BAC Information

Click to search

BAC

Clone NameB6Ng01-169B10
Chromosome5 (Build37)
Map Location 56,714,856 - 56,846,328
singlet/doubletdoublet
Overlap genenone
Upstream geneEG666405
Downstream geneLOC100041335, LOC100041349, LOC666455
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-169B10.bB6Ng01-169B10.g
ACCDH960157DH960158
length1,0941,106
definitionDH960157|Mus musculus domesticus DNA, BAC clone: B6Ng01-169B10, 5' end.DH960158|Mus musculus domesticus DNA, BAC clone: B6Ng01-169B10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,845,208 - 56,846,328)(56,714,856 - 56,715,901)
sequence
gaattctaagtgttcttgctactatatctggaatttaggtgtgttttcta
tgggtacaactcagaagtttgtacagaaaacatgctatagaataactttt
ctacacacacacacacacacacacacacacacacacacatatatatatac
atatatttaatagaaaaccacatacattttacacagtagtatatggccac
tacctaccccccataggaaaaacatgttcaaattttcctggattcatgcc
aacacattttgttttattaattttcagatttatgtttgttttatttttct
ttttggaaacatttcctcaaacagatgctatctgattatgattgtgcttt
gttgtttttttttaatgattaattgtgttgttgttattccatatgttcct
tgtatttttgtcatgaatcatgaacttgacagcttcctcccccctctgag
tgtgtgtctctgtgtctatgtctctttctctctttgtctctctgtctctc
tctttcacatctctttctctgtgtgtgtttttcattaatttatttgctca
gctattaaaaatcatggaacatggatattatgagttttgcaggcaaatgg
gtcaaaatagaaaacatcattctgagtgagctaacccagacccagaaagg
cacacattgtatatactcaattattcttgtgtgtatattttaaaggtagt
agctttccctatggtttccttaaagatttttgtgctaagcacttcctctc
actctctcattccctaacttctcatccctctactcttttaagcattattt
tgcatactgcttagctatctgtctatcttctttgggaagctataatttct
aatgaatacgttttactttttgttgagtataacattttttcacacttttt
cctttgctttttattgaacctacattttatcatgcctttacctccccaac
tccctccagatcatcactgcctgctaccacccagttatattctgcctagc
tctacagaatatagagatcatatgtaataactctcagttttaattttagt
gatctagagctggacacagctccttgtaagctgaatgggacatt
gaattcagtatcatctatgaatatagatgcaaaatttcacaataaaattt
ttacaaaatgaatcaaggaacacatcaaaaacattatttgactgataggc
ttcatcccaaaaatgtaagcatgattaggcatacataaaacaataaatgc
attgtctcatataagcagacaggaagttaaaaaaagccataattatctca
tttaatgcagaaaaggcattaaatgagacaccgatattttcttttctttt
tttcttttttttataaataatcttagagaagttaggaatataagagacat
acctcaatctacagagactgggtagtctataaccaacccataggccaaca
tcaatttatatgtaaagaaattcaaagcatattcaggaaaatcaggaaca
agacaatgtttgctcacctttctttactatttaatacagttttcaaaata
ttagatatagcagtacaacaactgttggagattatggttctacaagtaag
aatgggagaattcaaaataacctaatttagtgacgatataatagtgtatg
taagggatgctaaaaattctacccgaaaatggattatcactacagaaatc
agtagaccttctctatataaatggatatatacttgagctctttggaacaa
ccaaggattttctgaatagactgctattagcacaggcaccaaaaccaaaa
attcataaatgagtcaaaacaaaactgaaaaacttctgtattgtgattcc
atctttcaaagggttaaaaataaacaatcaaacattaaatagagttgtaa
tatctaaaatatgtaaactaaaaacaacacacacacacaccaaaacaaaa
caaaacaaattaaaacaaaaacagaaaattaacataaaataaaacaagac
acaaaaataaatttaaaagtatggtacaggtctaaacagaaaattcaaga
agctcaaatggctaagaaaaatatataaatgtcaacatcttattttcatg
gagtgaaacacttatacacatcagaatgtgagataataataaataattta
atataatatatataaattaattaaattaagactcttttgctgaggcagat
gtggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_56845208_56846328
seq2: B6Ng01-169B10.b_46_1139 (reverse)

seq1  AATGTACCCCATTTCAGCCTACAAGAGCCTGTGTCACAGCCTCTAGATCA  50
      |||||  |||| |||||| ||||||   ||||||| ||| ||||||||||
seq2  AATGT--CCCA-TTCAGCTTACAAGGAGCTGTGTC-CAG-CTCTAGATCA  45

seq1  CCTTAAAAATTTAAAAACTGAAGAGTTATTTACAATATGAATCCTCTATA  100
      |  |||||   | ||||||| ||||||| |||| ||||||   |||||||
seq2  C--TAAAA---TTAAAACTG-AGAGTTA-TTAC-ATATGA--TCTCTATA  85

