BAC Information

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BAC

Clone NameB6Ng01-169G21
Chromosome5 (Build37)
Map Location 14,670,754 - 14,811,425
singlet/doubletdoublet
Overlap genePclo
Upstream geneLOC208055, LOC626053, Speer3, EG626067, LOC668085, LOC384149, LOC384148, Sema3e, LOC100042957
Downstream geneENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-169G21.bB6Ng01-169G21.g
ACCDH960411DH960412
length1,178751
definitionDH960411|Mus musculus domesticus DNA, BAC clone: B6Ng01-169G21, 5' end.DH960412|Mus musculus domesticus DNA, BAC clone: B6Ng01-169G21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,810,225 - 14,811,425)(14,670,754 - 14,671,504)
sequence
gaattccttcacatttttactatgaatgaaaaaaatttactgggagaaac
atctccatgtttagactcagatagtatgtcattttcccacagtttttgtt
atttgcacagcgttacaacagtgccgtggcaaacaaaggggaatttggga
gactcagaaaatattttaggaaactctggtactagtgataacagaattaa
ataaattgggtaattgcttacctattactagtcaataaccagatagtctc
catagaagggaaatgcatgaccgaatagatagttcacatgtggcttgatc
aattctcctggtattttaatttctgatttcaatctaaaggtgtttctttc
ctttaggtattttgtaattgatatggggtcttgtttcagcattttcatga
gtttgagttttgtttgtatgagaccatgtgtccatagggacatttgtgct
gtactttatgcactaggagcatagccttcaaactgggcagaactctagcc
tgaagtgagtcagggaggggactgccatgcacaaagaaggaagagaagaa
agacagtgttggctcacactttgtgaggagggcattattaatttgaagtt
cttgatgttcatcccttgccagagagagtgactttttttcctttctgatc
tatatatactcactctgtagatacgctaaatctgagcttttgtgtgtgaa
acaatgtcatcactaatgatgagtttttaaagatggagatgaaaagtgat
ataatacaggatcccagttgtttgtaaccttcctccagtgctcttaattg
gcaaactcccagctcttctttcttgggatttacagtctctgactgttcac
tggtgtctttcagcttacctggtctttgacaatgaagttatttgggttct
aagcatagatgtgttagaagctacaagattaacatctttttcctctataa
gcatagccctggttccatcaatatagttcctggagtggatgccaataggt
gaaaggttaacaatcattttatattgtgcagtatattgtatatttctaat
aatatatatggacatggatggattctagcctggaacttcttactgtaagg
tcaatacatggaaacttaagatgcctaggaactgatacgggaggggacca
ttgcagctgatggtagcttacctctaca
gaattccattgtggggtttgcatctttctgtgcttggacacacatatcca
ctttctctctctctctctctctctctctctctctctctctctctccctcc
ttctttctttctttctttctttctttctttctttctttctttctttcttt
ctttctttctttctccagtctccaaattatttttttgagtatcccttttt
ttctatccagaggagtcatacgaaaaacccttaaattcacatgtgtatat
gtgtctctatttttgagttttagaactatgttttcatgtaccaaaggatg
tagctcttcaaacctcactgtaaattcaagctcaacatgtttggctatta
atctttttctatagaacccatccctacttttggctttctgtattaacagc
agcaacatggacccacctttttcttttttctttccatacactaagctgaa
gcaagtggggttcctttttctctctacctttgtcctccataccacattga
tcataataaggacatccctctgcttactgcttccttgggctcctggattt
gctcttttcacaatggttatagttgcagatttcatcaagttcttctgaaa
ctgtcagatagcccatttcttaattttcatggttctaccttggtatgatc
catgacaaatgcttgtagcaatatagaagtaccagttccctagtgatatc
cttgtgagttctttgcatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_14810225_14811425
seq2: B6Ng01-169G21.b_48_1225 (reverse)

seq1  TGTAGAGGTAAAGCTAAACACTTTACCA-GACCTGACAATAGCTACCCTA  49
      ||||||||| ||||         |||||  | ||| |||| | | |||| 
seq2  TGTAGAGGT-AAGC---------TACCATCAGCTG-CAAT-GGTCCCCT-  37

