BAC Information

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BAC

Clone NameB6Ng01-171A18
Chromosome5 (Build37)
Map Location 51,543,678 - 51,571,379
singlet/doubletdoublet
Overlap genenone
Upstream geneEG637307, LOC100041015, LOC242987, EG624734, LOC666265, LOC100041059
Downstream genePpargc1a, Dhx15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-171A18.bB6Ng01-171A18.g
ACCGA000033GA000034
length1,141408
definitionB6Ng01-171A18.b B6Ng01-171A18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,570,222 - 51,571,379)(51,543,678 - 51,544,091)
sequence
gaattctcttaagtaaattgcagagactttgttctgacattctacctact
gagcttatctgtgttgcaaattcccatctgcaagtggctcgatcactgga
gctaaatttagagattattgtgactttggatattatttctatgctctcta
atctgaactagtaaatgcacactcattttatccaagtattgcagatctct
aataatcaaaaatctagacactagagttagatgaacagtgaatcatctat
taatttactgcaaaatttataaaaaccctagcttgtatttacctgtgttt
gtaataaaatgaaagttatagtaagaaaacatgagagcttgagattgaaa
gatttttgtcaacttgttccccaaaggttgcaaataacatgtatcttatt
tgtttctatttataaagccatctacctttcagaaacaatgtctccctttg
taacttttcttaactcaaaatctttctgcctcagtctcacaagaactaga
ttctgccagtgtctggattctatttttttcttcagtgtctggattctaag
catttattttttactcatatttctgatgcatggttgtaatgtgtgcgtct
gggtcaagtactctccctgtatgttaagtgaacattaattatagattata
gttttccctgctctttagaagattgaagatattctaatgctatgaatcaa
cacaaaagtacattttgaatccatacatttaaaaaaggttgcccatagcc
attacgtcaacagatctatggatttttcacaaaataaacagcgtgtaaaa
tgtcattatagatgatgctatttttaaaacattgttaactaggtgtctgg
tacaggaggatggagtgaatgctttttttcatcaaccagtaagcataatt
taggaatacagggggctggagttgtcattcagttgatgaaacagtcttgc
accacataaagcatacatggcaatctttcttggagtgaataatgtatgag
aggagaaaaattaatattatagtaataaaaataaaaaaccagcaacacca
acaagaagctaacaaccaatcagccatagtcttattataatccacatgga
acttttctagatataagatgaggagaccagttagacttggt

tttgtttagttctgtaccccatttttaaatggggttatttgaatttctgg
agtccagcttcttaagctctgtatatattggatattagtcccctatcaga
tttaggattggtaaaaatcctttcccaatctgttggtggccctcatgtct
ctagctgcatatgtagcagaagatggcctagttagccatcactgagaaga
gaggccccttggtatttcaaactttatatgccccagtacaggggaatgcc
agggccaagaagcgggagtgggtgggtaggggagcagggcagggggaggg
tatagggaactttcgggatagtatttgaaatttgaaatgtatataaagaa
aatatctaataaaatattcaaaaaaatcaaagcgatttatagccaagaat
catggaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_51570222_51571379
seq2: B6Ng01-171A18.b_45_1185 (reverse)

seq1  ACCAAGTGCTCTAACTGGTCCTCCCTCATCTTATATCTTAGATATGTCTC  50
      ||||||   |||||||||||   |||||||||||||| |||| | ||  |
seq2  ACCAAG---TCTAACTGGTC--TCCTCATCTTATATC-TAGAAAAGTTCC  44

seq1  ATGTCGCATTTATATATAAGACCTATGGCTGATTTGGTTTGTTTGGTTTC  100
      |||| |   ||||| |||||| ||||||||||||  | ||||| | |   
seq2  ATGTGG--ATTATA-ATAAGA-CTATGGCTGATT--GGTTGTTAGCT---  85

seq1  TTTTGTTGGTGTTGCTGGTTTTTTTATTTTTATTACTTATTTATTTATTT  150
      | |||||||||||||||| ||||||||||||||||| |||     |||| 
seq2  TCTTGTTGGTGTTGCTGG-TTTTTTATTTTTATTAC-TAT---AATATTA  130

seq1  ATTTTTCTTCTCTCATACATTAATTCCACT-CAAGAAA-ATTGCCATGTA  198
      |||||||| |||||||||||||  | |||| ||||||| |||||||||||
seq2  ATTTTTCTCCTCTCATACATTA--TTCACTCCAAGAAAGATTGCCATGTA  178

seq1  TGCTTTATGTGGTGCAAGACTGTTTCATCAACTGAATGACAACTCCAG-C  247
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TGCTTTATGTGGTGCAAGACTGTTTCATCAACTGAATGACAACTCCAGCC  228

seq1  CCCTGTATT-CTTAATTATGCTTACTGGTTGATG-AAAAGAGCATTCACT  295
      ||||||||| || ||||||||||||||||||||| |||| ||||||||||
seq2  CCCTGTATTCCTAAATTATGCTTACTGGTTGATGAAAAAAAGCATTCACT  278

seq1  CCATCCTCCTGTACCAGACACCTAGTTAACAATGTTTTAAAAATAGCATC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCTCCTGTACCAGACACCTAGTTAACAATGTTTTAAAAATAGCATC  328

seq1  ATCTATAATGACATTTTACACGCTGTTTATTTTGTGAAAAATCCATAGAT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATAATGACATTTTACACGCTGTTTATTTTGTGAAAAATCCATAGAT  378

