BAC Information

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BAC

Clone NameB6Ng01-170D13
Chromosome5 (Build37)
Map Location 74,121,409 - 74,241,296
singlet/doubletdoublet
Overlap genenone
Upstream geneTxk, Tec, Slain2, Slc10a4, LOC667127, Fryl, Ociad1, Ociad2, LOC667154, LOC100042205, C130090K23Rik, LOC627733, Dcun1d4, BC031901, Sgcb, Spata18
Downstream geneUsp46, 2700023E23Rik, Rasl11b, Scfd2, Fip1l1, Lnx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-170D13.bB6Ng01-170D13.g
ACCDH960990DH960991
length8581,090
definitionDH960990|Mus musculus domesticus DNA, BAC clone: B6Ng01-170D13, 5' end.DH960991|Mus musculus domesticus DNA, BAC clone: B6Ng01-170D13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,121,409 - 74,122,268)(74,240,207 - 74,241,296)
sequence
gaattctactgttgtaaattaatacttctttctgatccaatatctagcac
cacttatcataaaatattgaaattctaaacaaaaatatgcttcgttgtta
tcatataaaagcacaattatgtttcaaaaggacaaattgatactttctct
ttcactacctgaggttcacagacttgccctggaagcagaagaccctgtct
taagaaggtgggaagtctccctatttcttcagtttccctcctacactaac
atggaaagggcccctatctggcctcatgttgcagatttgtctgcatggct
gcgtttctcattctctcagggaaactccaagacctcctttcttgtctttt
ttagctgagtaattattgggcattaaagactgcaaaccccgcggcctgtg
aggcctttgctcagcacgacagctgcgttgttttaaccgcagctccatct
tacaggtgaagaatcggagtgtgggagaccagggctttgcaccacagggg
aagagtttataaaacaacagcccacactgggaataagtaactttttttgt
ttttttgcatgtggaatatgacattgttaatacaagttgccagctaagag
tccttgagaaattaattagaaatggctctaactttttattgttcctgccc
ccccaaaaaaagtcatgtaaaatggcttgctgataaataatctgggtaga
atttctttttttaaaaaaatctggatagaatttaacatgacctgaaaact
ctatgtcctggggagagcttcaaactcctcttagaatagtgaatcaatca
actaaaaattctccttctctctctctccctctctctctctctctctctct
ctctctct
gaattcattttgtagaccaggctgaacttgaactcagaaatctgcctgcc
tctgccccccaagtgctgggattaaaggcgtgcgccaccacaaacttttc
taaagaagcgaccagaaagagatgaaagcttaatgcacctagactatagc
cccagggagagatttagtcctgagttcttttaacctggtggcgcatcggc
atcccccagagggttttgaccatcctaagtgcttcttgagggctaggacc
ttaaaagttctgagtcagtaggtctggggggacattttcaacaccccccc
caggaactgctggtcaggtgaatcccgggaagcctttgccagcccattcc
tttggagatgtggctacagattgggattacctggggaactgaacaattaa
tgatgcctggcttccaccctagccactctagtttagtttgtatggagtac
gagtcgagcagtgggcattttttaaggctcccttgatggttgtaacgcgt
agcagagttggggggctgctaacgacatcggggaagggagactcaggaat
caagaaaaattgagtttcagagattgagaatgtacgctgtggtaaagcgc
cctgtgaaaatcctcagagcccagatgaagtcctgtcttacccagaggaa
gtcatgcaggggaaccgcagagatgctcagtgctgtgtccgtaccacaaa
ggaccacaggtcagtgtcacaaagcatgcacaaagcccttagctccccag
tgctgcagaaaaacagtaacgaaaatcccacatgggagtaattcccctgc
aaattatagcttgctacccaagtcacacaatagccagccacccaagaaca
cctggctggtggcctacaatggctccctgacacactgagactaaagccac
tcctgtggtaagcccctgtgactgatgttctttgtttcagacaaatgacc
catgctcccgtcttgattctgcgtgtccctttgcacagtttcttcagcag
tacatagtattataaacctttatgcatccacacggccacttctctgtcac
tcctggccagtgctttcattggagaagtttctcttgtgtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_74121409_74122268
seq2: B6Ng01-170D13.b_47_904

seq1  GAATTCTACTGTTGTAAATTAATACTTCTTTCTGATCCAATATCTAGCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACTGTTGTAAATTAATACTTCTTTCTGATCCAATATCTAGCAC  50

seq1  CACTTATCATAAAATATTGAAATTCTAAACAAAAATATGCTTCGTTGTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTATCATAAAATATTGAAATTCTAAACAAAAATATGCTTCGTTGTTA  100

