BAC Information

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BAC

Clone NameB6Ng01-171H22
Chromosome5 (Build37)
Map Location 142,859,576 - 143,040,262
singlet/doubletdoublet
Overlap geneFoxk1, C330006K01Rik, D930005D10Rik, Papolb, Mmd2
Upstream geneSdk1, LOC666727
Downstream geneWipi2, Slc29a4, Tnrc18, LOC100038954, LOC100041004, LOC100038972, LOC100038984, LOC100042525, LOC100038888, Zfp469, LOC666788, Fbxl18, D430018E03Rik, LOC100042558, Actb, Fscn1, 2810055G22Rik, LOC667809, Olfr718-ps1, LOC640324, LOC100042605, Rbak, 4933411G11Rik, Spdyb, Zfp12, Zfp316
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-171H22.bB6Ng01-171H22.g
ACCGA000363GA000364
length948814
definitionB6Ng01-171H22.b B6Ng01-171H22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(143,039,315 - 143,040,262)(142,859,576 - 142,860,382)
sequence
gaattcaacatagtgtcccatgcagacattactaattgattctgtgctca
tgatggaaccttttggctggcctggtgtgttaggagacaggatcacagaa
taactattagaagtcactgtatgtaggagcatgcttatctctgggcacca
ttaccttctactcccttctgtccatatttgaggaagttctttaagtgagc
tctttggaggcagtgcagggagaccaaggcatacattccaaacaggtcct
gacactctgttccgccatggttggctcttggttctagaggagctgagatc
tgggatgaagatgctgatacctggccattttttctcatctcaaagaatct
ggagaaaggatgctgtgttcaccagaggggcttttcctcagtgtcaggaa
acggctctcggaggcccctcagatggccctaggagcagggtcttcctcta
tcagaatgggtggaatatcttcatccctcaacctctgaagtgacctgtca
gctaagagcatggctcccaggggcctgtcctcagccacctctattcctgg
gctagcctcatcctaagatgccacatggacactggctgagtattgagcag
ctggcctggctcctgacctgaactgacatctcagactctctgcaagagtc
tgctggaaatccaaggtcttgttcaacaactgccagccagatgggtgtgg
gcaagggtgtgccaagacagggtgccttatactttgttctagtgcattcc
aaggtgtttcaggcttcagcacctggaatcccatatgtcaaagccagtat
taaatcaagtttaatgcattcctcagaaagatggagccagtgagctttaa
gattggttttgtctagcctgcttgtgtacatgcgtgtctgtctgtatgaa
catgtgtgactctctctctctctctctctctctctctctctctctctg
gaattcaggtactttggggagggggttgctttattttgttttgtttgaaa
tagggtttcaggctggaaagataactcagtggctgaaagcatttgctgct
cttacagaggacctgagtttggatcctagtgctcattcggggcagctcac
gcctgcctattactccagcagacccatcctcctctggcttctaggagctc
cacgctcatgtgtgcagacacacagaaagaaaatgaatctttatttattt
ctattttctatgtattggtgttttgcctgcatgtctgtctgtgtgaggtc
gtcagatcttgaggttacagacaattgttagctaccatgtggttgctggg
aattgaacctgtatcctctggaagagcagtcagtgcccctaaccaaactg
aaccacctctccagccccctcccaaaaaaatgaattttaaagaagggggg
ccagtatttcttatgaagccagggctagcctcaaatttattttgtagcct
aggctggcctggaacttactcagtatctagcctggctttgacctctggat
ccttcagctatgatcttccaagtgctgggattacaggatgtgcagcatca
cccctgggatgggatgagcagtgccttttcctttacacagaaataaaaga
ctccgtggagataagaaagatgttgaaacaggaacctgtatatcaataac
ctgtggggtaaatgctccgcccagaaagtgtgggttcatttcatccagtt
ctgctgggtttttggctaacacggcaatccagctgtgttagcccaggcat
ggtctggtaagtcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_143039315_143040262
seq2: B6Ng01-171H22.b_44_991 (reverse)

seq1  CAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTCACACATGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTCACACATGTT  50

