BAC Information

Click to search

BAC

Clone NameB6Ng01-169M05
Chromosome5 (Build37)
Map Location 59,353,164 - 59,493,295
singlet/doubletdoublet
Overlap geneLOC666499, EG625870
Upstream geneLOC100041385, LOC100041396
Downstream geneLOC100041425, LOC546866
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-169M05.bB6Ng01-169M05.g
ACCDH960651DH960652
length1,141920
definitionDH960651|Mus musculus domesticus DNA, BAC clone: B6Ng01-169M05, 5' end.DH960652|Mus musculus domesticus DNA, BAC clone: B6Ng01-169M05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,353,164 - 59,354,312)(59,492,376 - 59,493,295)
sequence
gaattcaagagggcttgaatattttagttttcatagtgtagatcttgaac
tcctttccatagacaacaacaaaggtaggaatgcaaagaattatctcata
tctcttttgatcaatataaatttgtcattaaatatgaaagaatgaatgag
caaaatgtactgtcagcatacatttccatatataggaaagttttgaataa
gagttaagaaaccatggtctataattctgtgctactatgaaacagaatga
ggtgaaatcagtaacttacctagggtttttcatgaagaagataccaatgg
ctctgatatcctggtaagccagtatttttttgcttaggctaaaatactaa
atgttttagaaaaactctctgatcatatacaaaacaaacaaacaaacaaa
aactacatacaaaaaaaaaaaaggtacttgcagtttaggtattagttcag
ccaccacagagttcaatcacacagaaaagaactatgcatattcaagtcat
atccacagaaaaacaatttagttctacccccactatggaggatggcccaa
gagatgatatcttgatgaatgagtaatgttagtgttaacataagaaagga
tctcacagatgtgctttcaagcagcactggctaaaacaaggctaccaagg
accaagccatacattccaagaaaagccagaacaagtaatcaaataaataa
aatttcacagcaggaaaagaagagattttaatacacatgttcaaagctgg
ctctgaattagctaatgagagaacagcaaaagccaacctgaacattcaca
ttctaagggctcttattaaaggagatattggaaaaagtatcttttccttt
atactcattgtctaggtgggtgaaagaagttccatgagtaggacgacact
atggatgatagaatttctggcacagcttgacatacacacactcatgtgcg
cgcgctgccaccaccacacacatacacactcacactccaccgccacacac
ctcacacacaccatacatcttacacaagaaccaacacgaatcagatcata
ttctggttgataagaaggaacatggtgccttcctttttccaaaatcagaa
tgacctgcagcaggcaagaatttggggaataataacctgcc
gaattcttcccaaatctaggaaatttgttttctttcctcctttcattgtt
ctaaaatcatttacagttccttaattacaaaatcattaattcttgaaaat
tctgagtcaaaaagtaatgatttgcccaactgttatatatcttagccaga
aatcatgggagcctattggccactaatacatttttttttaattttttttt
tagaaagacatctcacaaaataacagtttgcttactatttagatcagttg
ccgatctgggctacttttgcttccttgtaaaaaagacttcattaagaaat
gctttcttaatcttaattttaataaaatattttcagagaaaagatattca
aaatagtttctcaaatagaattcatgttttctctagcagctgggatacac
tgagtcaaacaggaagtttgtttggcttttaagtcagcaattcatttaca
ctaatcataaatactattaagtaaagatacaatgttttaatctttgatgt
tgttttgggggaaacacatttgtaaatttagcaaacactttcaaagacat
ttaagtttcattaaatttataaaataaaatgatgtcccttaaactaagtc
cattatcatttctagagaaacattttaattctatagcaaaggtgaaggtt
gatgcccaatacaattctgtttagcatgtagtttacacatctaatgtcgt
gttttataaaaaggaaaagaaaccaaagatatgtttggtggaagtgcaat
gtgggggaagagggtgactctgcaggcccatgctgaggtaccagctacat
gatggtatagtatagtataatatagcagagtataggatagaatagaattt
atttagtcattggaagagagattgagggaatagagacagagaaagggagg
gagtagtgagtgagggagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_59353164_59354312
seq2: B6Ng01-169M05.b_45_1185

seq1  GAATTCAAGAGGGCTTGAATATTTTAGTTTTCATAGTGTAGATCTTGAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGAGGGCTTGAATATTTTAGTTTTCATAGTGTAGATCTTGAAC  50

seq1  TCCTTTCCATAGACAACAACAAAGGTAGGAATGCAAAGAATTATCTCATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCCATAGACAACAACAAAGGTAGGAATGCAAAGAATTATCTCATA  100

