BAC Information

Click to search

BAC

Clone NameB6Ng01-171K12
Chromosome5 (Build37)
Map Location 57,286,742 - 57,287,876
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100041335, LOC100041349, LOC666455, LOC625721, EG666465, Pcdh7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-171K12.bB6Ng01-171K12.g
ACCGA000479GA000480
length1,1431,008
definitionB6Ng01-171K12.b B6Ng01-171K12.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttttatggagctgtagtctttaccagattcttacttctttaaac
agaaccactctggatcacagaacaccattcaaactataatctcattgcat
cacctcttcttctctgaatcttacacgtcatgatctttgaataggaaatt
cattaaaataacacaaatctatattgcttatattataaaatatattaaca
tataagagtgttacattcactaatagacaaatttttgttgaatttaattc
tcataaagatattgagttagagtagacttggggtcagaaaaaaatattct
ctaattatctttcaggtaataggagaaaaatgaatgtgatggactaaaga
tagccatcccaataattcagcaatagatgtacaagcttttagtgcatcta
ctcaatgctgtcaacatcattttgattaggatgaattccaaatttctctg
tcaactttaacaatctaataattataataataaaataatatttttgctac
agcctacataccactgtcaatttgtaaaaagtttcactagctcattaaat
aagataaaagagtgttagtttactatagatgaaaaataactatggttttc
agttgcttaatttcaaataagctattcacggcaattaaacaaattcagaa
agacagaataaaggtcctactaagactacaaaggcaatgagttaatgttc
atatctggtttttatcagaggcaatttgtatgattgtgataacccagtaa
caattggtttgaagattagcaaaactaaaccatgattcctggagatgagc
caattagataattatattttttattcttctatccctactatagattttga
atactattatgattcatcttatttttctttttatacagcattcaaatgta
agataaagctgttaaccttgggctcattttcttggcttctttctgtagag
cgataaaatttagaaggtcaaatgggaattacattcagtggtgctactcg
gtatttaatattttttactattagtataacgatacttcattctacagagg
ggtagcagagcatcaggtcatattttgttaatgacatgataccaaactct
gtgctgtgtgttgtgtgtctaggaagagaattagccttgattt

gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaacactgagat
tccacttcactccagtcagaatggctaagatcaaaaactcaggtgacagc
agatgctggcgaggatgtggagaaaggggaacactcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatcccgcaatacctctcctgggc
atatatccaatggaatactactcagctatttaaaaaaatgaatttatgaa
attcctaggcaaatggatggacctggagggtatcatcctgagtgaagtaa
cccaatcacaaaggaactcgcacaatatgtactcactgataagtggatat
tagcccagaaacttaggataccgaagatataagatacaacttgccaaacg
catgaaattcaagaagaacgaagaccaaagtgtggacactttaccctttc
ttaaaaatgggaacaatttggagctgtgacaaaaggatggaccatctagt
gattgccatatgcagggatccataccataatcagcttccaaatgctgaca
ccattgcatacactagcaagatttcgctgaaaggacccagatacagctct
ctcttgtgagactatgccagggcctagcaaacacagaagtggatgatcac
agtcagctattggatgggtcacagggcccctaatggaggagctagagaaa
ttacccaaggagctaaagggaactgcaaccctataggtggaacaacaata
tgaactaaccagtacccgggagctcatatctttagctgcatatgtatcaa
aagtggcctagttggccatcactgcaaagaaatgcccattgacttgcaaa
ctttatatgcccccagtacagggaacgcaggccaaaaagggggagtgggt
ggtaggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_57286742_57287876
seq2: B6Ng01-171K12.b_42_1184

seq1  GAATTCTTTTATGGAGCTGTAGTCTTTACCAGATTCTTACTTCTTTAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTATGGAGCTGTAGTCTTTACCAGATTCTTACTTCTTTAAAC  50

seq1  AGAACCACTCTGGATCACAGAACACCATTCAAACTATAATCTCATTGCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCACTCTGGATCACAGAACACCATTCAAACTATAATCTCATTGCAT  100

seq1  CACCTCTTCTTCTCTGAATCTTACACGTCATGATCTTTGAATAGGAAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCTTCTTCTCTGAATCTTACACGTCATGATCTTTGAATAGGAAATT  150

seq1  CATTAAAATAACACAAATCTATATTGCTTATATTATAAAATATATTAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAAATAACACAAATCTATATTGCTTATATTATAAAATATATTAACA  200

