BAC Information

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BAC

Clone NameB6Ng01-170O01
Chromosome5 (Build37)
Map Location 59,007,518 - 59,128,428
singlet/doubletdoublet
Overlap genenone
Upstream genePcdh7, LOC100041385
Downstream geneLOC100041396, LOC666499, EG625870, LOC100041425
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-170O01.bB6Ng01-170O01.g
ACCDH961481DH961482
length1,2021,052
definitionDH961481|Mus musculus domesticus DNA, BAC clone: B6Ng01-170O01, 5' end.DH961482|Mus musculus domesticus DNA, BAC clone: B6Ng01-170O01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,127,237 - 59,128,428)(59,007,518 - 59,008,575)
sequence
gaattctcaaaggaaaacataaagcgttcctggcctggatgcattaaaat
gttatccttgccatagcttatgcaaaggccatgccgagaaattgctcagc
acttgagaacaaaggctctgaatcagacgtctaatgtactatcatttctc
agatccatttgcaaccatttgtgcttctcttccttgatcagtgtgtagga
taagaatggagggtgactgatgcctgtaagctacacaacttggcttccag
aaccggttagcttcctccatcgcgaataaaaaagacttgggcagtaaatt
aatgatgagaagtgttctttagtcggccatttccgtacttcatttgtgct
ttggtcagtagttgtagtttttgattgcaccacaagggggcgactgaagg
aaggctgttacctcatctctctggtggcacatattgaatcccagtagaac
tatctacacagtcttcatctctcagaaacccttaacgatctttgtatatt
tcattaactcgaccaatgcgttttccaatgtcctcagatgaaccataaac
aatctcaaatctgtttgctttgagacactggtgaatacatacacagcata
tacttatatatggtgatttgtttctaagctgtggtttgctctagtgatag
tatacttgaaattttaattattcaacaacaaacattccacgattctattt
cacctttataacattaagcaacgctgtaatcattctctatataaataaaa
aaactcaatcattgcagatatttttcttcatacacacacacacacacaca
cacacagagagagagagagagagagagagagagagagaggcacatttttc
ttaaaggatgagaatcgtgtcgtcaacacgccaagtttagttcatggtat
ctctatttgcttctcttcaattataattatggaactgttactaccttgat
atagcctacactaatttctagaattttcccagtagtggtcaagtagggcc
atgaactactttctttatgtccaatgatattccttaatctatcttaagtc
attctcaagagaggaaaaacttctagaaaatcaaagatgagcctctggca
aattgataaggcattactggcccgctctctgtatggcaatctcgagtagg
ccattatcattttactaaaaatgggtgataaggaaacacaagagactact
gt
gaattctttgatttaagaactaacagatatttggggaaaattacaattga
tcattaagcttttgaggcatgctagcttaagcctatatttaatatacatt
tgattagtcacttatttagctgttgcatgatgccagatttaagggagtga
tgaattcacactgaaaaaaaaatgtatttcacaaggccattgttaaatat
attcacggtcatttttctaaatcactttctcttatgatcattgctctcag
ggcataacaattaataaataatacatgaggctatattgcttttaatataa
acaatgaggacatgtaagataaaaatgctaagttaggaaagaaaaataat
ttaattgtgggaacaaaacttaccatatttgttactaaagttccccagtc
atagtttgaaattgaaagtacttttcccctttcctaaacgttctcaattt
taggatgacgagattaaagtttctgaaaaccaatgtgtggtaaactgtaa
gattaatttataaaggaaggtttagccattataatgcaaattcattgaac
acactgggcaaatggaacattgaaggaattctagtactgtttttgatata
tgctattgatcaactaattctccaaaattacgccttaaaccttttgagtt
aacaattttatacatttcagcttaattgtttgtttatattttgtgtctgt
ggaatctgaattacattagaaaatatttgttttataattttttaaaaaac
atccctattggcaacttctgaaacaaacttttctctcccaaaggtaatgg
tttgcaactttattattaaattattaactatattctgagacttcacagtt
ttatttccaatcctggaagcaatttgccaaaaaattttaagtttcaattt
tagcacatgtatagactactttcctaaataacaaagtatctagatttaaa
atagacaattgaatttcatcttttccatatcctttccactctgggaagaa
tgctataaagatctatgtttataattacatgagtggtgatcacttcattt
tt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_59127237_59128428
seq2: B6Ng01-170O01.b_46_1247 (reverse)

seq1  ACAGTAGTTCTTTGTGTTTACCTCTTATCACACA-TTTTAGT-AAATGAT  48
      ||||||||   ||||||||    |||||||| || ||||||| |||||||
seq2  ACAGTAGTCTCTTGTGTTT---CCTTATCACCCATTTTTAGTAAAATGAT  47

seq1  AATGG-CTACTC-AGAATGCCATACAGA-AGCAGG-CAGGATAGCC-TAT  93
      ||||| |||||| ||| ||||||||||| ||| || ||| |  ||| |||
seq2  AATGGCCTACTCGAGATTGCCATACAGAGAGCGGGCCAGTAATGCCTTAT  97

