BAC Information

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BAC

Clone NameB6Ng01-171E20
Chromosome5 (Build37)
Map Location 21,308,117 - 21,418,120
singlet/doubletdoublet
Overlap genePsmc2, Slc26a5, Reln
Upstream genePhtf2, LOC622367, Tmem60, Rsbn1l, Ptpn12, EG626903, A530088I07Rik, Fgl2, AI847670, Fbxl13, LOC625004, LOC667253, Armc10, AB112350, Pmpcb, Dnajc2
Downstream geneDnaja1-ps, LOC100041982, Orc5l, LOC100042049, LOC668232, LOC100042067, LOC671222, LOC625174, Lhfpl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-171E20.bB6Ng01-171E20.g
ACCGA000225GA000226
length8401,110
definitionB6Ng01-171E20.b B6Ng01-171E20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,417,286 - 21,418,120)(21,308,117 - 21,309,224)
sequence
gaattcatgaaaccatgttaataaaattgttgtattattttatattatta
atataattaatttatataactatcaggccattaatacaatgggatattca
ggaaaaaaaaatgttttaagggctggagagatgacttgggattaagagca
ctggttgccagaggagcaaggtttggtcctcagcacccacatggtggctc
acagtcacctatagctccagttccagggagtctcttgtagcctcagtagg
taaaaggcacccaagtggtgaacattcatacatgcaagcaaaacactcat
acacacaaaataaaaataagtaaatctttaaaaataaagtaatttaataa
gatcattgatataaaaaacaattccaatggaaaacagttaaaagtttttt
ttttcaaaaggaagtatgttttagctggcagataacattctgaataacta
gctaatagattagccaaaactgtctcagcctagtcatgtgttgtaaacat
ttttcccacagtcgtatcgagcaataagatcaacttcttatcattccgaa
taattacaaattatatagagttttttctcttttaattagatattttttat
ttacatttctgttatcccctttcctagtttcccctctgaaaatcccctac
ccccccccccccgcaacccacccattccagtacaaaaatctagaacctac
cggtctaaaaatgagcatatggctcttctttgaaaaaataaggcctctta
agaatctagaagattatttaaatttgaatttattaaaattaaaattaatt
ttttaaatttattaaaattaagaatatataattttttact
gaattctctctaccaagccagccatgaactcagagatccacctgcctctg
cctcttgagtgctggaattaaagacatgagccgcgctgcccggctcaaac
ttcaggtatttttaaaaagctttaggtgatactgattgagaatgctgtta
ggaaaggtgtgcagtatatttattataatttaaaagattttgaaaccaac
tctgtaataaccaaattttcttattagggagctcgaatggttcgtgagct
ttttgaaatggccaggacaaaaaaagcctgccttattttctttgatgaaa
ttgatgccattggaggtatgaatgatattttattgatttagttacttttt
agtgtgtgtggttaaaggacaaatctatgggagtcaattcttttctacca
tgttcaaactgggcaaaattccagccctgagcaaggaaagtggacacaag
gtctcatcccttcccatgaagcagtttgcagttggtgcctgctgggaaag
gagccctcgttattctccagtggagcgtcacagtttctatcaccctcacc
cagggcaggcctaggccaacacaaaacaaactgggttttgtctgcttttc
atttcattttgttttgctttgaaatattttgctttgcaattagttttata
acttcaaagtaggttgtgcacttagctgtaagggaaggctgtgagccaag
gggtggcattttcaggtcctgagtggtgatgctcgcagtggacatgagct
gcttctctgcctttcttctcaagggctcggtttgacgatggcgctggggg
tgacaatgaagtgcagagaaccatgctggagctcatcaatcagctggatg
gctttgatcctcgcggcaacatcaaggtgctcatggccactaaccgccct
gacactctggaaccagcgctcatgaaaccggggaggctggacaggaagat
tgagttcagcttacctgacttagaggtcaaaacgaaattgaattttagaa
aaaaattctcaacttggctctttttatacattttcatttagatattgtga
attccttaattttaagggccgaacgccactcttttagaattcacgctctg
cctcaatgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_21417286_21418120
seq2: B6Ng01-171E20.b_30_869 (reverse)

seq1  AGTAAAAAATTATATATTCTTAATTTTAATAA--TTTAAAAATTAATTTT  48
      ||||||||||||||||||||||||||||||||  || |||||||||||||
seq2  AGTAAAAAATTATATATTCTTAATTTTAATAAATTTAAAAAATTAATTTT  50

seq1  AATTTTAATTAATTCAATTTAAATTAATC-TCTAGATTCTTAAGAGGCCT  97
      ||||||||| ||||||| || || ||||| ||||||||||||||||||||
seq2  AATTTTAATAAATTCAAATTTAAATAATCTTCTAGATTCTTAAGAGGCCT  100