seq1  CTGTTGACGTAATGGCTATGGGCAACCTTTTTTAAATGTATGGATTCAAA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGACGTAATGGCTATGGGCAACCTTTTTTAAATGTATGGATTCAAA  428

seq1  ATGTACTTTTGTGTTGATTCATAGCATTAGAATATCTTCAATCTTCTAAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACTTTTGTGTTGATTCATAGCATTAGAATATCTTCAATCTTCTAAA  478

seq1  GAGCAGGGAAAACTATAATCTATAATTAATGTTCACTTAACATACAGGGA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGGGAAAACTATAATCTATAATTAATGTTCACTTAACATACAGGGA  528

seq1  GAGTACTTGACCCAGACGCACACATTACAACCATGCATCAGAAATATGAG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTACTTGACCCAGACGCACACATTACAACCATGCATCAGAAATATGAG  578

seq1  TAAAAAATAAATGCTTAGAATCCAGACACTGAAGAAAAAAATAGAATCCA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAATAAATGCTTAGAATCCAGACACTGAAGAAAAAAATAGAATCCA  628

seq1  GACACTGGCAGAATCTAGTTCTTGTGAGACTGAGGCAGAAAGATTTTGAG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTGGCAGAATCTAGTTCTTGTGAGACTGAGGCAGAAAGATTTTGAG  678

seq1  TTAAGAAAAGTTACAAAGGGAGACATTGTTTCTGAAAGGTAGATGGCTTT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAAAAGTTACAAAGGGAGACATTGTTTCTGAAAGGTAGATGGCTTT  728

seq1  ATAAATAGAAACAAATAAGATACATGTTATTTGCAACCTTTGGGGAACAA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAGAAACAAATAAGATACATGTTATTTGCAACCTTTGGGGAACAA  778

seq1  GTTGACAAAAATCTTTCAATCTCAAGCTCTCATGTTTTCTTACTATAACT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGACAAAAATCTTTCAATCTCAAGCTCTCATGTTTTCTTACTATAACT  828

seq1  TTCATTTTATTACAAACACAGGTAAATACAAGCTAGGGTTTTTATAAATT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTTATTACAAACACAGGTAAATACAAGCTAGGGTTTTTATAAATT  878

seq1  TTGCAGTAAATTAATAGATGATTCACTGTTCATCTAACTCTAGTGTCTAG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGTAAATTAATAGATGATTCACTGTTCATCTAACTCTAGTGTCTAG  928

seq1  ATTTTTGATTATTAGAGATCTGCAATACTTGGATAAAATGAGTGTGCATT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGATTATTAGAGATCTGCAATACTTGGATAAAATGAGTGTGCATT  978

seq1  TACTAGTTCAGATTAGAGAGCATAGAAATAATATCCAAAGTCACAATAAT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAGTTCAGATTAGAGAGCATAGAAATAATATCCAAAGTCACAATAAT  1028

seq1  CTCTAAATTTAGCTCCAGTGATCGAGCCACTTGCAGATGGGAATTTGCAA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAAATTTAGCTCCAGTGATCGAGCCACTTGCAGATGGGAATTTGCAA  1078

seq1  CACAGATAAGCTCAGTAGGTAGAATGTCAGAACAAAGTCTCTGCAATTTA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGATAAGCTCAGTAGGTAGAATGTCAGAACAAAGTCTCTGCAATTTA  1128

seq1  CTTAAGAGAATTC  1158
      |||||||||||||
seq2  CTTAAGAGAATTC  1141


seq1: chr5_51543678_51544091
seq2: B6Ng01-171A18.g_67_480

seq1  GAATTCTTTGTTTAGTTCTGTACCCCATTTTTAAATGGGGTTATTTGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTTAGTTCTGTACCCCATTTTTAAATGGGGTTATTTGAAT  50

seq1  TTCTGGAGTCCAGCTTCTTAAGCTCTGTATATATTGGATATTAGTCCCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGAGTCCAGCTTCTTAAGCTCTGTATATATTGGATATTAGTCCCCT  100

seq1  ATCAGATTTAGGATTGGTAAAAATCCTTTCCCAATCTGTTGGTGGCCCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGATTTAGGATTGGTAAAAATCCTTTCCCAATCTGTTGGTGGCCCTC  150

seq1  ATGTCTCTAGCTGCATATGTAGCAGAAGATGGCCTAGTTAGCCATCACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTCTAGCTGCATATGTAGCAGAAGATGGCCTAGTTAGCCATCACTG  200

seq1  AGAAGAGAGGCCCCTTGGTATTTCAAACTTTATATGCCCCAGTACAGGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGAGGCCCCTTGGTATTTCAAACTTTATATGCCCCAGTACAGGGG  250

seq1  AATGCCAGGGCCAAGAAGCGGGAGTGGGTGGGTAGGGGAGCAGGGCAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCAGGGCCAAGAAGCGGGAGTGGGTGGGTAGGGGAGCAGGGCAGGG  300

seq1  GGAGGGTATAGGGAACTTTCGGGATAGTATTTGAAATTTGAAATGTATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGTATAGGGAACTTTCGGGATAGTATTTGAAATTTGAAATGTATAT  350

seq1  AAAGAAAATATCTAATAAAATATTCAAAAAAATCAAAGCGATTTATAGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAATATCTAATAAAATATTCAAAAAAATCAAAGCGATTTATAGCC  400

seq1  AAGAATCATGGAAT  414
      ||||||||||||||
seq2  AAGAATCATGGAAT  414


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