seq1  TATAAGAGTGTTACATTCACTAATAGACAAATTTTTGTTGAATTTAATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGAGTGTTACATTCACTAATAGACAAATTTTTGTTGAATTTAATTC  250

seq1  TCATAAAGATATTGAGTTAGAGTAGACTTGGGGTCAGAAAAAAATATTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAAGATATTGAGTTAGAGTAGACTTGGGGTCAGAAAAAAATATTCT  300

seq1  CTAATTATCTTTCAGGTAATAGGAGAAAAATGAATGTGATGGACTAAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTATCTTTCAGGTAATAGGAGAAAAATGAATGTGATGGACTAAAGA  350

seq1  TAGCCATCCCAATAATTCAGCAATAGATGTACAAGCTTTTAGTGCATCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCATCCCAATAATTCAGCAATAGATGTACAAGCTTTTAGTGCATCTA  400

seq1  CTCAATGCTGTCAACATCATTTTGATTAGGATGAATTCCAAATTTCTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATGCTGTCAACATCATTTTGATTAGGATGAATTCCAAATTTCTCTG  450

seq1  TCAACTTTAACAATCTAATAATTATAATAATAAAATAATATTTTTGCTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTTTAACAATCTAATAATTATAATAATAAAATAATATTTTTGCTAC  500

seq1  AGCCTACATACCACTGTCAATTTGTAAAAAGTTTCACTAGCTCATTAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTACATACCACTGTCAATTTGTAAAAAGTTTCACTAGCTCATTAAAT  550

seq1  AAGATAAAAGAGTGTTAGTTTACTATAGATGAAAAATAACTATGGTTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAAAAGAGTGTTAGTTTACTATAGATGAAAAATAACTATGGTTTTC  600

seq1  AGTTGCTTAATTTCAAATAAGCTATTCACGGCAATTAAACAAATTCAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCTTAATTTCAAATAAGCTATTCACGGCAATTAAACAAATTCAGAA  650

seq1  AGACAGAATAAAGGTCCTACTAAGACTACAAAGGCAATGAGTTAATGTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGAATAAAGGTCCTACTAAGACTACAAAGGCAATGAGTTAATGTTC  700

seq1  ATATCTGGTTTTTATCAGAGGCAATTTGTATGATTGTGATAACCCAGTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTGGTTTTTATCAGAGGCAATTTGTATGATTGTGATAACCCAGTAA  750

seq1  CAATTGGTTTGAAGATTAGCAAAACTAAACCATGATTCCTGGAGATGAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGGTTTGAAGATTAGCAAAACTAAACCATGATTCCTGGAGATGAGC  800

seq1  CAATTAGATAATTATATTTTTTATTCTTCTATCCCTACTATAGATTTTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTAGATAATTATATTTTTTATTCTTCTATCCCTACTATAGATTTTGA  850

seq1  ATACTATTATGATTCATCTTATTTTTCTTTTTATACAGCATTCAAATGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTATTATGATTCATCTTATTTTTCTTTTTATACAGCATTCAAATGTA  900

seq1  AGATAAAGCTGTTAACCTTGGGCTCATTTTCTTGGCTTCTTTCTGTAGAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAAGCTGTTAACCTTGGGCTCATTTTCTTGGCTTCTTTCTGTAGAG  950

seq1  CGATAAAA-TTAGAAGGTCAAATGGAATTTACATTCAGTGGTGCTACTCG  999
      |||||||| |||||||||||||||| | ||||||||||||||||||||||
seq2  CGATAAAATTTAGAAGGTCAAATGGGAATTACATTCAGTGGTGCTACTCG  1000

seq1  GTATT--ATA-TTTTTACTATTAGTAT-AGGATACTTCATTCTACAGAGG  1045
      |||||  ||| |||||||||||||||| | ||||||||||||||||||||
seq2  GTATTTAATATTTTTTACTATTAGTATAACGATACTTCATTCTACAGAGG  1050

seq1  GTAAGCAAGAGAATCAAGTCATATTTTGGTAATGACATTGATA-CAAACT  1094
      |  ||| |||| |||| ||||||||||| |||||||| ||||| ||||||
seq2  GGTAGC-AGAGCATCAGGTCATATTTTGTTAATGACA-TGATACCAAACT  1098

seq1  CTGTGCCTGTGTG-TGTGT-CCTAGG-AGAG-ATTAG-CATGATTT  1135
      ||||| ||||||| |||||  ||||| |||| ||||| | ||||||
seq2  CTGTG-CTGTGTGTTGTGTGTCTAGGAAGAGAATTAGCCTTGATTT  1143


| Home | SequenceCutter | Blast | Download |