seq1  TCTCTTTTGATCAATATAAATTTGTCATTAAATATGAAAGAATGAATGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTTGATCAATATAAATTTGTCATTAAATATGAAAGAATGAATGAG  150

seq1  CAAAATGTACTGTCAGCATACATTTCCATATATAGGAAAGTTTTGAATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATGTACTGTCAGCATACATTTCCATATATAGGAAAGTTTTGAATAA  200

seq1  GAGTTAAGAAACCATGGTCTATAATTCTGTGCTACTATGAAACAGAATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTAAGAAACCATGGTCTATAATTCTGTGCTACTATGAAACAGAATGA  250

seq1  GGTGAAATCAGTAACTTACCTAGGGTTTTTCATGAAGAAGATACCAATGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAAATCAGTAACTTACCTAGGGTTTTTCATGAAGAAGATACCAATGG  300

seq1  CTCTGATATCCTGGTAAGCCAGTATTTTTTTGCTTAGGCTAAAATACTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGATATCCTGGTAAGCCAGTATTTTTTTGCTTAGGCTAAAATACTAA  350

seq1  ATGTTTTAGAAAAACTCTCTGATCATATACAAAACAAACAAACAAACAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTTAGAAAAACTCTCTGATCATATACAAAACAAACAAACAAACAAA  400

seq1  AACTACATACAAAAAAAAAAAAGGTACTTGCAGTTTAGGTATTAGTTCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACATACAAAAAAAAAAAAGGTACTTGCAGTTTAGGTATTAGTTCAG  450

seq1  CCACCACAGAGTTCAATCACACAGAAAAGAACTATGCATATTCAAGTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCACAGAGTTCAATCACACAGAAAAGAACTATGCATATTCAAGTCAT  500

seq1  ATCCACAGAAAAACAATTTAGTTCTACCCCCACTATGGAGGATGGCCCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACAGAAAAACAATTTAGTTCTACCCCCACTATGGAGGATGGCCCAA  550

seq1  GAGATGATATCTTGATGAATGAGTAATGTTAGTGTTAACATAAGAAAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGATATCTTGATGAATGAGTAATGTTAGTGTTAACATAAGAAAGGA  600

seq1  TCTCACAGATGTGCTTTCAAGCAGCACTGGCTAAAACAAGGCTACCAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACAGATGTGCTTTCAAGCAGCACTGGCTAAAACAAGGCTACCAAGG  650

seq1  ACCAAGCCATACATTCCAAGAAAAGCCAGAACAAGTAATCAAATAAATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGCCATACATTCCAAGAAAAGCCAGAACAAGTAATCAAATAAATAA  700

seq1  AATTTCACAGCAGGAAAAGAAGAGATTTTAATACACATGTTCAAAGCTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCACAGCAGGAAAAGAAGAGATTTTAATACACATGTTCAAAGCTGG  750

seq1  CTCTGAATTAGCTAATGAGAGAACAGCAAAAGCCAACCTGAACATTCACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAATTAGCTAATGAGAGAACAGCAAAAGCCAACCTGAACATTCACA  800

seq1  TTCTAAGGGCTCTTATTAAAGGAGATATTGGAAAAAGTATCTTTTCCTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAGGGCTCTTATTAAAGGAGATATTGGAAAAAGTATCTTTTCCTTT  850

seq1  ATACTCATTGTCTAGGTGGGTGAAAGAAGTTCCATGAGTAGGACGACACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCATTGTCTAGGTGGGTGAAAGAAGTTCCATGAGTAGGACGACACT  900

seq1  ATGGATGATAGAATTTCTGGCACAGCTTGACATACACACACTCATGTGCG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATGATAGAATTTCTGGCACAGCTTGACATACACACACTCATGTGCG  950

seq1  CGCGCCTGCACACACACACACACACATACACACACACACACACACACACA  1000
      |||| |||| ||| ||| ||||||||||||||| ||||| |   |||   
seq2  CGCG-CTGC-CAC-CAC-CACACACATACACACTCACACTC---CACCGC  993

seq1  CACACACACACACACACACACACACACACTTACAC-AGACACAACACGGA  1049
      ||||||| | ||||||||| || |||  ||||||| |||  |||||| ||
seq2  CACACAC-CTCACACACAC-CATACA-TCTTACACAAGAACCAACAC-GA  1039

seq1  TTCAGATCATATCCT-GTTGATAAG-AGGAACAT-GTG-CTTCCTTTTTC  1095
       ||||||||||| || ||||||||| |||||||| ||| |||||||||||
seq2  ATCAGATCATATTCTGGTTGATAAGAAGGAACATGGTGCCTTCCTTTTTC  1089