seq1  TCATATAAAAGCACAATTATGTTTCAAAAGGACAAATTGATACTTTCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATAAAAGCACAATTATGTTTCAAAAGGACAAATTGATACTTTCTCT  150

seq1  TTCACTACCTGAGGTTCACAGACTTGCCCTGGAAGCAGAAGACCCTGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTACCTGAGGTTCACAGACTTGCCCTGGAAGCAGAAGACCCTGTCT  200

seq1  TAAGAAGGTGGGAAGTCTCCCTATTTCTTCAGTTTCCCTCCTACACTAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAGGTGGGAAGTCTCCCTATTTCTTCAGTTTCCCTCCTACACTAAC  250

seq1  ATGGAAAGGGCCCCTATCTGGCCTCATGTTGCAGATTTGTCTGCATGGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAAGGGCCCCTATCTGGCCTCATGTTGCAGATTTGTCTGCATGGCT  300

seq1  GCGTTTCTCATTCTCTCAGGGAAACTCCAAGACCTCCTTTCTTGTCTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTTTCTCATTCTCTCAGGGAAACTCCAAGACCTCCTTTCTTGTCTTTT  350

seq1  TTAGCTGAGTAATTATTGGGCATTAAAGACTGCAAACCCCGCGGCCTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTGAGTAATTATTGGGCATTAAAGACTGCAAACCCCGCGGCCTGTG  400

seq1  AGGCCTTTGCTCAGCACGACAGCTGCGTTGTTTTAACCGCAGCTCCATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTTTGCTCAGCACGACAGCTGCGTTGTTTTAACCGCAGCTCCATCT  450

seq1  TACAGGTGAAGAATCGGAGTGTGGGAGACCAGGGCTTTGCACCACAGGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGTGAAGAATCGGAGTGTGGGAGACCAGGGCTTTGCACCACAGGGG  500

seq1  AAGAGTTTATAAAACAACAGCCCACACTGGGAATAAGTAACTTTTTTTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTTTATAAAACAACAGCCCACACTGGGAATAAGTAACTTTTTTTGT  550

seq1  TTTTTTGCATGTGGAATATGACATTGTTAATACAAGTTGCCAGCTAAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGCATGTGGAATATGACATTGTTAATACAAGTTGCCAGCTAAGAG  600

seq1  TCCTTGAGAAATTAATTAGAAATGGCTCTAACTTTTTATTGTTCCTGCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGAGAAATTAATTAGAAATGGCTCTAACTTTTTATTGTTCCTGCCC  650

seq1  CCCCAAAAAAAGTCATGTAAAATGGCTTGCTGATAAATAATCTGGGTAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAAAAAAGTCATGTAAAATGGCTTGCTGATAAATAATCTGGGTAGA  700

seq1  ATTTCTTTTTTTAAAAAAATCTGGATAGAATTTAACATGACCTGAAAACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTTTTTTAAAAAAATCTGGATAGAATTTAACATGACCTGAAAACT  750

seq1  CTATGTCCTGGGGAGAGCTTCAAACTCCTCTTAGAATAGTGAATCAATCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTCCTGGGGAGAGCTTCAAACTCCTCTTAGAATAGTGAATCAATCA  800

seq1  ACTAAAAATTCTCCTTCTCTCTCTCTCCCTCTCTCTCTCTCTCTCTCTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAAATTCTCCTTCTCTCTCTCTCCCTCTCTCTCTCTCTCTCTCTCT  850

seq1  CTCCCTCTCT  860
      ||| ||||  
seq2  CTCTCTCT--  858

seq1: chr5_74240207_74241296
seq2: B6Ng01-170D13.g_67_1156 (reverse)

seq1  GACACAAGAGAAAC-TCTCCAATGAAAGCACTGGGCAGGGAGTGGCAGAG  49
      |||||||||||||| ||||||||||||||||||| || |||||| |||||
seq2  GACACAAGAGAAACTTCTCCAATGAAAGCACTGGCCA-GGAGTGACAGAG  49

seq1  -AGTGGCCGTGTGGGATGCAT-AAGGTTTATATGACTATGTACTGCTGAA  97
       ||||||||||| |||||||| ||||||||||  ||||||||||||||||
seq2  AAGTGGCCGTGT-GGATGCATAAAGGTTTATAATACTATGTACTGCTGAA  98

seq1  GAAACTGTGCAAAGGGACACGCAGAATCAAGACGGGAGCATGGGTCATTT  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTGTGCAAAGGGACACGCAGAATCAAGACGGGAGCATGGGTCATTT  148

