BAC Information

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BAC

Clone NameB6Ng01-169O23
Chromosome5 (Build37)
Map Location 34,438,059 - 34,647,214
singlet/doubletdoublet
Overlap genePoln, BC023882, Mxd4, Zfyve28
Upstream geneSlc5a1, Spon2, Ctbp1, Maea, 4933407H18Rik, LOC672284, 2410018C17Rik, Slbp, Tmem129, Tacc3, Fgfr3, Letm1, LOC100040332, Whsc1, Whsc2, Gm1673, LOC100040427, Nat8l
Downstream geneEG433874, A830049F12Rik, LOC100040061, Rnf4, BC037112, LOC100040480, Tnip2, Sh3bp2, Add1, 0610009O03Rik, Nol14, Gprk2l, Hdh, A930005I04Rik, Rgs12, Hgfac, Dok7, Lrpap1, Adra2c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-169O23.bB6Ng01-169O23.g
ACCDH960779DH960780
length6501,036
definitionDH960779|Mus musculus domesticus DNA, BAC clone: B6Ng01-169O23, 5' end.DH960780|Mus musculus domesticus DNA, BAC clone: B6Ng01-169O23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,438,059 - 34,438,708)(34,646,163 - 34,647,214)
sequence
gaattccagagggaatctgagagggatatgaaagggaaataggaagtgag
aatgataaaaaaaaatacatcatatacggtatgaattatctaacaataaa
taaataagaggcatctcctgagtaggtaagtgtgaagggttgactgtgag
gcctcccagatggtagagctattgcagaagttgtgcaaatcagagagcag
agctttactagggagcaatgtgcactctttctttccctccctcccacctt
ctctcttccttcctccctccctccctttctctattctccctttcttcctc
cctctcctcctctctccttcctttcctccctccctccacctccacctcag
gatcaactatagaactgatgatgggaagtggactcttcatccactgctgg
taagaatgtcaagtggcatcgcttcttggtcttttggctaagatcaagtg
aagaatgtctaccccttaagaactgaagcacaatcacatggctcaggcct
ttaatcccagcactaaggaagcagaggcaagagatccgcccttagatcag
ctaagacatggtgattactgtctctcaaaagaagaagaagaaggagaagg
agaaggagaaggagaaggagaaggagaaggagaagaagaggaggaggagg

gaattcctgaaggttctttgatacagaccttccaaaagcaatcagaaggg
acagccgaaagctagggttgcatttatgccattatcttgtttgcaagacc
aaggaccacatgtctgaggccaggacagctctgtagtgatacacaacttg
ccgctcatgcttggaagcaggagatgtatttgggggatgactttggaagt
gcatgaccaccgagagggcagtgctgagcgaggctatgaccgtcccatgc
cttccagggcaagcactgtccttaccagcctctagcttccttgtggccta
gaacaccattcttcacagaggctactaaggcctccttctagagctttcta
cagctccccacgtggcagcctgcccactgtcctcacttattcctgtggcc
tctcttaccttcttgtcccttgcccatggccagtgtcctttcaccttttt
aaatctctcagctgtcaaccttggcccctgaaggtgaaactggcctctac
agctgccatctggggttcccacctctttcaggctggctcaatccaatttg
ggcatatcctttttttttttttttcctcttcccttcctattctctcattc
cttctcacacgttcacatcagcatcttagcagggtcagggtcacctttct
ccatgggatgtggtgggacagtgctattagagaccctgcaagagtaggga
atagggctccctgtgggtctaaagaagctctctgatttgggaggagggct
aggagatggttctcctagagcttgtactgcttttataaaagaccagagtt
cggttcccagaaccccggtcaagtggttcacaatgacctgtaactcagcc
tttctctttttttcatttttaactttgacacagtaaggctagcccttctc
tcttggtctcccaagcagctgggattacaggccacagcctggctcccatg
aagttttgtgggctattactggcctgggtcactatgggttgctagggatg
tggattcgagttattccgctccaagaggggctgtcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_34438059_34438708
seq2: B6Ng01-169O23.b_48_697

