BAC Information

Click to search

BAC

Clone NameB6Ng01-170L23
Chromosome5 (Build37)
Map Location 148,357,001 - 148,486,380
singlet/doubletdoublet
Overlap genePan3, Flt1
Upstream geneLOC100041578, EG667172, Gpr12, Usp12, 1700041I07Rik, Rpl21, Rasl11a, LOC100039699, LOC627218, Gtf3a, Mtif3, Lnx2, Rpo1-3, Gsh1, Pdx1, Cdx2, EG231903, LOC622952, Flt3, Map1lc3-ps3, LOC384254, LOC100039805
Downstream geneLOC100039825, Pomp, Slc46a3, C130038G02Rik, LOC100041819, Slc7a1, LOC100041842, Ubl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-170L23.bB6Ng01-170L23.g
ACCDH961381DH961382
length1,152695
definitionDH961381|Mus musculus domesticus DNA, BAC clone: B6Ng01-170L23, 5' end.DH961382|Mus musculus domesticus DNA, BAC clone: B6Ng01-170L23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(148,357,001 - 148,358,159)(148,485,821 - 148,486,380)
sequence
gaattcttatgaattttgacccatggtgtaagctgtttatggaaatctga
aagggactgtgatagaaataactttaatttattatagtatttcattcatc
atcgtcaaaaatgttgtcctaaaatagattaatcttcctcacagtacgta
ctgcatattttttatactttacctctttcagctagatgctggtgtgccag
aaaaaatcagcctgatttccagagacgagaagagcgtgctggtggtgaca
tacagtgacctaaaacgctgctttgaaaatacctttcaagaactgattgc
ggctgcaaatggtcagttgtagtatttgctaaaaatgttgagagggcatg
gtgaaggaccaagcctctagccagtttgcactacggctgaactgtcctcc
atctcctgccaccagggggaggagcaggaaggagcgaagcttctcacacg
tgggtctaacaggtgcactgttacttgagaggaagactgtctcactttgt
gcgcactctggctgcctcaggcctccgaggaatttgtgcagactcaggtc
accttcggtgaatgacgcgcctgcttacggttttccacttgtgtatgcac
taattgtcattttttaaagacttttttcctgatctttgacctcttgccac
attgtatacttactaagggaactatttgcaaggacattgggaaacaaagg
gggcagctgttcgccactgagagatgcagaatttgctcttgggggatggg
ccaggtcagtacattagttcatagaaatgccgtgtagtgcatagtcctta
tgagtattgtgtgcaagctccacatgccacccactgtttagctcaagttg
aggcttgtattgtgtttaagaacacgcagagagaaatatcattgagctgt
cagatatgaatttccgtttgttgatttaaatccttttccaggtaacgatc
ggaacagtaactgaaggagcaggcgctgctcttctccaggttcatctaga
tgcttctcaaagaggcgttttgtctgccagtcacataccacttatcttga
cgtaattttatagcaatgaaaattgtgctgacgcctaaaagtggaggagt
tatttaccctagggtcttcccagtattggttttgttttttttttgttgtt
tg
gaattcatttcccagcacccacatggagcttgcaacaaactgtaactagg
cttcaaggcacccaatgccctcttcagcatatatgtatatgtatacatat
atatacagatacagataaatatgtatatttatgtatatataaaatagcta
ggcagtggtggggcatgcctttaatcccagcacttgagaggcacaggcag
gtggatttctgactttgaggtcagcctggcctacagagtgagttctaaga
cagccaaggctacacagagaaactttgcattgaaaaactccaataaataa
agacaagtaaacaaacaaataaataaaatagaaataaacattataaaaat
aataaaatataaaatgaattcatagactatctgagttcaaagggctccta
agaacttctagaagcctgcagatagggcagagccaagccacctgactcgt
ctaaacagagaacatcaaggcattgattttactttcaaaacattttaaaa
ctcctgttgcttggtgcctttgattgtttctctatggacaattggtgtga
ccattttgtgtaattaataagaactccacatgagcccacaataggagcct
ctatttttatttttatcagatttagtggatccgacttacaagcgttctca
tacttgaacttcttttttgttttactttgttttgtttttgttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_148357001_148358159
seq2: B6Ng01-170L23.b_46_1197