seq1  CCTGTCATCAGTTTCCTAGGCAATTTCTTTAAGTTTTCATTGTATTTGAC  99
      || || ||||| ||||||||||   || |||||||| || |||| |||||
seq2  CCCGT-ATCAG-TTCCTAGGCA---TC-TTAAGTTTCCA-TGTA-TTGAC  79

seq1  TTTACCAGTTAGAGGTTTTCAAGGCTAAGAAT-CAT-CATGTTCATATAT  147
       ||| |||| ||| |  ||| ||||| ||||| ||| ||||| |||||||
seq2  CTTA-CAGTAAGAAG--TTCCAGGCT-AGAATCCATCCATGTCCATATAT  125

seq1  ATTATTAAGAAATATACAATTATACTGCACAATATAAAATGATTGTTAAC  197
      |||||| |||||||||||| ||||||||||||||||||||||||||||||
seq2  ATTATT-AGAAATATACAA-TATACTGCACAATATAAAATGATTGTTAAC  173

seq1  CTTTCACCTATTGGCATTCAACTCAGAGACTATATTGATGGAA-CAGGGC  246
      ||||||||||||||||| ||   |||  ||||||||||||||| ||||||
seq2  CTTTCACCTATTGGCATCCACTCCAGGAACTATATTGATGGAACCAGGGC  223

seq1  TATGCTTATAGAGGAAAAAGATGTTAATCTTGTAGCTTCTAACACATCTA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTTATAGAGGAAAAAGATGTTAATCTTGTAGCTTCTAACACATCTA  273

seq1  TGCTTAGAACCCAAATAACTTCATTGTCAAAGACCAGGTAAGCTGAAAGA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTAGAACCCAAATAACTTCATTGTCAAAGACCAGGTAAGCTGAAAGA  323

seq1  CACCAGTGAACAGTCAGAGACTGTAAATCCCAAGAAAGAAGAGCTGGGAG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGTGAACAGTCAGAGACTGTAAATCCCAAGAAAGAAGAGCTGGGAG  373

seq1  TTTGCCAATTAAGAGCACTGGAGGAAGGTTACAAACAACTGGGATCCTGT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCAATTAAGAGCACTGGAGGAAGGTTACAAACAACTGGGATCCTGT  423

seq1  ATTATATCACTTTTCATCTCCATCTTTAAAAACTCATCATTAGTGATGAC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATCACTTTTCATCTCCATCTTTAAAAACTCATCATTAGTGATGAC  473

seq1  ATTGTTTCACACACAAAAGCTCAGATTTAGCGTATCTACAGAGTGAGTAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTCACACACAAAAGCTCAGATTTAGCGTATCTACAGAGTGAGTAT  523

seq1  ATATAGATCAGAAAGGAAAAAAAGTCACTCTCTCTGGCAAGGGATGAACA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGATCAGAAAGGAAAAAAAGTCACTCTCTCTGGCAAGGGATGAACA  573

seq1  TCAAGAACTTCAAATTAATAATGCCCTCCTCACAAAGTGTGAGCCAACAC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAACTTCAAATTAATAATGCCCTCCTCACAAAGTGTGAGCCAACAC  623

seq1  TGTCTTTCTTCTCTTCCTTCTTTGTGCATGGCAGTCCCCTCCCTGACTCA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTCTTCTCTTCCTTCTTTGTGCATGGCAGTCCCCTCCCTGACTCA  673

seq1  CTTCAGGCTAGAGTTCTGCCCAGTTTGAAGGCTATGCTCCTAGTGCATAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGGCTAGAGTTCTGCCCAGTTTGAAGGCTATGCTCCTAGTGCATAA  723

seq1  AGTACAGCACAAATGTCCCTATGGACACATGGTCTCATACAAACAAAACT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACAGCACAAATGTCCCTATGGACACATGGTCTCATACAAACAAAACT  773

seq1  CAAACTCATGAAAATGCTGAAACAAGACCCCATATCAATTACAAAATACC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTCATGAAAATGCTGAAACAAGACCCCATATCAATTACAAAATACC  823

seq1  TAAAGGAAAGAAACACCTTTAGATTGAAATCAGAAATTAAAATACCAGGA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGAAAGAAACACCTTTAGATTGAAATCAGAAATTAAAATACCAGGA  873

seq1  GAATTGATCAAGCCACATGTGAACTATCTATTCGGTCATGCATTTCCCTT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGATCAAGCCACATGTGAACTATCTATTCGGTCATGCATTTCCCTT  923

