BAC Information

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BAC

Clone NameB6Ng01-168I22
Chromosome5 (Build37)
Map Location 58,490,802 - 58,619,388
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041349, LOC666455, LOC625721, EG666465, Pcdh7
Downstream geneLOC100041385, LOC100041396, LOC666499, EG625870
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-168I22.bB6Ng01-168I22.g
ACCDH959765DH959766
length9901,216
definitionDH959765|Mus musculus domesticus DNA, BAC clone: B6Ng01-168I22, 5' end.DH959766|Mus musculus domesticus DNA, BAC clone: B6Ng01-168I22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,618,806 - 58,619,388)(58,490,802 - 58,492,025)
sequence
gaattcaccaatacctgctcatgcatcatcagaggagagtacaatagaaa
tagtacaaatactatattggtaaaaatagtctcctctatgctgtgcatgt
tggggaccagccgtgggtcatcctgttttcttcccatttcagccaccact
gcactccatgctgaaaggatgaagaggagtcaataatgaatggggtcttc
aggtcccactgggggtgaatgcaggagacagagtgggagtggggatctta
atgttacaactctcttagacaaagccttctcttcccacaatcttcagtga
aacagctctcttagccaatcttagcttgtgtgcatacctctatttggggt
aagcttgtactcataaactttatttggtgtggaaaagtgctatatatgag
ctttggaaagtgggaaggagttttcagggagaatgaaatttttagctgct
gtttaaagtactgtgaataccttgtttgtatgaagaggcatttcaggaac
accaggtacttcctgggtggattcttaccagggaaaagagaaagttgaac
ttgtaggtctgccaaggactgctcactctttctcatgttgagggtagtgg
ggggtcaggctccctagacaaggtcagagaaagaaaagtgctgctgctgg
taaagagaatccgctattttgctatgagctcagagaagctatcgagtaat
ggtagactgtgaccttaattagcagggtttccccacacccatctaatcat
tttgtttcctgtgcaattatttgcactctgagaataactggtgtacattt
taaagcagaaataatggcaacaggaatatcttatcattttaactgaaaaa
attaaagtgataaaaagttcagtttgaaatagttcctttttctttttcga
taaccacatgaaccaaatttttacttattaatcgtttttaccagtttatg
agtcagactatggatgggatgtatgggatggtcatattgc
gaattctttgcatcaaaggtaagggtctgaattatttttagccttgcaca
aatctaagaatatctactttaaaaaaattaaaattctccaggtatatata
ctgaattggtagacttctgactcagagacactctaattgcacagtgacat
ctaaacatccaccatgcactctctttccatgcacacaaacacttaagaaa
ctaatcatttaatattgattatttagtgtttcactgtcaacaaaactgat
gtcaaatatttaggtttgcccaagcttaagttcaattaagttaagcaggt
atccactgtcactgaagtttatcaggtctggagagtcatataagaaaaat
aaagcataaaatgaactactaaataagacattattgtgggtgtagaatga
acagttaatcaaatacctggtagtttttcacaagctgtagattgagttca
taagtttctgactacctttggatttagtcatgtttttgaagagatatctg
caaagggttattggctttattttagaactaaggaagacgtttcataagaa
gtacaaagatacttctgcatattaaactggtacaaagctagcttgccata
tcatatattacagaactgactttgttgaaagagtttcattattttgccca
aacaacttatagtttcaagtatccaaaatcttagaacacatatcagtaaa
aaataacttcacatcatctgaaggctgtggttatatcaacacaatggatt
ttattattttctgtttttggtttttcttttgtttttgttttcttttgttt
ttgttaatgttgcagcattctcaagctgaagatgctagcataatctatcc
tgagaagagtgggtgatagcctctaggctatagagagcatgtaaggaata
caggtgacttccaacactcagctacatcataatgtgaactaccaataacc
ctgtgtgaaacatttttcaaaggaggatgtttattaaaaattttactaag
gtgtctccaaggtgggcctcttcgattgtcctcttggtcagctctggaag
ggaactataatttcaaccacagtcttaaataactcactagcatggtaatt
tggggaaaaaaacttgcctccttttttttttaaatcattaaaaaccgagg
accaaacatttgtgagtccattgacatggcagaatctgagtaacctagga
ttttacagggtcctac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_58618806_58619388
seq2: B6Ng01-168I22.b_48_630 (reverse)