seq1  GAATTCTTATGAATTTTGACCCATGGTGTAAGCTGTTTATGGAAATCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATGAATTTTGACCCATGGTGTAAGCTGTTTATGGAAATCTGA  50

seq1  AAGGGACTGTGATAGAAATAACTTTAATTTATTATAGTATTTCATTCATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGACTGTGATAGAAATAACTTTAATTTATTATAGTATTTCATTCATC  100

seq1  ATCGTCAAAAATGTTGTCCTAAAATAGATTAATCTTCCTCACAGTACGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGTCAAAAATGTTGTCCTAAAATAGATTAATCTTCCTCACAGTACGTA  150

seq1  CTGCATATTTTTTATACTTTACCTCTTTCAGCTAGATGCTGGTGTGCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATATTTTTTATACTTTACCTCTTTCAGCTAGATGCTGGTGTGCCAG  200

seq1  AAAAAATCAGCCTGATTTCCAGAGACGAGAAGAGCGTGCTGGTGGTGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATCAGCCTGATTTCCAGAGACGAGAAGAGCGTGCTGGTGGTGACA  250

seq1  TACAGTGACCTAAAACGCTGCTTTGAAAATACCTTTCAAGAACTGATTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTGACCTAAAACGCTGCTTTGAAAATACCTTTCAAGAACTGATTGC  300

seq1  GGCTGCAAATGGTCAGTTGTAGTATTTGCTAAAAATGTTGAGAGGGCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCAAATGGTCAGTTGTAGTATTTGCTAAAAATGTTGAGAGGGCATG  350

seq1  GTGAAGGACCAAGCCTCTAGCCAGTTTGCACTACGGCTGAACTGTCCTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGGACCAAGCCTCTAGCCAGTTTGCACTACGGCTGAACTGTCCTCC  400

seq1  ATCTCCTGCCACCAGGGGGAGGAGCAGGAAGGAGCGAAGCTTCTCACACG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCTGCCACCAGGGGGAGGAGCAGGAAGGAGCGAAGCTTCTCACACG  450

seq1  TGGGTCTAACAGGTGCACTGTTACTTGAGAGGAAGACTGTCTCACTTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCTAACAGGTGCACTGTTACTTGAGAGGAAGACTGTCTCACTTTGT  500

seq1  GCGCACTCTGGCTGCCTCAGGCCTCCGAGGAATTTGTGCAGACTCAGGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCACTCTGGCTGCCTCAGGCCTCCGAGGAATTTGTGCAGACTCAGGTC  550

seq1  ACCTTCGGTGAATGACGCGCCTGCTTACGGTTTTCCACTTGTGTATGCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCGGTGAATGACGCGCCTGCTTACGGTTTTCCACTTGTGTATGCAC  600

seq1  TAATTGTCATTTTTTAAAGACTTTTTTCCTGATCTTTGACCTCTTGCCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGTCATTTTTTAAAGACTTTTTTCCTGATCTTTGACCTCTTGCCAC  650

seq1  ATTGTATACTTACTAAGGGAACTATTTGCAAGGACATTGGGAAACAAAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTATACTTACTAAGGGAACTATTTGCAAGGACATTGGGAAACAAAGG  700

seq1  GGGCAGCTGTTCGCCACTGAGAGATGCAGAATTTGCTCTTGGGGGATGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGCTGTTCGCCACTGAGAGATGCAGAATTTGCTCTTGGGGGATGGG  750

seq1  CCAGGTCAGTACATTAGTTCATAGAAATGCCGTGTAGTGCATAGTCCTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTCAGTACATTAGTTCATAGAAATGCCGTGTAGTGCATAGTCCTTA  800

seq1  TGAGTATTGTGTGCAAGCTCCACATGCCACCCACTG-TTAGCTCAAGTTG  849
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TGAGTATTGTGTGCAAGCTCCACATGCCACCCACTGTTTAGCTCAAGTTG  850

seq1  AGGCTTGTATTGTGTTTAAGAACACGCAGAGAGAAATATCATTGAGCTGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTGTATTGTGTTTAAGAACACGCAGAGAGAAATATCATTGAGCTGT  900

seq1  CAGATATGAATTTCCGTTTGTTGATTTAAATCCTTTTCCAGGTAACGATC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATATGAATTTCCGTTTGTTGATTTAAATCCTTTTCCAGGTAACGATC  950