seq1  CCAGATCAGGATGAGCCTGGAAGGCAGGGAAGGATTTGGGG-ATGATAAC  1144
      | | ||||| |||| |||| |  ||||| ||| |||||||| || |||||
seq2  CAAAATCAGAATGA-CCTGCA--GCAGGCAAGAATTTGGGGAATAATAAC  1136

seq1  CTGCC  1149
      |||||
seq2  CTGCC  1141

seq1: chr5_59492376_59493295
seq2: B6Ng01-169M05.g_70_989 (reverse)

seq1  CTCTCCCTCACTCACTCCTCCCTCCCTTTCTCTGTCTCTATTCCCTCAAT  50
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CTCTCCCTCACTCACTACTCCCTCCCTTTCTCTGTCTCTATTCCCTCAAT  50

seq1  CTCTCTTCCAATGACTAAATAAATTCTATTCTATCCTATACTCTGCTATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTCCAATGACTAAATAAATTCTATTCTATCCTATACTCTGCTATA  100

seq1  TTATACTATACTATACCATCATGTAGCTGGTACCTCAGCATGGGCCTGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACTATACTATACCATCATGTAGCTGGTACCTCAGCATGGGCCTGCA  150

seq1  GAGTCACCCTCTTCCCCCACATTGCACTTCCACCAAACATATCTTTGGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCACCCTCTTCCCCCACATTGCACTTCCACCAAACATATCTTTGGTT  200

seq1  TCTTTTCCTTTTTATAAAACACGACATTAGATGTGTAAACTACATGCTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCCTTTTTATAAAACACGACATTAGATGTGTAAACTACATGCTAA  250

seq1  ACAGAATTGTATTGGGCATCAACCTTCACCTTTGCTATAGAATTAAAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAATTGTATTGGGCATCAACCTTCACCTTTGCTATAGAATTAAAATG  300

seq1  TTTCTCTAGAAATGATAATGGACTTAGTTTAAGGGACATCATTTTATTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTAGAAATGATAATGGACTTAGTTTAAGGGACATCATTTTATTTT  350

seq1  ATAAATTTAATGAAACTTAAATGTCTTTGAAAGTGTTTGCTAAATTTACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATTTAATGAAACTTAAATGTCTTTGAAAGTGTTTGCTAAATTTACA  400

seq1  AATGTGTTTCCCCCAAAACAACATCAAAGATTAAAACATTGTATCTTTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGTTTCCCCCAAAACAACATCAAAGATTAAAACATTGTATCTTTAC  450

seq1  TTAATAGTATTTATGATTAGTGTAAATGAATTGCTGACTTAAAAGCCAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAGTATTTATGATTAGTGTAAATGAATTGCTGACTTAAAAGCCAAA  500

seq1  CAAACTTCCTGTTTGACTCAGTGTATCCCAGCTGCTAGAGAAAACATGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTTCCTGTTTGACTCAGTGTATCCCAGCTGCTAGAGAAAACATGAA  550

seq1  TTCTATTTGAGAAACTATTTTGAATATCTTTTCTCTGAAAATATTTTATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATTTGAGAAACTATTTTGAATATCTTTTCTCTGAAAATATTTTATT  600

seq1  AAAATTAAGATTAAGAAAGCATTTCTTAATGAAGTCTTTTTTACAAGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTAAGATTAAGAAAGCATTTCTTAATGAAGTCTTTTTTACAAGGAA  650

seq1  GCAAAAGTAGCCCAGATCGGCAACTGATCTAAATAGTAAGCAAACTGTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAGTAGCCCAGATCGGCAACTGATCTAAATAGTAAGCAAACTGTTA  700

seq1  TTTTGTGAGATGTCTTTCTAAAAAAAAAATTAAAAAAAAATGTATTAGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTGAGATGTCTTTCTAAAAAAAAAATTAAAAAAAAATGTATTAGTG  750

seq1  GCCAATAGGCTCCCATGATTTCTGGCTAAGATATATAACAGTTGGGCAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAATAGGCTCCCATGATTTCTGGCTAAGATATATAACAGTTGGGCAAA  800

seq1  TCATTACTTTTTGACTCAGAATTTTCAAGAATTAATGATTTTGTAATTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTACTTTTTGACTCAGAATTTTCAAGAATTAATGATTTTGTAATTAA  850

seq1  GGAACTGTAAATGATTTTAGAACAATGAAAGGAGGAAAGAAAACAAATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTGTAAATGATTTTAGAACAATGAAAGGAGGAAAGAAAACAAATTT  900

seq1  CCTAGATTTGGGAAGAATTC  920
      ||||||||||||||||||||
seq2  CCTAGATTTGGGAAGAATTC  920