seq1  CAA-TTGCAGGAGGCT-AACTATGA-TTTCTAG-AGTTTCTCCTC-CTTG  138
      ||| ||||  |||||| | || ||| ||||||| ||||| ||||| ||||
seq2  CAATTTGCCAGAGGCTCATCTTTGATTTTCTAGAAGTTTTTCCTCTCTTG  147

seq1  AGAATGAC-TAAGATAGATAAAGGAATATCATTGGACATAAAGAAAAGTA  187
      |||||||| |||||||||| ||||||||||||||||||||||| ||||||
seq2  AGAATGACTTAAGATAGATTAAGGAATATCATTGGACATAAAG-AAAGTA  196

seq1  GTTCATGGCCCTACTTGA-CACTACTGGGAAAATTCTAGAAATTAGTGTA  236
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GTTCATGGCCCTACTTGACCACTACTGGGAAAATTCTAGAAATTAGTGTA  246

seq1  GGCTATATCAAGGTAGTAACAGTTCCATAATTATAATTGAAGAGAAGCAA  286
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATATCAAGGTAGTAACAGTTCCATAATTATAATTGAAGAGAAGCAA  296

seq1  ATAGAGATACCATGAACTAAACTTAGCATTTTGACGACACGATTCTCATC  336
      |||||||||||||||||||||||| || | ||||||||||||||||||||
seq2  ATAGAGATACCATGAACTAAACTTGGCGTGTTGACGACACGATTCTCATC  346

seq1  CTTTAAGAAAAATGTGCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAGAAAAATGTGCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  396

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTATGAAGAAAAATATCTGCAATGATT  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTATGAAGAAAAATATCTGCAATGATT  446

seq1  GAGTTTTTTTATTTATATAGAGAATGATTACAGCGTTGCTTAATGTTATA  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTTTTTATTTATATAGAGAATGATTACAGCGTTGCTTAATGTTATA  496

seq1  AAGGTGAAATAGAATCGTGGAATGTTTGTTGTTGAATAATTAAAATTTCA  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGAAATAGAATCGTGGAATGTTTGTTGTTGAATAATTAAAATTTCA  546

seq1  AGTATACTATCACTAGAGCAAACCACAGCTTAGAAACAAATCACCATATA  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATACTATCACTAGAGCAAACCACAGCTTAGAAACAAATCACCATATA  596

seq1  TAAGTATATGCTGTGTATGTATTCACCAGTGTCTCAAAGCAAACAGATTT  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTATATGCTGTGTATGTATTCACCAGTGTCTCAAAGCAAACAGATTT  646

seq1  GAGATTGTTTATGGTTCATCTGAGGACATTGGAAAACGCATTGGTCGAGT  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTGTTTATGGTTCATCTGAGGACATTGGAAAACGCATTGGTCGAGT  696

seq1  TAATGAAATATACAAAGATCGTTAAGGGTTTCTGAGAGATGAAGACTGTG  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAAATATACAAAGATCGTTAAGGGTTTCTGAGAGATGAAGACTGTG  746

seq1  TAGATAGTTCTACTGGGATTCAATATGTGCCACCAGAGAGATGAGGTAAC  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAGTTCTACTGGGATTCAATATGTGCCACCAGAGAGATGAGGTAAC  796

seq1  AGCCTTCCTTCAGTCGCCCCCTTGTGGTGCAATCAAAAACTACAACTACT  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTCCTTCAGTCGCCCCCTTGTGGTGCAATCAAAAACTACAACTACT  846

seq1  GACCAAAGCACAAATGAAGTACGGAAATGGCCGACTAAAGAACACTTCTC  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAAAGCACAAATGAAGTACGGAAATGGCCGACTAAAGAACACTTCTC  896

seq1  ATCATTAATTTACTGCCCAAGTCTTTTTTATTCGCGATGGAGGAAGCTAA  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTAATTTACTGCCCAAGTCTTTTTTATTCGCGATGGAGGAAGCTAA  946

seq1  CCGGTTCTGGAAGCCAAGTTGTGTAGCTTACAGGCATCAGTCACCCTCCA  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGTTCTGGAAGCCAAGTTGTGTAGCTTACAGGCATCAGTCACCCTCCA  996

seq1  TTCTTATCCTACACACTGATCAAGGAAGAGAAGCACAAATGGTTGCAAAT  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTATCCTACACACTGATCAAGGAAGAGAAGCACAAATGGTTGCAAAT  1046

seq1  GGATCTGAGAAATGATAGTACATTAGACGTCTGATTCAGAGCCTTTGTTC  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTGAGAAATGATAGTACATTAGACGTCTGATTCAGAGCCTTTGTTC  1096

seq1  TCAAGTGCTGAGCAATTTCTCGGCATGGCCTTTGCATAAGCTATGGCAAG  1136
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTGCTGAGCAATTTCTCGGCATGGCCTTTGCATAAGCTATGGCAAG  1146

seq1  GATAACATTTTAATGCATCCAGGCCAGGAACGCTTTATGTTTTCCTTTGA  1186
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAACATTTTAATGCATCCAGGCCAGGAACGCTTTATGTTTTCCTTTGA  1196