seq1  AGAAAGAGTGAGCAGTCCTTGGCAGACCTACAAGTTCAACTTTCTCTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAGTGAGCAGTCCTTGGCAGACCTACAAGTTCAACTTTCTCTTTT  50

seq1  CCCTGGTAAGAATCCACCCAGGAAGTACCTGGTGTTCCTGAAATGCCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGTAAGAATCCACCCAGGAAGTACCTGGTGTTCCTGAAATGCCTCT  100

seq1  TCATACAAACAAGGTATTCACAGTACTTTAAACAGCAGCTAAAAATTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACAAACAAGGTATTCACAGTACTTTAAACAGCAGCTAAAAATTTCA  150

seq1  TTCTCCCTGAAAACTCCTTCCCACTTTCCAAAGCTCATATATAGCACTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCCTGAAAACTCCTTCCCACTTTCCAAAGCTCATATATAGCACTTT  200

seq1  TCCACACCAAATAAAGTTTATGAGTACAAGCTTACCCCAAATAGAGGTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACACCAAATAAAGTTTATGAGTACAAGCTTACCCCAAATAGAGGTAT  250

seq1  GCACACAAGCTAAGATTGGCTAAGAGAGCTGTTTCACTGAAGATTGTGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACAAGCTAAGATTGGCTAAGAGAGCTGTTTCACTGAAGATTGTGGG  300

seq1  AAGAGAAGGCTTTGTCTAAGAGAGTTGTAACATTAAGATCCCCACTCCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAGGCTTTGTCTAAGAGAGTTGTAACATTAAGATCCCCACTCCCA  350

seq1  CTCTGTCTCCTGCATTCACCCCCAGTGGGACCTGAAGACCCCATTCATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTCTCCTGCATTCACCCCCAGTGGGACCTGAAGACCCCATTCATTA  400

seq1  TTGACTCCTCTTCATCCTTTCAGCATGGAGTGCAGTGGTGGCTGAAATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTCCTCTTCATCCTTTCAGCATGGAGTGCAGTGGTGGCTGAAATGG  450

seq1  GAAGAAAACAGGATGACCCACGGCTGGTCCCCAACATGCACAGCATAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAACAGGATGACCCACGGCTGGTCCCCAACATGCACAGCATAGAG  500

seq1  GAGACTATTTTTACCAATATAGTATTTGTACTATTTCTATTGTACTCTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTATTTTTACCAATATAGTATTTGTACTATTTCTATTGTACTCTCC  550

seq1  TCTGATGATGCATGAGCAGGTATTGGTGAATTC  583
      |||||||||||||||||||||||||||||||||
seq2  TCTGATGATGCATGAGCAGGTATTGGTGAATTC  583

seq1: chr5_58490802_58492025
seq2: B6Ng01-168I22.g_64_1279

seq1  GAATTCTTTGCATCAAAGGTAAGGGTCTGAATTATTTTTAGCCTTGCACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGCATCAAAGGTAAGGGTCTGAATTATTTTTAGCCTTGCACA  50

seq1  AATCTAAGAATATCTACTTTAAAAAAATTAAAATTCTCCAGGTATATATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAAGAATATCTACTTTAAAAAAATTAAAATTCTCCAGGTATATATA  100

seq1  CTGAATTGGTAGACTTCTGACTCAGAGACACTCTAATTGCACAGTGACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATTGGTAGACTTCTGACTCAGAGACACTCTAATTGCACAGTGACAT  150

seq1  CTAAACATCCACCATGCACTCTCTTTCCATGCACACAAACACTTAAGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACATCCACCATGCACTCTCTTTCCATGCACACAAACACTTAAGAAA  200

seq1  CTAATCATTTAATATTGATTATTTAGTGTTTCACTGTCAACAAAACTGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATCATTTAATATTGATTATTTAGTGTTTCACTGTCAACAAAACTGAT  250

seq1  GTCAAATATTTAGGTTTGCCCAAGCTTAAGTTCAATTAAGTTAAGCAGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAATATTTAGGTTTGCCCAAGCTTAAGTTCAATTAAGTTAAGCAGGT  300

seq1  ATCCACTGTCACTGAAGTTTATCAGGTCTGGAGAGTCATATAAGAAAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACTGTCACTGAAGTTTATCAGGTCTGGAGAGTCATATAAGAAAAAT  350

seq1  AAAGCATAAAATGAACTACTAAATAAGACATTATTGTGGGTGTAGAATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCATAAAATGAACTACTAAATAAGACATTATTGTGGGTGTAGAATGA  400

