BAC Information

Click to search

BAC

Clone NameB6Ng01-169M10
Chromosome5 (Build37)
Map Location 95,713,760 - 95,714,850
singlet/doubletsinglet
Overlap geneLOC100041296
Upstream geneLOC100041042, LOC624421, AA792892, LOC665521, LOC665551, LOC100041102, LOC665560, LOC100041115, LOC624507, LOC621203, LOC100041153, LOC665499, LOC624698, LOC100041179, LOC624655, LOC100041166, LOC665469, LOC622894, EG666121, LOC666125, EG666133, LOC100041253, LOC100041264, EG624049
Downstream geneEG666159, LOC666164, EG666169, D5Ertd577e, LOC100041354, LOC100040503, LOC666187, EG622731, LOC100041380, EG666203, EG666209, LOC665943, LOC433921, Cxcl13, EG666231, Cnot6l, LOC100040559, Mrpl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-169M10.bB6Ng01-169M10.g
ACCDH960661DH960662
length8801,073
definitionDH960661|Mus musculus domesticus DNA, BAC clone: B6Ng01-169M10, 5' end.DH960662|Mus musculus domesticus DNA, BAC clone: B6Ng01-169M10, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaacagaggaatatttaatgactgagaagcatttacagaaatg
ttcaacatccttagtcatcagggaaatccaaatcaaaatgactctgggat
ttcattttactcccattaaaagggaaacagttcatggtgactaggatgta
gaacatggtgaacactctcttcctttgctagtaggagtgcaaacttgtac
actcagtctggaaatcaattcagtgctttctcaaataactgtaaatggtt
ctctcaggactatttataccatccctggtcatatacttaaaagatgcttc
actataccataagaacagtgttttaactatgctcatagttttatttgtaa
tagccataatcttaaaatgaccaaaatgtccctcaagtgaacatttacac
aacagaatactactaactggttaaaaacaatgacatcatgaaattagtag
gccaaacccagacccagaaagataaacgtggtgtgtactcataagtggat
attagtaagaaagaataggataaccatgctatccatagagcaaagaaact
gacaaggaaggcctggcagaggatgcttgaatcttactatggacagaaat
aaagtacacatcaggggtagatggatggagggtacgatgtgtgagagaaa
ttctggatggtaatcagaggaatcatatgtggggagtgtgaagggagaaa
ggagtggaatctgtggttgtggagaatctctgagataagctagaaactca
tataatggaaattcccaggatctatgagagtgaccctagcaatgactttc
ttgcaataggacatatggaacatgaaccaatcacctcctgtaactaggca
agactttctttttgttgttgttatgtttta
gaattcagtagcattctatctacttatctaattcctaatataaaaaatca
aaaaacttcctcttgatagggagctagagtccctgagcactttccttttg
atgtctcttgacctcatcttatccctgatcaggaaaggaacaaaaccgtt
caaaataattaaataaaaatcaaaataataaaaaaacctgaacaatttct
atagtatagtctttacgcatatcttgatcagagaagagaaagaaacaatg
tacagagggagagaaataagaactaaatataaccttacctatttatgtct
tagggaaatgtctgactgaaacaacattctttgtgtaattgacatatact
aattatcagttataagtacatactaactaaaggcaccaagcttcaatcca
atgttcagaactttgtcttatatcaaaataattgcatatttcatgactat
ttagtgtaattataagtggttcatgagaatatatgttgctaacatgtttc
aggaaaaacttgtttctgttcagtttgtggtgggcaaagtttaaatgcta
acatgtctagctccctgtttctcatttctttttgttttcattaattcatt
tatgtattcactttatcacctgatcactttctgcctgtcttttcatccca
gttctaccctctgaccttttcatctcatttctttctgccattgtcctcag
caaaggagaggcacacactccccacccctaccaggttccacaccactttg
acacaccacgttgcatcacgactaaatgcatcctcacccactgaagccag
acaagtcagcccatcaaggggaaaaggttccaaaagcagagaacaaagtt
caaaaggagaaaacacccagtctgatttttaggagaccctgatttagacc
aaatttcacatctgttccatatgagtagaggcctaggtcagaccatgcat
gctctttgatcgtagttcagtctgtgtgaactccatggttccacatgact
agtatgtagtctcttctgatgctgactctgttgtaagctctgatgacctt
agctatgtgacctcgagtgaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_95713760_95714850
seq2: B6Ng01-169M10.g_66_1138

seq1  GAATTCAGTAGCATTCTATCTACTTATCTAATTCCTAATATAAAAAATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTAGCATTCTATCTACTTATCTAATTCCTAATATAAAAAATCA  50

seq1  AAAAACTTCCTCTTGATAGGGAGCTAGAGTCCCTGAGCACTTTCCTTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTTCCTCTTGATAGGGAGCTAGAGTCCCTGAGCACTTTCCTTTTG  100