seq1  CATACAGACAGACACGCATGTACACAAGCAGGCTAGACAAAACCAATCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAGACAGACACGCATGTACACAAGCAGGCTAGACAAAACCAATCTT  100

seq1  AAAGCTCACTGGCTCCATCTTTCTGAGGAATGCA-TAAACTTGATTTAAT  149
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AAAGCTCACTGGCTCCATCTTTCTGAGGAATGCATTAAACTTGATTTAAT  150

seq1  ACTGGCTTTGACATATGGGATTCCAGGTGCTGAAGCCCTGAAACACCTTG  199
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ACTGGCTTTGACATATGGGATTCCAGGTGCTGAAG-CCTGAAACACCTTG  199

seq1  GAATGCACTAGAACAAAGTATAAGGCACCCTGTCTTGGCACACCCTTGCC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCACTAGAACAAAGTATAAGGCACCCTGTCTTGGCACACCCTTGCC  249

seq1  CACACCCATCTGGCTGGCAGTTGTTGAACAAGACCTTGGATTTCCAGCAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCCATCTGGCTGGCAGTTGTTGAACAAGACCTTGGATTTCCAGCAG  299

seq1  ACTCTTGCAGAGAGTCTGAGATGTCAGTTCAGGTCAGGAGCCAGGCCAGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTGCAGAGAGTCTGAGATGTCAGTTCAGGTCAGGAGCCAGGCCAGC  349

seq1  TGCTCAATACTCAGCCAGTGTCCATGTGGCATCTTAGGATGAGGCTAGCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAATACTCAGCCAGTGTCCATGTGGCATCTTAGGATGAGGCTAGCC  399

seq1  CAGGAATAGAGGTGGCTGAGGACAGGCCCCTGGGAGCCATGCTCTTAGCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAATAGAGGTGGCTGAGGACAGGCCCCTGGGAGCCATGCTCTTAGCT  449

seq1  GACAGGTCACTTCAGAGGTTGAGGGATGAAGATATTCCACCCATTCTGAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGTCACTTCAGAGGTTGAGGGATGAAGATATTCCACCCATTCTGAT  499

seq1  AGAGGAAGACCCTGCTCCTAGGGCCATCTGAGGGGCCTCCGAGAGCCGTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAAGACCCTGCTCCTAGGGCCATCTGAGGGGCCTCCGAGAGCCGTT  549

seq1  TCCTGACACTGAGGAAAAGCCCCTCTGGTGAACACAGCATCCTTTCTCCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGACACTGAGGAAAAGCCCCTCTGGTGAACACAGCATCCTTTCTCCA  599

seq1  GATTCTTTGAGATGAGAAAAAATGGCCAGGTATCAGCATCTTCATCCCAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTTTGAGATGAGAAAAAATGGCCAGGTATCAGCATCTTCATCCCAG  649

seq1  ATCTCAGCTCCTCTAGAACCAAGAGCCAACCATGGCGGAACAGAGTGTCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAGCTCCTCTAGAACCAAGAGCCAACCATGGCGGAACAGAGTGTCA  699

seq1  GGACCTGTTTGGAATGTATGCCTTGGTCTCCCTGCACTGCCTCCAAAGAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTGTTTGGAATGTATGCCTTGGTCTCCCTGCACTGCCTCCAAAGAG  749

seq1  CTCACTTAAAGAACTTCCTCAAATATGGACAGAAGGGAGTAGAAGGTAAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTTAAAGAACTTCCTCAAATATGGACAGAAGGGAGTAGAAGGTAAT  799

seq1  GGTGCCCAGAGATAAGCATGCTCCTACATACAGTGACTTCTAATAGTTAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCCCAGAGATAAGCATGCTCCTACATACAGTGACTTCTAATAGTTAT  849

seq1  TCTGTGATCCTGTCTCCTAACACACCAGGCCAGCCAAAAGGTTCCATCAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGATCCTGTCTCCTAACACACCAGGCCAGCCAAAAGGTTCCATCAT  899

seq1  GAGCACAGAATCAATTAGTAATGTCTGCATGGGACACTATGTTGAATTC  948
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACAGAATCAATTAGTAATGTCTGCATGGGACACTATGTTGAATTC  948