seq1  TTCTGTAGAGCTAGGCAAGAATATAAACTGGGGTGGTTAAGCAGGCAGTG  150
      |||||||||||||||| ||||||| |||| |||||||  |||||||||||
seq2  TTCTGTAGAGCTAGGC-AGAATAT-AACT-GGGTGGT--AGCAGGCAGTG  130

seq1  ATGATCTGGAGGGAGTTGGGGGAGGTAAAAGGCATGATTAAAATGTAGGT  200
      ||||||||||||||||| |||||||| |||||||||| ||||||||||||
seq2  ATGATCTGGAGGGAGTT-GGGGAGGT-AAAGGCATGA-TAAAATGTAGGT  177

seq1  TCAATTAAAAAAGCAAAGGAAAAAAGTGTGAAAAAATGTTATAACTCAAC  250
      |||||  |||||||||||| |||||||||||||||||||||| |||||||
seq2  TCAAT--AAAAAGCAAAGG-AAAAAGTGTGAAAAAATGTTAT-ACTCAAC  223

seq1  AAAAAGTAAAACGTATTCATTAGAAATTATAGCTTCCCAAAGAAGATAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTAAAACGTATTCATTAGAAATTATAGCTTCCCAAAGAAGATAGA  273

seq1  CAGATAGCTAAGCAGTATGCAAAATAATGCTTAAAAGAGTAGAGGGATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAGCTAAGCAGTATGCAAAATAATGCTTAAAAGAGTAGAGGGATGA  323

seq1  GAAGTTAGGGAATGAGAGAGTGAGAGGAAGTGCTTAGCACAAAAATCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTAGGGAATGAGAGAGTGAGAGGAAGTGCTTAGCACAAAAATCTTT  373

seq1  AAGGAAACCATAGGGAAAGCTACTACCTTTAAAATATACACACAAGAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAACCATAGGGAAAGCTACTACCTTTAAAATATACACACAAGAATA  423

seq1  ATTGAGTATATACAATGTGTGCCTTTCTGGGTCTGGGTTAGCTCACTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGTATATACAATGTGTGCCTTTCTGGGTCTGGGTTAGCTCACTCAG  473

seq1  AATGATGTTTTCTATTTTGACCCATTTGCCTGCAAAACTCATAATATCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATGTTTTCTATTTTGACCCATTTGCCTGCAAAACTCATAATATCCA  523

seq1  TGTTCCATGATTTTTAATAGCTGAGCAAATAAATTAATGAAAAACACACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCATGATTTTTAATAGCTGAGCAAATAAATTAATGAAAAACACACA  573

seq1  CAGAGAAAGAGATGTGAAAGAGAGAGACAGAGAGACAAAGAGAGAAAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAAAGAGATGTGAAAGAGAGAGACAGAGAGACAAAGAGAGAAAGAG  623

seq1  ACATAGACACAGAGACACACACTCAGAGGGGGGAGGAAGCTGTCAAGTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGACACAGAGACACACACTCAGAGGGGGGAGGAAGCTGTCAAGTTC  673

seq1  ATGATTCATGACAAAAATACAAGGAACATATGGAATAACAACAACACAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTCATGACAAAAATACAAGGAACATATGGAATAACAACAACACAAT  723

seq1  TAATCATTAAAAAAAAACAACAAAGCACAATCATAATCAGATAGCATCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCATTAAAAAAAAACAACAAAGCACAATCATAATCAGATAGCATCTG  773

seq1  TTTGAGGAAATGTTTCCAAAAAGAAAAATAAAACAAACATAAATCTGAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGGAAATGTTTCCAAAAAGAAAAATAAAACAAACATAAATCTGAAA  823

seq1  ATTAATAAAACAAAATGTGTTGGCATGAATCCAGGAAAATTTGAACATGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATAAAACAAAATGTGTTGGCATGAATCCAGGAAAATTTGAACATGT  873

seq1  TTTTCCTATGGGGGGTAGGTAGTGGCCATATACTACTGTGTAAAATGTAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTATGGGGGGTAGGTAGTGGCCATATACTACTGTGTAAAATGTAT  923

seq1  GTGGTTTTCTATTAAATATATGTATATATATATGTGTGTGTGTGTGTGTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTTTCTATTAAATATATGTATATATATATGTGTGTGTGTGTGTGTG  973

seq1  TGTGTGTGTGTGTGTGTGTAGAAAAGTTATTCTATAGCATGTTTTCTGTA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTAGAAAAGTTATTCTATAGCATGTTTTCTGTA  1023

seq1  CAAACTTCTGAGTTGTACCCATAGAAAACACACCTAAATTCCAGATATAG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTTCTGAGTTGTACCCATAGAAAACACACCTAAATTCCAGATATAG  1073

seq1  TAGCAAGAACACTTAGAATTC  1121
      |||||||||||||||||||||
seq2  TAGCAAGAACACTTAGAATTC  1094

seq1: chr5_56714856_56715901
seq2: B6Ng01-169B10.g_150_1173

seq1  ATTATTTGACTGATAGGCTTCATCCCAAAAATGTAAGCATGATTAGGCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTGACTGATAGGCTTCATCCCAAAAATGTAAGCATGATTAGGCAT  50

