BAC Information

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BAC

Clone NameB6Ng01-169C15
Chromosome5 (Build37)
Map Location 105,923,517 - 106,051,545
singlet/doubletdoublet
Overlap geneLrrc8c
Upstream genePkd2, BC005561, LOC100042165, LOC100041172, D930016D06Rik, 2310012P17Rik, LOC640963, LOC100041199, LOC666726, C230055K05Rik, LOC100041216, Abcg3, LOC626471, EG545790, 5830443L24Rik, BC057170, Gbp4, LOC675363, LOC626578, Mpa2l, EG634650, Lrrc8b
Downstream geneLrrc8d, LOC100042335, D830014E11Rik, LOC100042349, Zfp326, LOC626723, LOC546882, LOC671295, 4930458A03Rik, Barhl2, EG666892, LOC100042389, Zfp644
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-169C15.bB6Ng01-169C15.g
ACCDH960213DH960214
length1,023377
definitionDH960213|Mus musculus domesticus DNA, BAC clone: B6Ng01-169C15, 5' end.DH960214|Mus musculus domesticus DNA, BAC clone: B6Ng01-169C15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,050,531 - 106,051,545)(105,923,517 - 105,923,899)
sequence
gaattcatttggatcccaggaaacacagatcaggctcaattcatggagga
cctggaaagccaggaagctggcttactgagacagacaaggcaagtgtttg
gatcagagaaggaagagcagtgataggtctgtgacccttaatctggaggc
ggagatgagagcaacagggcaggtagggagtttatgatatttgttttctg
ctccttaagcttgagatgacaggatacctagaaatgcccagaaggacagg
tgggctaggagggagaaaagaggtggcagccagaggcagaaacctacaag
tcacccttggaaggcctgcaagctaacagccatgcaggttagtcagggca
ctgaggactggcataaggacacatgggcactgaagatggagcaggaaacc
ttagtgcttgacctttggaggacaggaaaagaaggggagctctgagaaga
cgggagagaaggaagaggagcagctcaggcagggatctgaagggccagtg
acaaagcagacaccagatccccatgggaagtgcaagtatgttgagaaaaa
ctatgaaggtggtcataatggtaagcatttgaagttcagctcccacgagg
caagatctcaagagcccaagtaacagggtgccagatcttagcacaactga
ctccatgataggagtaccatccaggctctcacactcaaattcagcacaca
gtcagcactgtctaacaaaacaaaaaacaaaaacagaaaaacaatatccc
ctaaacacccaacaacaacaaaccccaaacaacaacaaaaaaaccccaaa
gacccaatcaatcaaaatccataggtctgagaaagtctttaaatgaacta
tccttgttgttttggcttttgtagttctgcttctggctaactattcttgt
taacagaatatatcaacccagaacatggtttttgtgcttaaaagctcatc
ccaaagaaggtttggtgttacactgggatcctgagcacccagtgtagcag
ccagctggctaataaagactttc
attctgtgttccagattagaagctgtggccctagctttgcctctggctga
ctacactgttaagcacagagaaagggggacccaagctctcacaccctcgg
ccccacagccctgcagcctccagtggccttccttgatctcttggttttcc
ctgtgttcttcaaattgcttgaggcatgtagcatgtgaggccaccacata
tcaagtatctcagacgtctccaaggtttgctcacacccagggaccgcagt
cctcagtcacacaaactcttttcttgctggaagataaagaaagcggccct
tgccaggacagggaaggtgggttggtgagcaaggggaggcgggggtgcca
ggacagggaagggggagtgggtgggtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_106050531_106051545
seq2: B6Ng01-169C15.b_44_1057 (reverse)

seq1  TATTAGCCAGCTGGCTGCTACACTGGGTGCTCAGGATCCCAGTGTAACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGCCAGCTGGCTGCTACACTGGGTGCTCAGGATCCCAGTGTAACAC  50

seq1  CAAACCTTCTTTGGGATGAGCTTTTAAGCACAAAAACCATGTTCTGGGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCTTCTTTGGGATGAGCTTTTAAGCACAAAAACCATGTTCTGGGTT  100

seq1  GATATATTTCTGTTAACAAGAATAGTTAGCCAGAAGCAGAACTACAAAAG  150
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GATATA-TTCTGTTAACAAGAATAGTTAGCCAGAAGCAGAACTACAAAAG  149

seq1  CCAAAACAACAAGGATAGTTCATTTAAAGACTTTCTCAGACCTATGGATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAACAACAAGGATAGTTCATTTAAAGACTTTCTCAGACCTATGGATT  199

seq1  TTGATTGATTGGGTCTTTGGGGTTTTTTTGTTGTTGTTTGGGGTTTGTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTGATTGGGTCTTTGGGGTTTTTTTGTTGTTGTTTGGGGTTTGTTG  249

seq1  TTGTTGGGTGTTTAGGGGATATTGTTTTTCTGTTTTTGTTTTTTGTTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGGGTGTTTAGGGGATATTGTTTTTCTGTTTTTGTTTTTTGTTTTG  299

seq1  TTAGACAGTGCTGACTGTGTGCTGAATTTGAGTGTGAGAGCCTGGATGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACAGTGCTGACTGTGTGCTGAATTTGAGTGTGAGAGCCTGGATGGT  349