seq1: chr5_142859576_142860382
seq2: B6Ng01-171H22.g_67_879

seq1  GAATTCAGGTACTTTGGGGAGGGGGTTGCTTTATTTTGTTTTGTTTGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTACTTTGGGGAGGGGGTTGCTTTATTTTGTTTTGTTTGAAA  50

seq1  TAGGGTTTCAGGCTGGAAAGATAACTCAGTGGCTGAAAGCATTTGCTGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTTTCAGGCTGGAAAGATAACTCAGTGGCTGAAAGCATTTGCTGCT  100

seq1  CTTACAGAGGACCTGAGTTTGGATCCTAGTGCTCATTCGGGGCAGCTCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAGAGGACCTGAGTTTGGATCCTAGTGCTCATTCGGGGCAGCTCAC  150

seq1  GCCTGCCTATTACTCCAGCAGACCCATCCTCCTCTGGCTTCTAGGAGCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCCTATTACTCCAGCAGACCCATCCTCCTCTGGCTTCTAGGAGCTC  200

seq1  CACGCTCATGTGTGCAGACACACAGAAAGAAAATGAATCTTTATTTATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCTCATGTGTGCAGACACACAGAAAGAAAATGAATCTTTATTTATTT  250

seq1  CTATTTTCTATGTATTGGTGTTTTGCCTGCATGTCTGTCTGTGTGAGGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTCTATGTATTGGTGTTTTGCCTGCATGTCTGTCTGTGTGAGGTC  300

seq1  GTCAGATCTTGAGGTTACAGACAATTGTTAGCTACCATGTGGTTGCTGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGATCTTGAGGTTACAGACAATTGTTAGCTACCATGTGGTTGCTGGG  350

seq1  AATTGAACCTGTATCCTCTGGAAGAGCAGTCAGTGCCCCTAACCAAACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAACCTGTATCCTCTGGAAGAGCAGTCAGTGCCCCTAACCAAACTG  400

seq1  AACCACCTCTCCAGCCCCCTCCCAAAAAAATGAATTTTAAAGAAGGGGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACCTCTCCAGCCCCCTCCCAAAAAAATGAATTTTAAAGAAGGGGGG  450

seq1  CCAGTATTTCTTATGAAGCCAGGGCTAGCCTCAAATTTATTTTGTAGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTATTTCTTATGAAGCCAGGGCTAGCCTCAAATTTATTTTGTAGCCT  500

seq1  AGGCTGGCCTGGAACTTACTCAGTATCTAGCCTGGCTTTGACCTCTGGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGGCCTGGAACTTACTCAGTATCTAGCCTGGCTTTGACCTCTGGAT  550

seq1  CCTTCAGCTATGATCTTCCAAGTGCTGGGATTACA-GATGTGCAGCATCA  599
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CCTTCAGCTATGATCTTCCAAGTGCTGGGATTACAGGATGTGCAGCATCA  600

seq1  CCCCTGGGATGGGATGAGCAGTGCC-TTTCCTTTACACAGAAATAAAAGA  648
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CCCCTGGGATGGGATGAGCAGTGCCTTTTCCTTTACACAGAAATAAAAGA  650

seq1  CTCCGTGGAGATAAGAAAGATGTTGAAACAGGAACCTGTATATCAATAAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGTGGAGATAAGAAAGATGTTGAAACAGGAACCTGTATATCAATAAC  700

seq1  CTGTGGGGTAAATGCTCCGCCCAGAAGGTGTGGGTTCATTTCATCCAGTT  748
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CTGTGGGGTAAATGCTCCGCCCAGAAAGTGTGGGTTCATTTCATCCAGTT  750

seq1  CTGCTTGGTTTTTTGCTAACACGGC-AGCCAGCTGTG-TAGCCCAGGC-T  795
      ||||| ||||||| ||||||||||| | ||||||||| |||||||||| |
seq2  CTGCTGGGTTTTTGGCTAACACGGCAATCCAGCTGTGTTAGCCCAGGCAT  800

seq1  TGTCTGG-AAGTC  807
       |||||| |||||
seq2  GGTCTGGTAAGTC  813