seq1  ACAGTTAATCAAATACCTGGTAGTTTTTCACAAGCTGTAGATTGAGTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTAATCAAATACCTGGTAGTTTTTCACAAGCTGTAGATTGAGTTCA  450

seq1  TAAGTTTCTGACTACCTTTGGATTTAGTCATGTTTTTGAAGAGATATCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTTCTGACTACCTTTGGATTTAGTCATGTTTTTGAAGAGATATCTG  500

seq1  CAAAGGGTTATTGGCTTTATTTTAGAACTAAGGAAGACGTTTCATAAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGGTTATTGGCTTTATTTTAGAACTAAGGAAGACGTTTCATAAGAA  550

seq1  GTACAAAGATACTTCTGCATATTAAACTGGTACAAAGCTAGCTTGCCATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAAAGATACTTCTGCATATTAAACTGGTACAAAGCTAGCTTGCCATA  600

seq1  TCATATATTACAGAACTGACTTTGTTGAAAGAGTTTCATTATTTTGCCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATATTACAGAACTGACTTTGTTGAAAGAGTTTCATTATTTTGCCCA  650

seq1  AACAACTTATAGTTTCAAGTATCCAAAATCTTAGAACACATATCAGTAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACTTATAGTTTCAAGTATCCAAAATCTTAGAACACATATCAGTAAA  700

seq1  AAATAACTTCACATCATCTGAAGGCTGTGGTTATATCAACACAATGGATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAACTTCACATCATCTGAAGGCTGTGGTTATATCAACACAATGGATT  750

seq1  TTATTATTTTCTGTTTTTGGTTTTTCTTTTGTTTTTGTTTTCTTTTGTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATTTTCTGTTTTTGGTTTTTCTTTTGTTTTTGTTTTCTTTTGTTT  800

seq1  TTGTTAATGTTGCAGCATTCTCAAGCTGAAGATGCTAGCATAATCTATCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAATGTTGCAGCATTCTCAAGCTGAAGATGCTAGCATAATCTATCC  850

seq1  TGAGAAGAGTGGGTGATAGCCTCTAGGCTATAGAGAGCATGTAAGGAAAT  900
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TGAGAAGAGTGGGTGATAGCCTCTAGGCTATAGAGAGCATGTAAGG-AAT  899

seq1  ACAGGTGACTTCCAACACTCAGCTACATCATAATGTGAACTACCAATAAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTGACTTCCAACACTCAGCTACATCATAATGTGAACTACCAATAAC  949

seq1  CCTGTGTGAAACCATTTTTCAAAGGATGATGTTTATTATATATTTTACTT  1000
      ||||||||||| |||||||||||||| ||||||||||| | |||||||| 
seq2  CCTGTGTGAAA-CATTTTTCAAAGGAGGATGTTTATTAAAAATTTTACTA  998

seq1  ATGTGTTCTCAATGTTGGCCTC-TCGATTGT-CTCTTGGTCAGTCTCTGA  1048
      | ||||   ||| || |||||| |||||||| ||||||||||| ||||| 
seq2  AGGTGTCTCCAAGGTGGGCCTCTTCGATTGTCCTCTTGGTCAG-CTCTGG  1047

seq1  AGGGAAAC--TAAGTTCAAACACAGTC-TAAATCACTCACTAGCAGTGTA  1095
      | || |||  ||| ||||| ||||||| ||||| |||||||||||  |||
seq2  AAGGGAACTATAATTTCAACCACAGTCTTAAATAACTCACTAGCATGGTA  1097

seq1  ATTT-GGGAAAATATCTTGCTTCCTTTTTTTTTTTAAATCTATTAATAAC  1144
      |||| ||||||| | ||||| ||| ||||||||||||||| ||||| |||
seq2  ATTTGGGGAAAAAAACTTGCCTCC-TTTTTTTTTTAAATC-ATTAAAAAC  1145

seq1  ACGAGGACCAAGCATTATGTGAGTCAATGTGACAT-GCAGAATTCTGAGT  1193
       |||||||||| |||| |||||||| || |||||| |||||| |||||||
seq2  -CGAGGACCAAACATT-TGTGAGTCCAT-TGACATGGCAGAA-TCTGAGT  1191

seq1  AACACATAAGGAATTTTACAGGTGTTCCTAC  1224
      |||  |    | |||||||||  | ||||||
seq2  AACCTA----GGATTTTACAG--GGTCCTAC  1216