seq1  GTCCTGAAACAAAGAACATCAGTCACAGGGGCTTACCACAGGAGTGGCTT  197
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GT-CTGAAACAAAGAACATCAGTCACAGGGGCTTACCACAGGAGTGGCTT  197

seq1  TAGTCTCAGTGTGTCAGGGAGCCATTGTAGGCCACCAGCCAGGTGTTCTT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTCAGTGTGTCAGGGAGCCATTGTAGGCCACCAGCCAGGTGTTCTT  247

seq1  GGGTGGCTGGCTATTGTGTGACTTGGGTAGCAAGCTATAATTTGCAGGGG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGCTGGCTATTGTGTGACTTGGGTAGCAAGCTATAATTTGCAGGGG  297

seq1  AATTACTCCCATGTGGGATTTTCGTTACTGTTTTTCTGCAGCACTGGGGA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACTCCCATGTGGGATTTTCGTTACTGTTTTTCTGCAGCACTGGGGA  347

seq1  GCTAAGGGCTTTGTGCATGCTTTGTGACACTGACCTGTGGTCCTTTGTGG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGGGCTTTGTGCATGCTTTGTGACACTGACCTGTGGTCCTTTGTGG  397

seq1  TACGGACACAGCACTGAGCATCTCTGCGGTTCCCCTGCATGACTTCCTCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGGACACAGCACTGAGCATCTCTGCGGTTCCCCTGCATGACTTCCTCT  447

seq1  GGGTAAGACAGGACTTCATCTGGGCTCTGAGGATTTTCACAGGGCGCTTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAAGACAGGACTTCATCTGGGCTCTGAGGATTTTCACAGGGCGCTTT  497

seq1  ACCACAGCGTACATTCTCAATCTCTGAAACTCAATTTTTCTTGATTCCTG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAGCGTACATTCTCAATCTCTGAAACTCAATTTTTCTTGATTCCTG  547

seq1  AGTCTCCCTTCCCCGATGTCGTTAGCAGCCCCCCAACTCTGCTACGCGTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCCCTTCCCCGATGTCGTTAGCAGCCCCCCAACTCTGCTACGCGTT  597

seq1  ACAACCATCAAGGGAGCCTTAAAAAATGCCCACTGCTCGACTCGTACTCC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCATCAAGGGAGCCTTAAAAAATGCCCACTGCTCGACTCGTACTCC  647

seq1  ATACAAACTAAACTAGAGTGGCTAGGGTGGAAGCCAGGCATCATTAATTG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAACTAAACTAGAGTGGCTAGGGTGGAAGCCAGGCATCATTAATTG  697

seq1  TTCAGTTCCCCAGGTAATCCCAATCTGTAGCCACATCTCCAAAGGAATGG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTTCCCCAGGTAATCCCAATCTGTAGCCACATCTCCAAAGGAATGG  747

seq1  GCTGGCAAAGGCTTCCCGGGATTCACCTGACCAGCAGTTCCTGGGGGGGG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCAAAGGCTTCCCGGGATTCACCTGACCAGCAGTTCCTGGGGGGGG  797

seq1  TGTTGAAAATGTCCCCCCAGACCTACTGACTCAGAACTTTTAAGGTCCTA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAAAATGTCCCCCCAGACCTACTGACTCAGAACTTTTAAGGTCCTA  847

seq1  GCCCTCAAGAAGCACTTAGGATGGTCAAAACCCTCTGGGGGATGCCGATG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCAAGAAGCACTTAGGATGGTCAAAACCCTCTGGGGGATGCCGATG  897

seq1  CGCCACCAGGTTAAAAGAACTCAGGACTAAATCTCTCCCTGGGGCTATAG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCACCAGGTTAAAAGAACTCAGGACTAAATCTCTCCCTGGGGCTATAG  947

seq1  TCTAGGTGCATTAAGCTTTCATCTCTTTCTGGTCGCTTCTTTAGAAAAGT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGTGCATTAAGCTTTCATCTCTTTCTGGTCGCTTCTTTAGAAAAGT  997

seq1  TTGTGGTGGCGCACGCCTTTAATCCCAGCACTTGGGGGGCAGAGGCAGGC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGTGGCGCACGCCTTTAATCCCAGCACTTGGGGGGCAGAGGCAGGC  1047

seq1  AGATTTCTGAGTTCAAGTTCAGCCTGGTCTACAGAATGAATTC  1090
      ||||||||||||||||||||||||||||||||| |||||||||
seq2  AGATTTCTGAGTTCAAGTTCAGCCTGGTCTACAAAATGAATTC  1090