seq1  ACATAAAACAATAAATGCATTGTCTCATATAAGCAGACAGGAAGTTAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAAACAATAAATGCATTGTCTCATATAAGCAGACAGGAAGTTAAAA  100

seq1  AAAGCCATAATTATCTCATTTAATGCAGAAAAGGCATTAAATGAGACACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCATAATTATCTCATTTAATGCAGAAAAGGCATTAAATGAGACACC  150

seq1  GATATTTTCTTTTCTTTTTTTCTTTTTTTTATAAATAATCTTAGAGAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTTTCTTTTCTTTTTTTCTTTTTTTTATAAATAATCTTAGAGAAGT  200

seq1  TAGGAATATAAGAGACATACCTCAATCTACAGAGACTGGGTAGTCTATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAATATAAGAGACATACCTCAATCTACAGAGACTGGGTAGTCTATAA  250

seq1  CCAACCCATAGGCCAACATCAATTTATATGTAAAGAAATTCAAAGCATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCCATAGGCCAACATCAATTTATATGTAAAGAAATTCAAAGCATAT  300

seq1  TCAGGAAAATCAGGAACAAGACAATGTTTGCTCACCTTTCTTTACTATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAAAATCAGGAACAAGACAATGTTTGCTCACCTTTCTTTACTATTT  350

seq1  AATACAGTTTTCAAAATATTAGATATAGCAGTACAACAACTGTTGGAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAGTTTTCAAAATATTAGATATAGCAGTACAACAACTGTTGGAGAT  400

seq1  TATGGTTCTACAAGTAAGAATGGGAGAATTCAAAATAACCTAATTTAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTTCTACAAGTAAGAATGGGAGAATTCAAAATAACCTAATTTAGTG  450

seq1  ACGATATAATAGTGTATGTAAGGGATGCTAAAAATTCTACCCGAAAATGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGATATAATAGTGTATGTAAGGGATGCTAAAAATTCTACCCGAAAATGG  500

seq1  ATTATCACTACAGAAATCAGTAGACCTTCTCTATATAAATGGATATATAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCACTACAGAAATCAGTAGACCTTCTCTATATAAATGGATATATAC  550

seq1  TTGAGCTCTTTGGAACAACCAAGGATTTTCTGAATAGACTGCTATTAGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCTCTTTGGAACAACCAAGGATTTTCTGAATAGACTGCTATTAGCA  600

seq1  CAGGCACCAAAACCAAAAATTCATAAATGAGTCAAAACAAAACTGAAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCACCAAAACCAAAAATTCATAAATGAGTCAAAACAAAACTGAAAAA  650

seq1  CTTCTGTATTGTGATTCCATCTTTCAAAGGGTTAAAAATAAACAATCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGTATTGTGATTCCATCTTTCAAAGGGTTAAAAATAAACAATCAAA  700

seq1  CATTAAATAGAGTTGTAATATCTAAAATATGTAAACTAAAAACAACACAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAATAGAGTTGTAATATCTAAAATATGTAAACTAAAAACAACACAC  750

seq1  ACACACACCAAAACAAAACAAAACAAATTAAAACAAAAACAGAAAATTTA  800
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ACACACACCAAAACAAAACAAAACAAATTAAAACAAAAACAGAAAA-TTA  799

seq1  ACATAAAATAAAAACAAGACACAAAAAATAAATTTAAAAGTATGGTACAG  850
      ||||||||| |||||||||||| |||||||||||||||||||||||||||
seq2  ACATAAAAT-AAAACAAGACAC-AAAAATAAATTTAAAAGTATGGTACAG  847

seq1  GTCTAAACAGAAAATTCAAGAAGCTCAAATGGCTAAGAAAAATATATAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAAACAGAAAATTCAAGAAGCTCAAATGGCTAAGAAAAATATATAAA  897

seq1  TGTTCAACATCTTATTCTACATGGAAGTGGAAAACAACTTATACACATCA  950
      || ||||||||||||| | ||||| ||||  |||| ||||||||||||||
seq2  TG-TCAACATCTTATT-TTCATGG-AGTG--AAAC-ACTTATACACATCA  941

seq1  GAATGTTGAAGATAAATAAAATAAAATAATATAATATAATATAATATAAA  1000
      ||||||   |||| |||||    ||||||| ||||||||||| |||||||
seq2  GAATGT--GAGAT-AATAA---TAAATAATTTAATATAATAT-ATATAAA  984

seq1  ATAAAATTAAATTTAAAAGACATCTTATGCTGAGGCAGATGTGGAA  1046
       |  |||||||||   ||||| |||| |||||||||||||||||||
seq2  TT--AATTAAATT---AAGAC-TCTTTTGCTGAGGCAGATGTGGAA  1024