seq1  CTATGGAGACTATCTGGTTATTGACTAGTAATAGGTAAGCAATTACCCAA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGAGACTATCTGGTTATTGACTAGTAATAGGTAAGCAATTACCCAA  973

seq1  TTTATTTAATTCTGTTATCACTAGTACCAGAGTTTCCTAAAATATTTTCT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTAATTCTGTTATCACTAGTACCAGAGTTTCCTAAAATATTTTCT  1023

seq1  GAGTCTCCCAAATTCCCCTTTGTTTGCCACGGCACTGTTGTAACGCTGTG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTCCCAAATTCCCCTTTGTTTGCCACGGCACTGTTGTAACGCTGTG  1073

seq1  CAAATAACAAAAACTGTGGGAAAATGACATACTATCTGAGTCTAAACATG  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAACAAAAACTGTGGGAAAATGACATACTATCTGAGTCTAAACATG  1123

seq1  GAGATGTTTCTCCCAGTAAATTTTTTTCATTCATAGTAAAAATGTGAAGG  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGTTTCTCCCAGTAAATTTTTTTCATTCATAGTAAAAATGTGAAGG  1173

seq1  AATTC  1201
      |||||
seq2  AATTC  1178

seq1: chr5_14670754_14671504
seq2: B6Ng01-169G21.g_68_818

seq1  GAATTCCATTGTGGGGTTTGCATCTTTCTGTGCTTGGACACACATATCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTGTGGGGTTTGCATCTTTCTGTGCTTGGACACACATATCCA  50

seq1  CTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCC  100

seq1  TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT  150

seq1  CTTTCTTTCTTTCTCCAGTCTCCAAATTATTTTTTTGAGTATCCCTTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTCTTTCTCCAGTCTCCAAATTATTTTTTTGAGTATCCCTTTTT  200

seq1  TTCTATCCAGAGGAGTCATACGAAAAACCCTTAAATTCACATGTGTATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATCCAGAGGAGTCATACGAAAAACCCTTAAATTCACATGTGTATAT  250

seq1  GTGTCTCTATTTTTGAGTTTTAGAACTATGTTTTCATGTACCAAAGGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTCTATTTTTGAGTTTTAGAACTATGTTTTCATGTACCAAAGGATG  300

seq1  TAGCTCTTCAAACCTCACTGTAAATTCAAGCTCAACATGTTTGGCTATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCTTCAAACCTCACTGTAAATTCAAGCTCAACATGTTTGGCTATTA  350

seq1  ATCTTTTTCTATAGAACCCATCCCTACTTTTGGCTTTCTGTATTAACAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTTCTATAGAACCCATCCCTACTTTTGGCTTTCTGTATTAACAGC  400

seq1  AGCAACATGGACCCACCTTTTTCTTTTTTCTTTCCATACACTAAGCTGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACATGGACCCACCTTTTTCTTTTTTCTTTCCATACACTAAGCTGAA  450

seq1  GCAAGTGGGGTTCCTTTTTCTCTCTACCTTTGTCCTCCATACCACATTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTGGGGTTCCTTTTTCTCTCTACCTTTGTCCTCCATACCACATTGA  500

seq1  TCATAATAAGGACATCCCTCTGCTTACTGCTTCCTTGGGCTCCTGGATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAATAAGGACATCCCTCTGCTTACTGCTTCCTTGGGCTCCTGGATTT  550

seq1  GCTCTTTTCACAATGGTTATAGTTGCAGATTTCATCAAGTTCTTCTGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTTTCACAATGGTTATAGTTGCAGATTTCATCAAGTTCTTCTGAAA  600

seq1  CTGTCAGATAGCCCATTTCTTAATTTTCATGGTTCTACCTTGGTATGATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCAGATAGCCCATTTCTTAATTTTCATGGTTCTACCTTGGTATGATC  650

seq1  CATGACAAATGCTTGTAGCAATATAGAAGTACCAGTTCCCTAGTGATATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACAAATGCTTGTAGCAATATAGAAGTACCAGTTCCCTAGTGATATC  700

seq1  CTTGTGAGTTCTTTGCATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGAGTTCTTTGCATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  750

seq1  G  751
      |
seq2  G  751