATGGTTAACTAACACCTGTGATGAGCAGTCCAGGAAGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGACCAGATGGTTAACTAACACCTGTGATGAGCAGTCCAGGAAGCC  600

seq1  CATGTACAACCCTCTTCCCTCCATTTCCCCCCCCCCCCTTTCACTCTACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTACAACCCTCTTCCCTCCATTTCCCCCCCCCCCCTTTCACTCTACA  650

seq1  GCAGGGATGTTTTATAATGGGAACAAAATAAATGTAGAATGGTTCTGGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGATGTTTTATAATGGGAACAAAATAAATGTAGAATGGTTCTGGAA  700

seq1  TGTTTATATTTTGTTACTGTAGTTGGGATAAAGATATTATTATATTTGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATATTTTGTTACTGTAGTTGGGATAAAGATATTATTATATTTGAC  750

seq1  ATGGAAAGAAAGTTGAATGTTTCTACACATAACTATTATTTCCTTAATAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAAGAAAGTTGAATGTTTCTACACATAACTATTATTTCCTTAATAG  800

seq1  ATGAATGCCATTAGTACAAATATTTTTCCTTCTATGATGGCTGAAGATTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATGCCATTAGTACAAATATTTTTCCTTCTATGATGGCTGAAGATTC  850

seq1  TGAGTCAGGGAGAACTTCAGTAGTTTTCCTGACACTCCCCTCTTGATGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCAGGGAGAACTTCAGTAGTTTTCCTGACACTCCCCTCTTGATGAG  900

seq1  AGGTGAAAGTGATATTGAACCCAAGAAGTTTTTGCTCCAGGGCAGACTTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGAAAGTGATATTGAACCCAAGAAGTTTTTGCTCCAGGGCAGACTTG  950

seq1  CAACCAATATT-GGCCATTGAGTCTGGCAG-AGTGTTTGAAGT-GTGGTA  997
      ||||||||||| |||||||||||||||||| |||||||||||| ||||||
seq2  CAACCAATATTGGGCCATTGAGTCTGGCAGAAGTGTTTGAAGTGGTGGTA  1000

seq1  G-ATGAAACTGCAGTCATGAG-ATTCTGGAGCCTGCAAACAATAGCACAG  1045
      | ||||||||||||||||||| |||||||||||| |||||||||||||||
seq2  GAATGAAACTGCAGTCATGAGAATTCTGGAGCCTCCAAACAATAGCACAG  1050

seq1  ACTTGAATTCATCTGATCACA-GCATTAG-CTAAAAGACATAAGAAATCT  1093
      ||||| ||||||||||||||| ||||||| |||||||||||||| | |||
seq2  ACTTGGATTCATCTGATCACAGGCATTAGCCTAAAAGACATAAGGAGTCT  1100

seq1  CCACTTTCCATATACTGTGTTCTATGT-GCTGGTGCAGCA  1132
      ||||||||||||||||||||||||| | ||||||||||||
seq2  CCACTTTCCATATACTGTGTTCTATTTGGCTGGTGCAGCA  1140

seq1: chr5_39923109_39924213
seq2: B6Ng01-168E23.g_67_1183 (reverse)

seq1  CATGTTTGTCAAAGGAATCGCTTTTGGATTTATAAAAGGTAGGCTGTCTT  50
      ||||||| ||||| || |||||||  || |||| ||||||||||| ||||
seq2  CATGTTT-TCAAA-GAGTCGCTTTATGA-TTATGAAAGGTAGGCTTTCTT  47

seq1  -TTCT-CCTGTTGTTTAGCTGATGGTGGGTAGATAGGTAA-GGTTAGATT  97
       |||| ||| ||||||||||||| |  ||| ||| ||||| ||||||| |
seq2  ATTCTCCCTATTGTTTAGCTGATAGGTGGTTGATCGGTAAGGGTTAGAAT  97

seq1  TCCCCAGAATATAAACT-GAAGAGGCTTCCTTA-GCATTGTTAGCCAATA  145
      || |||| ||||||||| || ||||||||| || ||||||||||||||||
seq2  TCGCCAGGATATAAACTCGAGGAGGCTTCCCTAGGCATTGTTAGCCAATA  147

seq1  G-CCAGTCTATGCTTCATCTTTCCAAACACAGG-AAAGGATGTCTCTATC  193
      | ||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GACCAGTCTATGCTTCATCTTTCCAAACACAGGAAAAGGATGTCTCTATC  197

seq1  CTGCCAGTGTCTGGAGAGAAGCATGGAATTTTTATTTCTGTTTCCCCATC  243
      |||||||||||||||||||||||||||| ||||  ||||||| |||||||
seq2  CTGCCAGTGTCTGGAGAGAAGCATGGAAATTTTTATTCTGTTCCCCCATC  247