seq1  ACTCCTATCATGGAGTCAGTTGTGCTAAGATCTGGCACCCTGTTACTTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTATCATGGAGTCAGTTGTGCTAAGATCTGGCACCCTGTTACTTGG  399

seq1  GCTCTTGAGATCTTGCCTCGTGGGAGCTGAACTTCAAATGCTTACCATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTGAGATCTTGCCTCGTGGGAGCTGAACTTCAAATGCTTACCATTA  449

seq1  TGACCACCTTCATAGTTTTTCTCAACATACTTGCACTTCCCATGGGGATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCACCTTCATAGTTTTTCTCAACATACTTGCACTTCCCATGGGGATC  499

seq1  TGGTGTCTGCTTTGTCACTGGCCCTTCAGATCCCTGCCTGAGCTGCTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTCTGCTTTGTCACTGGCCCTTCAGATCCCTGCCTGAGCTGCTCCT  549

seq1  CTTCCTTCTCTCCCGTCTTCTCAGAGCTCCCCTTCTTTTCCTGTCCTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTCTCTCCCGTCTTCTCAGAGCTCCCCTTCTTTTCCTGTCCTCCA  599

seq1  AAGGTCAAGCACTAAGGTTTCCTGCTCCATCTTCAGTGCCCATGTGTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCAAGCACTAAGGTTTCCTGCTCCATCTTCAGTGCCCATGTGTCCT  649

seq1  TATGCCAGTCCTCAGTGCCCTGACTAACCTGCATGGCTGTTAGCTTGCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCAGTCCTCAGTGCCCTGACTAACCTGCATGGCTGTTAGCTTGCAG  699

seq1  GCCTTCCAAGGGTGACTTGTAGGTTTCTGCCTCTGGCTGCCACCTCTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCCAAGGGTGACTTGTAGGTTTCTGCCTCTGGCTGCCACCTCTTTT  749

seq1  CTCCCTCCTAGCCCACCTGTCCTTCTGGGCATTTCTAGGTATCCTGTCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTCCTAGCCCACCTGTCCTTCTGGGCATTTCTAGGTATCCTGTCAT  799

seq1  CTCAAGCTTAAGGAGCAGAAAACAAATATCATAAACTCCCTACCTGCCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGCTTAAGGAGCAGAAAACAAATATCATAAACTCCCTACCTGCCCT  849

seq1  GTTGCTCTCATCTCCGCCTCCAGATTAAGGGTCACAGACCTATCACTGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTCTCATCTCCGCCTCCAGATTAAGGGTCACAGACCTATCACTGCT  899

seq1  CTTCCTTCTCTGATCCAAACACTTGCCTTGTCTGTCTCAGTAAGCCAGCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTCTCTGATCCAAACACTTGCCTTGTCTGTCTCAGTAAGCCAGCT  949

seq1  TCCTGGCTTTCCAGGTCCTCCATGAATTGAGCCTGATCTGTGTTTCCTGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGCTTTCCAGGTCCTCCATGAATTGAGCCTGATCTGTGTTTCCTGG  999

seq1  GATCCAAATGAATTC  1015
      |||||||||||||||
seq2  GATCCAAATGAATTC  1014

seq1: chr5_105923517_105923899
seq2: B6Ng01-169C15.g_67_449

seq1  GAATTCATTCTGTGTTCCAGATTAGAAGCTGTGGCCCTAGCTTTGCCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCTGTGTTCCAGATTAGAAGCTGTGGCCCTAGCTTTGCCTCT  50

seq1  GGCTGACTACACTGTTAAGCACAGAGAAAGGGGGACCCAAGCTCTCACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGACTACACTGTTAAGCACAGAGAAAGGGGGACCCAAGCTCTCACAC  100

seq1  CCTCGGCCCCACAGCCCTGCAGCCTCCAGTGGCCTTCCTTGATCTCTTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGGCCCCACAGCCCTGCAGCCTCCAGTGGCCTTCCTTGATCTCTTGG  150

seq1  TTTTCCCTGTGTTCTTCAAATTGCTTGAGGCATGTAGCATGTGAGGCCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCCTGTGTTCTTCAAATTGCTTGAGGCATGTAGCATGTGAGGCCAC  200

seq1  CACATATCAAGTATCTCAGACGTCTCCAAGGTTTGCTCACACCCAGGGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATATCAAGTATCTCAGACGTCTCCAAGGTTTGCTCACACCCAGGGAC  250

seq1  CGCAGTCCTCAGTCACACAAACTCTTTTCTTGCTGGAAGATAAAGAAAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGTCCTCAGTCACACAAACTCTTTTCTTGCTGGAAGATAAAGAAAGC  300

seq1  GGCCCTTGCCAGGACAGGGAAGGTGGGTTGGTGAGCAAGGGGAGGCGGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTTGCCAGGACAGGGAAGGTGGGTTGGTGAGCAAGGGGAGGCGGGG  350

seq1  GTGCCAGGACAGGGAAGGGGGAGTGGGTGGGTT  383
      |||||||||||||||||||||||||||||||||
seq2  GTGCCAGGACAGGGAAGGGGGAGTGGGTGGGTT  383