seq1  GAATTCCAGAGGGAATCTGAGAGGGATATGAAAGGGAAATAGGAAGTGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAGGGAATCTGAGAGGGATATGAAAGGGAAATAGGAAGTGAG  50

seq1  AATGATAAAAAAAAATACATCATATACGGTATGAATTATCTAACAATAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATAAAAAAAAATACATCATATACGGTATGAATTATCTAACAATAAA  100

seq1  TAAATAAGAGGCATCTCCTGAGTAGGTAAGTGTGAAGGGTTGACTGTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAGAGGCATCTCCTGAGTAGGTAAGTGTGAAGGGTTGACTGTGAG  150

seq1  GCCTCCCAGATGGTAGAGCTATTGCAGAAGTTGTGCAAATCAGAGAGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCCAGATGGTAGAGCTATTGCAGAAGTTGTGCAAATCAGAGAGCAG  200

seq1  AGCTTTACTAGGGAGCAATGTGCACTCTTTCTTTCCCTCCCTCCCACCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTACTAGGGAGCAATGTGCACTCTTTCTTTCCCTCCCTCCCACCTT  250

seq1  CTCTCTTCCTTCCTCCCTCCCTCCCTTTCTCTATTCTCCCTTTCTTCCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTCCTTCCTCCCTCCCTCCCTTTCTCTATTCTCCCTTTCTTCCTC  300

seq1  CCTCTCCTCCTCTCTCCTTCCTTTCCTCCCTCCCTCCACCTCCACCTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCCTCCTCTCTCCTTCCTTTCCTCCCTCCCTCCACCTCCACCTCAG  350

seq1  GATCAACTATAGAACTGATGATGGGAAGTGGACTCTTCATCCACTGCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAACTATAGAACTGATGATGGGAAGTGGACTCTTCATCCACTGCTGG  400

seq1  TAAGAATGTCAAGTGGCATCGCTTCTTGGTCTTTTGGCTAAGATCAAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAATGTCAAGTGGCATCGCTTCTTGGTCTTTTGGCTAAGATCAAGTG  450

seq1  AAGAATGTCTACCCCTTAAGAACTGAAGCACAATCACATGGCTCAGGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATGTCTACCCCTTAAGAACTGAAGCACAATCACATGGCTCAGGCCT  500

seq1  TTAATCCCAGCACTAAGGAAGCAGAGGCAAGAGATCCGCCCTTAGATCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCCCAGCACTAAGGAAGCAGAGGCAAGAGATCCGCCCTTAGATCAG  550

seq1  CTAAGACATGGTGATTACTGTCTCTCAAAAGAAGAAGAAGAAGGAGAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGACATGGTGATTACTGTCTCTCAAAAGAAGAAGAAGAAGGAGAAGG  600

seq1  AGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGAAGAGGAGGAGGAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGAAGAGGAGGAGGAGG  650

seq1: chr5_34646163_34647214
seq2: B6Ng01-169O23.g_68_1103 (reverse)

seq1  GGACAGCCCCTCTTGGGGAAGCAGAATTAACATCAGAATACAAACATCAC  50
      ||||||||||||||||   ||| ||| |||| || |||| |  ||||  |
seq2  GGACAGCCCCTCTTGG---AGCGGAA-TAAC-TC-GAATCC--ACAT--C  40

seq1  CAGAGCAACCCACAATAGTGACCCCAGGCCAGTAATAGCCCACAAAACCT  100
      |  ||||||||   ||||||| ||||||||||||||||||||||||| ||
seq2  CCTAGCAACCC---ATAGTGA-CCCAGGCCAGTAATAGCCCACAAAA-CT  85

seq1  TCATGGGAGCCAGGCCTTGTGGCCTGTAATCCCAGCTGCTTGGGAGGCCA  150
      |||||||||||||||  ||||||||||||||||||||||||||||| |||
seq2  TCATGGGAGCCAGGC--TGTGGCCTGTAATCCCAGCTGCTTGGGAGACCA  133

seq1  AGAGAGAAGGGCTAGCC-TACTGTGTCAAAGTTAAAAATGAAAAAAAGAG  199
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AGAGAGAAGGGCTAGCCTTACTGTGTCAAAGTTAAAAATGAAAAAAAGAG  183