seq1  ATAATTACTGTTTGAAGTGGGCCTACCTAGGTGTCCCACTATAGAGCCTT  293
      |||| |||||||  ||||||||||||||||||||||||||||||||||||
seq2  ATAA-TACTGTTGAAAGTGGGCCTACCTAGGTGTCCCACTATAGAGCCTT  296

seq1  TTCC-ACACATC-AGACCCTGCAACCTGGCTGCATGTGGTGACATCTGTG  341
      |||| ||||||| |||||||||||||||||||||||||||||||||||||
seq2  TTCCAACACATCAAGACCCTGCAACCTGGCTGCATGTGGTGACATCTGTG  346

seq1  CCTATGAC-TTTTTTTTTTTTTTACATTGAGCCAAATACTT-CCTTAGTA  389
      |||||||| |||||||||||||||||||||||||||||||| ||| ||||
seq2  CCTATGACTTTTTTTTTTTTTTTACATTGAGCCAAATACTTCCCTAAGTA  396

seq1  CTTCATGTTC-AAGCACTCTTCCAGGTTTTCCATGTGTTCATGAG-AAGT  437
      |||||||||| |||||||||||||||||||||||||||||||||| ||||
seq2  CTTCATGTTCAAAGCACTCTTCCAGGTTTTCCATGTGTTCATGAGAAAGT  446

seq1  G-AAAGAGACAACTGCAGC-AAATGATTTAGAGTATGTCTCGAGTCATCT  485
      | ||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GAAAAGAGACAACTGCAGCAAAATGATTTAGAGTATGTCTCGAGTCATCT  496

seq1  GCTTTATAAATTATTAGAGGAAGGCATGCGACCAGGGTTCTCTAATGTTA  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTATAAATTATTAGAGGAAGGCATGCGACCAGGGTTCTCTAATGTTA  546

seq1  AATCT-AACATCATAACACCCACCTATGTTTTTCCCTGCAGTCTAACATT  584
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAAACATCATAACACCCACCTATGTTTTTCCCTGCAGTCTAACATT  596

seq1  TGATCTTTGAGCCTTGACTCTCAGACCCAGTTCAAATAACTTTTCTAGGA  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTTTGAGCCTTGACTCTCAGACCCAGTTCAAATAACTTTTCTAGGA  646

seq1  TATGGTTTTGCTTTGTATATCAACAAACCTGCTTTGCATGTCTCTGATTA  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTTTTGCTTTGTATATCAACAAACCTGCTTTGCATGTCTCTGATTA  696

seq1  AAAACAAAGATTCTACTGAATTTAGACTCTCAGGTCACTGATAAACATGA  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAGATTCTACTGAATTTAGACTCTCAGGTCACTGATAAACATGA  746

seq1  ATACTGGGAAGTATTTGTGACCAGACTCTTGGGTACTTTGTGGGCTCATT  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGGGAAGTATTTGTGACCAGACTCTTGGGTACTTTGTGGGCTCATT  796

seq1  TTATCCACAAGTCTCTACCCCTTTTCCACCCTTTAAACAACATCACATTG  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCACAAGTCTCTACCCCTTTTCCACCCTTTAAACAACATCACATTG  846

seq1  GATAGGAGAGAAAAATGGATAGACGCGAAAGGGGATGACGTTATTGTTAG  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGAGAGAAAAATGGATAGACGCGAAAGGGGATGACGTTATTGTTAG  896

seq1  ACTACTTCCTTCTGACTAGGGCTAATGAGTTCCTTGGGGCAGGTTTGATC  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTTCCTTCTGACTAGGGCTAATGAGTTCCTTGGGGCAGGTTTGATC  946

seq1  TTTACTGGTAGGATATCTAATTTCTCCTGGTTGTTGTTTCTTTTTTGTGC  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTGGTAGGATATCTAATTTCTCCTGGTTGTTGTTTCTTTTTTGTGC  996

seq1  ACAACTACTGAGCAAACCTCAAACAATAGCAAACACCCTACAATCAACAA  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTACTGAGCAAACCTCAAACAATAGCAAACACCCTACAATCAACAA  1046

seq1  CCCACTGCCATCACCAAACCACCTATTGGGACTCTAGCATTTATATACTC  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTGCCATCACCAAACCACCTATTGGGACTCTAGCATTTATATACTC  1096

seq1  TCTAAAAAGTCCACAGAATTC  1105
      |||||||||||||||||||||
seq2  TCTAAAAAGTCCACAGAATTC  1117