seq1  GGAACAGTAACTGAAGGAGCAGGCGCTGCTCTTCTCCAGGTTCATCTAGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAGTAACTGAAGGAGCAGGCGCTGCTCTTCTCCAGGTTCATCTAGA  1000

seq1  GGCTTCTTCAAAGAGGCG-TCTGTCTGCCAGTCACATA-CACTTATCTTG  1047
       ||||| ||||||||||| | ||||||||||||||||| |||||||||||
seq2  TGCTTC-TCAAAGAGGCGTTTTGTCTGCCAGTCACATACCACTTATCTTG  1049

seq1  ACGTAATTTTTAATAGCAAAATG-AAATTGTGCTGAAGGCCTAAAAGTGG  1096
      ||||||||||  |||||  |||| ||||||||||| | ||||||||||||
seq2  ACGTAATTTT--ATAGC--AATGAAAATTGTGCTG-ACGCCTAAAAGTGG  1094

seq1  AGGAGTTATATTACCTTAGGGTCTTTCCAGTTTATTTGTTTTTTGTTTTT  1146
      ||||||||| ||||| ||||||||| ||||  |||| |  ||||||||||
seq2  AGGAGTTAT-TTACCCTAGGGTCTTCCCAG--TATTGG--TTTTGTTTTT  1139

seq1  TTTTTTGTTTTTG  1159
      |||||  | ||||
seq2  TTTTTGTTGTTTG  1152

seq1: chr5_148485821_148486380
seq2: B6Ng01-170L23.g_200_761 (reverse)

seq1  AAAAACAAAAACAAAACAAAGTAAAAC-AAAAAGAAGTTCAAGTATGAGA  49
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AAAAACAAAAACAAAACAAAGTAAAACAAAAAAGAAGTTCAAGTATGAGA  50

seq1  ACGCTTGTAAGTCGGATCCACTAAATCTGATAAAAATAAAAATAGAGGCT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCTTGTAAGTCGGATCCACTAAATCTGATAAAAATAAAAATAGAGGCT  100

seq1  CCTATTGTGGGCTCATGTGGAGTTCTTATTAATTACAC-AAATGGTCACA  148
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CCTATTGTGGGCTCATGTGGAGTTCTTATTAATTACACAAAATGGTCACA  150

seq1  CCAATTGTCCATAGAGAAACAATCAAAGGCACCAAGCAACAGGAGTTTTA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTGTCCATAGAGAAACAATCAAAGGCACCAAGCAACAGGAGTTTTA  200

seq1  AAATGTTTTGAAAGTAAAATCAATGCCTTGATGTTCTCTGTTTAGACGAG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTTTGAAAGTAAAATCAATGCCTTGATGTTCTCTGTTTAGACGAG  250

seq1  TCAGGTGGCTTGGCTCTGCCCTATCTGCAGGCTTCTAGAAGTTCTTAGGA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTGGCTTGGCTCTGCCCTATCTGCAGGCTTCTAGAAGTTCTTAGGA  300

seq1  GCCCTTTGAACTCAGATAGTCTATGAATTCATTTTATATTTTATTATTTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTTGAACTCAGATAGTCTATGAATTCATTTTATATTTTATTATTTT  350

seq1  TATAATGTTTATTTCTATTTTATTTATTTGTTTGTTTACTTGTCTTTATT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATGTTTATTTCTATTTTATTTATTTGTTTGTTTACTTGTCTTTATT  400

seq1  TATTGGAGTTTTTCAATGCAAAGTTTCTCTGTGTAGCCTTGGCTGTCTTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGAGTTTTTCAATGCAAAGTTTCTCTGTGTAGCCTTGGCTGTCTTA  450

seq1  GAACTCACTCTGTAGGCCAGGCTGACCTCAAAGTCAGAAATCCACCTGCC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCACTCTGTAGGCCAGGCTGACCTCAAAGTCAGAAATCCACCTGCC  500

seq1  TGTGCCTCTCAAGTGCTGGGATTAAAGGCATGCCCCACCACTGCCTAGCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCTCTCAAGTGCTGGGATTAAAGGCATGCCCCACCACTGCCTAGCT  550

seq1  ATTTTATATATA  560
      ||||||||||||
seq2  ATTTTATATATA  562