seq1  AAAGGCTGAGTTACAGGTCATTGTGAACCACTTGACCGGGGTTCTGGGAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCTGAGTTACAGGTCATTGTGAACCACTTGACCGGGGTTCTGGGAA  233

seq1  CCGAACTCTGGTCTTTTATAAAAGCAGTACAAGCTCTAGGAGAACCATCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAACTCTGGTCTTTTATAAAAGCAGTACAAGCTCTAGGAGAACCATCT  283

seq1  CCTAGCCCTCCTCCCAAATCAGAGGGCTTCTTTAGACCCACAGGGAGCCC  349
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CCTAGCCCTCCTCCCAAATCAGAGAGCTTCTTTAGACCCACAGGGAGCCC  333

seq1  TATTCCCTACTCTTGCAGGGTCTCTAATAGCACTGTCCCACCACATCCCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCCTACTCTTGCAGGGTCTCTAATAGCACTGTCCCACCACATCCCA  383

seq1  TGGAGAAAGGTGACCCTGACCCTGCTAAGATGCTGATGTGAACGTGTGAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAAAGGTGACCCTGACCCTGCTAAGATGCTGATGTGAACGTGTGAG  433

seq1  AAGGAATGAGAGAATAGGAAGGGAAGAGGAAAAAAAAAAAAAAAGGATAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAATGAGAGAATAGGAAGGGAAGAGGAAAAAAAAAAAAAAAGGATAT  483

seq1  GCCCAAATTGGATTGAGCCAGCCTGAAAGAGGTGGGAACCCCAGATGGCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAAATTGGATTGAGCCAGCCTGAAAGAGGTGGGAACCCCAGATGGCA  533

seq1  GCTGTAGAGGCCAGTTTCACCTTCAGGGGCCAAGGTTGACAGCTGAGAGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTAGAGGCCAGTTTCACCTTCAGGGGCCAAGGTTGACAGCTGAGAGA  583

seq1  TTTAAAAAGGTGAAAGGACACTGGCCATGGGCAAGGGACAAGAAGGTAAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAAGGTGAAAGGACACTGGCCATGGGCAAGGGACAAGAAGGTAAG  633

seq1  AGAGGCCACAGGAATAAGTGAGGACAGTGGGCAGGCTGCCACGTGGGGAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCCACAGGAATAAGTGAGGACAGTGGGCAGGCTGCCACGTGGGGAG  683

seq1  CTGTAGAAAGCTCTAGAAGGAGGCCTTAGTAGCCTCTGTGAAGAATGGTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGAAAGCTCTAGAAGGAGGCCTTAGTAGCCTCTGTGAAGAATGGTG  733

seq1  TTCTAGGCCACAAGGAAGCTAGAGGCTGGTAAGGACAGTGCTTGCCCTGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGGCCACAAGGAAGCTAGAGGCTGGTAAGGACAGTGCTTGCCCTGG  783

seq1  AAGGCATGGGACGGTCATAGCCTCGCTCAGCACTGCCCTCTCGGTGGTCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCATGGGACGGTCATAGCCTCGCTCAGCACTGCCCTCTCGGTGGTCA  833

seq1  TGCACTTCCAAAGTCATCCCCCAAATACATCTCCTGCTTCCAAGCATGAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTTCCAAAGTCATCCCCCAAATACATCTCCTGCTTCCAAGCATGAG  883

seq1  CGGCAAGTTGTGTATCACTACAGAGCTGTCCTGGCCTCAGACATGTGGTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCAAGTTGTGTATCACTACAGAGCTGTCCTGGCCTCAGACATGTGGTC  933

seq1  CTTGGTCTTGCAAACAAGATAATGGCATAAATGCAACCCTAGCTTTCGGC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTCTTGCAAACAAGATAATGGCATAAATGCAACCCTAGCTTTCGGC  983

seq1  TGTCCCTTCTGATTGCTTTTGGAAGGTCTGTATCAAAGAACCTTCAGGAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCTTCTGATTGCTTTTGGAAGGTCTGTATCAAAGAACCTTCAGGAA  1033

seq1  TTC  1052
      |||
seq2  TTC  1036