seq1  TATTTTT--CAAGAAGAGCCATATGCTCATTTCTAGACCGGTAGGTTCTA  145
      |||||||   |||||||||||||||||||||| |||||||||||||||||
seq2  TATTTTTTCAAAGAAGAGCCATATGCTCATTTTTAGACCGGTAGGTTCTA  150

seq1  GATTTTTGTACTGGAATGGGTGGGTTGCGGGGGGGGGGGGGTAGGGGATT  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTGTACTGGAATGGGTGGGTTGCGGGGGGGGGGGGGTAGGGGATT  200

seq1  TTCAGAGGGGAAACTAGGAAAGGGGATAACAGAAATGTAAATAAAAAATA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAGGGGAAACTAGGAAAGGGGATAACAGAAATGTAAATAAAAAATA  250

seq1  TCTAATTAAAAGAGAAAAAACTCTATATAATTTGTAATTATTCGGAATGA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATTAAAAGAGAAAAAACTCTATATAATTTGTAATTATTCGGAATGA  300

seq1  TAAGAAGTTGATCTTATTGCTCGATACGACTGTGGGAAAAATGTTTACAA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAGTTGATCTTATTGCTCGATACGACTGTGGGAAAAATGTTTACAA  350

seq1  CACATGACTAGGCTGAGACAGTTTTGGCTAATCTATTAGCTAGTTATTCA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGACTAGGCTGAGACAGTTTTGGCTAATCTATTAGCTAGTTATTCA  400

seq1  GAATGTTATCTGCCAGCTAAAACATACTTCCTTTTGAAAAAAAAAACTTT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTTATCTGCCAGCTAAAACATACTTCCTTTTGAAAAAAAAAACTTT  450

seq1  TAACTGTTTTCCATTGGAATTGTTTTTTATATCAATGATCTTATTAAATT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGTTTTCCATTGGAATTGTTTTTTATATCAATGATCTTATTAAATT  500

seq1  ACTTTATTTTTAAAGATTTACTTATTTTTATTTTGTGTGTATGAGTGTTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTATTTTTAAAGATTTACTTATTTTTATTTTGTGTGTATGAGTGTTT  550

seq1  TGCTTGCATGTATGAATGTTCACCACTTGGGTGCCTTTTACCTACTGAGG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGCATGTATGAATGTTCACCACTTGGGTGCCTTTTACCTACTGAGG  600

seq1  CTACAAGAGACTCCCTGGAACTGGAGCTATAGGTGACTGTGAGCCACCAT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAGAGACTCCCTGGAACTGGAGCTATAGGTGACTGTGAGCCACCAT  650

seq1  GTGGGTGCTGAGGACCAAACCTTGCTCCTCTGGCAACCAGTGCTCTTAAT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTGCTGAGGACCAAACCTTGCTCCTCTGGCAACCAGTGCTCTTAAT  700

seq1  CCCAAGTCATCTCTCCAGCCCTTAAAACATTTTTTTTTCCTGAATATCCC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGTCATCTCTCCAGCCCTTAAAACATTTTTTTTTCCTGAATATCCC  750

seq1  ATTGTATTAATGGCCTGATAGTTATATAAATTAATTATATTAATAATATA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTATTAATGGCCTGATAGTTATATAAATTAATTATATTAATAATATA  800

seq1  AAATAATACAACAATTTTATTAACATGGTTTCATGAATTC  835
      ||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATACAACAATTTTATTAACATGGTTTCATGAATTC  840

seq1: chr5_21308117_21309224
seq2: B6Ng01-171E20.g_64_1173

seq1  GAATTCTCTCTACCAAGCCAGCCATGAACTCAGAGATCCACCTGCCTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCTACCAAGCCAGCCATGAACTCAGAGATCCACCTGCCTCTG  50

seq1  CCTCTTGAGTGCTGGAATTAAAGACATGAGCCGCGCTGCCCGGCTCAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTGAGTGCTGGAATTAAAGACATGAGCCGCGCTGCCCGGCTCAAAC  100

seq1  TTCAGGTATTTTTAAAAAGCTTTAGGTGATACTGATTGAGAATGCTGTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGTATTTTTAAAAAGCTTTAGGTGATACTGATTGAGAATGCTGTTA  150

seq1  GGAAAGGTGTGCAGTATATTTATTATAATTTAAAAGATTTTGAAACCAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGGTGTGCAGTATATTTATTATAATTTAAAAGATTTTGAAACCAAC  200

seq1  TCTGTAATAACCAAATTTTCTTATTAGGGAGCTCGAATGGTTCGTGAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAATAACCAAATTTTCTTATTAGGGAGCTCGAATGGTTCGTGAGCT  250