seq1  GAATTC  1192
      ||||||
seq2  GAATTC  1202

seq1: chr5_59007518_59008575
seq2: B6Ng01-170O01.g_66_1117

seq1  GAATTCTTTGATTTAAGAACTAACAGATATTTGGGGAAAATTACAATTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGATTTAAGAACTAACAGATATTTGGGGAAAATTACAATTGA  50

seq1  TCATTAAGCTTTTGAGGCATGCTAGCTTAAGCCTATATTTAATATACATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTAAGCTTTTGAGGCATGCTAGCTTAAGCCTATATTTAATATACATT  100

seq1  TGATTAGTCACTTATTTAGCTGTTGCATGATGCCAGATTTAAGGGAGTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTAGTCACTTATTTAGCTGTTGCATGATGCCAGATTTAAGGGAGTGA  150

seq1  TGAATTCACACTGAAAAAAAAATGTATTTCACAAGGCCATTGTTAAATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTCACACTGAAAAAAAAATGTATTTCACAAGGCCATTGTTAAATAT  200

seq1  ATTCACGGTCATTTTTCTAAATCACTTTCTCTTATGATCATTGCTCTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACGGTCATTTTTCTAAATCACTTTCTCTTATGATCATTGCTCTCAG  250

seq1  GGCATAACAATTAATAAATAATACATGAGGCTATATTGCTTTTAATATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATAACAATTAATAAATAATACATGAGGCTATATTGCTTTTAATATAA  300

seq1  ACAATGAGGACATGTAAGATAAAAATGCTAAGTTAGGAAAGAAAAATAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGAGGACATGTAAGATAAAAATGCTAAGTTAGGAAAGAAAAATAAT  350

seq1  TTAATTGTGGGAACAAAACTTACCATATTTGTTACTAAAGTTCCCCAGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTGTGGGAACAAAACTTACCATATTTGTTACTAAAGTTCCCCAGTC  400

seq1  ATAGTTTGAAATTGAAAGTACTTTTCCCCTTTCCTAAACGTTCTCAATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTTGAAATTGAAAGTACTTTTCCCCTTTCCTAAACGTTCTCAATTT  450

seq1  TAGGATGACGAGATTAAAGTTTCTGAAAACCAATGTGTGGTAAACTGTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATGACGAGATTAAAGTTTCTGAAAACCAATGTGTGGTAAACTGTAA  500

seq1  GATTAATTTATAAAGGAAGGTTTAGCCATTATAATGCAAATTCATTGAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAATTTATAAAGGAAGGTTTAGCCATTATAATGCAAATTCATTGAAC  550

seq1  ACACTGGGCAAATGGAACATTGAAGGAATTCTAGTACTGTTTTTGATATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGGGCAAATGGAACATTGAAGGAATTCTAGTACTGTTTTTGATATA  600

seq1  TGCTATTGATCAACTAATTCTCCAAAATTACGCCTTAAACCTTTTGAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATTGATCAACTAATTCTCCAAAATTACGCCTTAAACCTTTTGAGTT  650

seq1  AACAATTTTATACATTTCAGCTTAATTGTTTGTTTATATTTTGTGTCTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATTTTATACATTTCAGCTTAATTGTTTGTTTATATTTTGTGTCTGT  700

seq1  GGAATCTGAATTACATTAGAAAATATTTGTTTTATAATTTTTTAAAAAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCTGAATTACATTAGAAAATATTTGTTTTATAATTTTTTAAAAAAC  750

seq1  ATCCCTATTGGCAACTTCTGAAACAAACTTTTCTCTCCCAAAGGTAATGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTATTGGCAACTTCTGAAACAAACTTTTCTCTCCCAAAGGTAATGG  800

seq1  TTTGCAACTTTATTATTAAATTATTAACTATATTCTGAGACTTCACAGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAACTTTATTATTAAATTATTAACTATATTCTGAGACTTCACAGTT  850

seq1  TTATTTCCAATCCTGGAAGCAATTTGCCAAAAAATTTTAAGTTTCAATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCCAATCCTGGAAGCAATTTGCCAAAAAATTTTAAGTTTCAATTT  900

seq1  TAGCACATGTATAAGACTACTTTCCTAAATAACAAAGTATCTAGATTTAA  950
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TAGCACATGTAT-AGACTACTTTCCTAAATAACAAAGTATCTAGATTTAA  949

seq1  AATAGACAATTGAATTTCATCTTTTCCAATATCTTTCCAACTCTGGGAAG  1000
      ||||||||||||||||||||||||||| ||||| || | |||||||||| 
seq2  AATAGACAATTGAATTTCATCTTTTCC-ATATCCTTTCCACTCTGGGAA-  997

seq1  GAATGCTATAAAGATCTATGTTTATAATTACATTGAAGTGGTTGATCACT  1050
      |||||||||||||||||||||||||||||||||   ||||| ||||||||
seq2  GAATGCTATAAAGATCTATGTTTATAATTACAT--GAGTGG-TGATCACT  1044

seq1  TCATTTTT  1058
      ||||||||
seq2  TCATTTTT  1052