seq1  ATGTCTCTTGACCTCATCTTATCCCTGATCAGGAAAGGAACAAAACCGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTCTTGACCTCATCTTATCCCTGATCAGGAAAGGAACAAAACCGTT  150

seq1  CAAAATAATTAAATAAAAATCAAAATAATAAAAAAACCTGAACAATTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATAATTAAATAAAAATCAAAATAATAAAAAAACCTGAACAATTTCT  200

seq1  ATAGTATAGTCTTTACGCATATCTTGATCAGAGAAGAGAAAGAAACAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTATAGTCTTTACGCATATCTTGATCAGAGAAGAGAAAGAAACAATG  250

seq1  TACAGAGGGAGAGAAATAAGAACTAAATATAACCTTACCTATTTATGTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAGGGAGAGAAATAAGAACTAAATATAACCTTACCTATTTATGTCT  300

seq1  TAGGGAAATGTCTGACTGAAACAACATTCTTTGTGTAATTGACATATACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGAAATGTCTGACTGAAACAACATTCTTTGTGTAATTGACATATACT  350

seq1  AATTATCAGTTATAAGTACATACTAACTAAAGGCACCAAGCTTCAATCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATCAGTTATAAGTACATACTAACTAAAGGCACCAAGCTTCAATCCA  400

seq1  ATGTTCAGAACTTTGTCTTATATCAAAATAATTGCATATTTCATGACTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCAGAACTTTGTCTTATATCAAAATAATTGCATATTTCATGACTAT  450

seq1  TTAGTGTAATTATAAGTGGTTCATGAGAATATATGTTGCTAACATGTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGTAATTATAAGTGGTTCATGAGAATATATGTTGCTAACATGTTTC  500

seq1  AGGAAAAACTTGTTTCTGTTCAGTTTGTGGTGGGCAAAGTTTAAATGCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAAACTTGTTTCTGTTCAGTTTGTGGTGGGCAAAGTTTAAATGCTA  550

seq1  ACATGTCTAGCTCCCTGTTTCTCATTTCTTTTTGTTTTCATTAATTCATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTCTAGCTCCCTGTTTCTCATTTCTTTTTGTTTTCATTAATTCATT  600

seq1  TATGTATTCACTTTATCACCTGATCACTTTCTGCCTGTCTTTTCATCCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATTCACTTTATCACCTGATCACTTTCTGCCTGTCTTTTCATCCCA  650

seq1  GTTCTACCCTCTGACCTTTTCATCTCATTTCTTTCTGCCATTGTCCTCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTACCCTCTGACCTTTTCATCTCATTTCTTTCTGCCATTGTCCTCAG  700

seq1  CAAAGGAGAGGCACACACTCCCCACCCCTACCAGGTTCCACACCACTTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGAGAGGCACACACTCCCCACCCCTACCAGGTTCCACACCACTTTG  750

seq1  ACACACCACGTTGCATCAGGACTAAATGCATCCTCACCCACTGAAGCCAG  800
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ACACACCACGTTGCATCACGACTAAATGCATCCTCACCCACTGAAGCCAG  800

seq1  ACAAGTCAGCCCATCAAGGGGAAAAGGTTCCAAAAGCAGAGAACAAAGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTCAGCCCATCAAGGGGAAAAGGTTCCAAAAGCAGAGAACAAAGTT  850

seq1  CAAAAGGAGAAAACACCCAGTCTGATTTTTAGGAGACCCTGATTTAAGAC  900
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CAAAAGGAGAAAACACCCAGTCTGATTTTTAGGAGACCCTGATTT-AGAC  899

seq1  CAAATTTCACATCTGTTCCATATGAGTAGGAGGCCTAGGTCCAGACCATG  950
      |||||||||||||||||||||||||||| ||||||||||| |||||||||
seq2  CAAATTTCACATCTGTTCCATATGAGTA-GAGGCCTAGGT-CAGACCATG  947

seq1  CATGCTCTTTGATCGGTAGTTCAGTCTGTGTGAACTCCCAATGGGTCCAC  1000
      |||||||||||||| |||||||||||||||||||||||  |||| |||||
seq2  CATGCTCTTTGATC-GTAGTTCAGTCTGTGTGAACTCC--ATGGTTCCAC  994

seq1  ATGACTTAGTTATGTAGGTCTCCTTCTGGAATGCTTGACTCTGTTGTAAA  1050
      ||||| ||| |||||| |||| ||||||  |||| |||||||||||| ||
seq2  ATGAC-TAG-TATGTA-GTCT-CTTCTG--ATGC-TGACTCTGTTGT-AA  1036

seq1  GCTCTGATGACCCTTAGCTAATGGGGACCCTCGAGTGAAGA  1091
      |||||||||| |||||||| ||| |   |||||||||||||
seq2  GCTCTGATGA-CCTTAGCT-ATGTG--ACCTCGAGTGAAGA  1073