seq1  TTTTGAAATGGCCAGGACAAAAAAAGCCTGCCTTATTTTCTTTGATGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAAATGGCCAGGACAAAAAAAGCCTGCCTTATTTTCTTTGATGAAA  300

seq1  TTGATGCCATTGGAGGTATGAATGATATTTTATTGATTTAGTTACTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGCCATTGGAGGTATGAATGATATTTTATTGATTTAGTTACTTTTT  350

seq1  AGTGTGTGTGGTTAAAGGACAAATCTATGGGAGTCAATTCTTTTCTACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGTGTGGTTAAAGGACAAATCTATGGGAGTCAATTCTTTTCTACCA  400

seq1  TGTTCAAACTGGGCAAAATTCCAGCCCTGAGCAAGGAAAGTGGACACAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAAACTGGGCAAAATTCCAGCCCTGAGCAAGGAAAGTGGACACAAG  450

seq1  GTCTCATCCCTTCCCATGAAGCAGTTTGCAGTTGGTGCCTGCTGGGAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCATCCCTTCCCATGAAGCAGTTTGCAGTTGGTGCCTGCTGGGAAAG  500

seq1  GAGCCCTCGTTATTCTCCAGTGGAGCGTCACAGTTTCTATCACCCTCACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCTCGTTATTCTCCAGTGGAGCGTCACAGTTTCTATCACCCTCACC  550

seq1  CAGGGCAGGCCTAGGCCAACACAAAACAAACTGGGTTTTGTCTGCTTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCAGGCCTAGGCCAACACAAAACAAACTGGGTTTTGTCTGCTTTTC  600

seq1  ATTTCATTTTGTTTTGCTTTGAAATATTTTGCTTTGCAATTAGTTTTATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATTTTGTTTTGCTTTGAAATATTTTGCTTTGCAATTAGTTTTATA  650

seq1  ACTTCAAAGTAGGTTGTGCACTTAGCTGTAAGGGAAGGCTGTGAGCCAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAAAGTAGGTTGTGCACTTAGCTGTAAGGGAAGGCTGTGAGCCAAG  700

seq1  GGGTGGCATTTTCAGGTCCTGAGTGGTGATGCTCGCAGTGGACATGAGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGCATTTTCAGGTCCTGAGTGGTGATGCTCGCAGTGGACATGAGCT  750

seq1  GCTTCTCTGCC-TTCTTCTCAGGGGCTCGGTTTGACGATGGCGCTGGGGG  799
      ||||||||||| ||||||||| ||||||||||||||||||||||||||||
seq2  GCTTCTCTGCCTTTCTTCTCAAGGGCTCGGTTTGACGATGGCGCTGGGGG  800

seq1  TGACAATGAAGTGCAGAGAACCATGCTGGAGCTCATCAATCAGCTGGATG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAATGAAGTGCAGAGAACCATGCTGGAGCTCATCAATCAGCTGGATG  850

seq1  GCTTTGATCCTCGCGGCAACATCAAGGTGCTCATGGCCACTAACCGCCCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGATCCTCGCGGCAACATCAAGGTGCTCATGGCCACTAACCGCCCT  900

seq1  GACACTCTGGACCCAGCGCTCATGAGACCGGGGAGGCTGGACAGGAAGAT  949
      ||||||||||| ||||||||||||| ||||||||||||||||||||||||
seq2  GACACTCTGGAACCAGCGCTCATGAAACCGGGGAGGCTGGACAGGAAGAT  950

seq1  TGAGTTCAGCTTACCTGACTTAGAGGTCAAAACAGAATTTGATTTTAGAA  999
      |||||||||||||||||||||||||||||||||  ||||  |||||||||
seq2  TGAGTTCAGCTTACCTGACTTAGAGGTCAAAACGAAATTGAATTTTAGAA  1000

seq1  AAAAATTCTTCAACTTTTGTCTTTTTATACATTTTCATTTTAATATATGT  1049
      |||||||| |||||||   |||||||||||||||||||||  |||| |||
seq2  AAAAATTC-TCAACTTGGCTCTTTTTATACATTTTCATTTAGATAT-TGT  1048

seq1  GAATTCCTTAATTTTTAGGGTCGAACGCACATCTTTAAG-ATTCACGCTC  1098
      ||||||||||||||| |||| |||||||   ||||| || ||||||||||
seq2  GAATTCCTTAATTTTAAGGGCCGAACGCCACTCTTTTAGAATTCACGCTC  1098

seq1  --GCTCAATGAG  1108
         |||||||||
seq2  TGCCTCAATGAG  1110