BAC Information

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BAC

Clone NameB6Ng01-171O11
Chromosome5 (Build37)
Map Location 46,429,219 - 46,430,304
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040737, Qdpr, EG624224, Lap3, LOC100040762, Med28, 9630031F12Rik, 9630001P10Rik, 1600023N17Rik, Lcorl, LOC100041576
Downstream geneEG666103
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-171O11.bB6Ng01-171O11.g
ACCGA000665GA000666
length1,1531,077
definitionB6Ng01-171O11.b B6Ng01-171O11.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcttttagaagcacctgaaaaaa
tgttcaacatccttaatcatcagggaaatgcaaatcaaaacaatcctgag
attctacttcacaccagtcaaaatggctaagatcaaaaattcaggtgaca
gcagatgctggcgaggatgtggagaaagaggaacactcctctattgctgg
tgggattgcaagcttgtacaaccactctggaaatcagtatggcagttcct
cagaaaattggacatagtactaccagaggatcccgcaatacatctcctgg
gcatatatccagaagatgttccaaccggtaagaaggacacatgctccact
atgttcatagcagccttatttataatagccagaagctgggaagaacccag
atgcccctcaacagaggaatggatacagaaaatgtagtacatttacacaa
tggagtactactcagctattaaaaggaatgaatttatgaaattcctaggc
aaatggatggacctggagggcatcaccctgagtgaggtaacccaatcaca
aaagaactcacacaatatgtactcactgataagtggaaattaacccagaa
acttagtatagtgagatataaggtacaatatgtaaaacatatgaaactga
agaagaacgaagaccaaagtgtggacactttgccccttcttagaattggg
aacaaaacacctatggaaggagttacagagacacagtttggagctgagac
aaaaggatggaccatctagagactgccatatctggagatccatcccataa
tcagcctccaaacgctgataccattgcatacactagcaagattttgctga
aaggacccagatatagctgtctcttgtgagactatgccggggcctagcaa
cacagaagtggatgctcacagtcagcttattgatggatcaccaggccccc
aatggaggagctagagaaagtaacctagagctaagggattctgcaacctt
atagtgacaccatattgactaccagtaccccccagagctcgtgtctctag
ctgcatagtatcagagattgctagtcagttgaacaaaggccaatgttggt
aactttatctgctcagtacaggattgacatgcccaaaattggaattgttg
atg
gaattcacttgccagtcattgtagctatatcttcacaagtaattcataca
agctatatattcttgtatgtaactcctgagaaatgggagatgaaaacatt
tcttgatgttttatacttaagggaactactgtcataagaaatgtattgca
ctagttatcactattgttttgtgcaataatatcaaattttcatatattac
aagaaaatgtaagtaaaatcctcagaccaaaattataatattattttgtg
gaaagctgatcacttttgaacagacagctttaggaactatgtccaaaata
ttaattcactatttgtataacaatattataaccagtttagatacactaaa
aattgcaaacattgagtagctcatagattcttggattataaatctggcta
cagtttaactgaattcatcttaaagactactacatgctatttgaatgttt
aatggtgctactcagagacaggtgggatcaagtgggtggtcccttagcgc
attacatcatactttccaagagaatttaggaaccctgaccaaaaaaagag
gaatagccttatcatatacctccataattatcatttgatgccagcatcag
agaaccaaagcaatagttgtatgtgactttaaacttgaatcttcaggaaa
attagttaattgattctaagttaattatcccaggtattttattatgtgag
ggaaagctgcctaacatgaggtatttcatgaggcaataatcaaggtgctg
tctgagtagagttgaagctgattccacattcgaatcacttttcataggat
ttcattcccttttagaatctagacagttgcactattagaaagtttcactt
tctgctgataatccatcttgagtctctttccttgtgaacttcaacattgg
ggtgattacagcactgttatcatcagagataggagataccatgagctaga
ccaaattttgaagaaagaatttatatagtcacttaccaagtggctgtttt
tgtctcttgattcacatcgtgctgcatagcatagctagcacaccagtctc
aatgatatggctacggactatggaacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_46429219_46430304
seq2: B6Ng01-171O11.g_69_1145 (reverse)

seq1  GGTT-CATAGTCTGTAG-CATATCATTTGAGACTGGTGTGCTAGCTATTG  48
      |||| ||||||| |||| ||||||| ||||||||||||||||||||| ||
seq2  GGTTCCATAGTCCGTAGCCATATCA-TTGAGACTGGTGTGCTAGCTA-TG  48

seq1  CCTTAATGCAGCACGATGTGAAATCCAGGAAGACAAAAACAGCCACTTTG  98
      |    ||||||||||||||| |||| ||  |||||||||||||||| |||
seq2  C---TATGCAGCACGATGTG-AATCAAG--AGACAAAAACAGCCAC-TTG  91

seq1  GTAAGTTGACTATATAAAATTCTTTCTTCAAAATTGGTTCTAGCTCATGG  148
      ||||| ||||||||| ||||||||||||||||||| | ||||||||||||
seq2  GTAAG-TGACTATAT-AAATTCTTTCTTCAAAATTTGGTCTAGCTCATGG  139

seq1  TATCTTCCTATCTCTGATGAT-ACAGTGCTGTTAATCA-CCCAATGTTGA  196
      |||| |||||||||||||||| ||||||||| |||||| |||||||||||
seq2  TATC-TCCTATCTCTGATGATAACAGTGCTG-TAATCACCCCAATGTTGA  187

seq1  AGTTCACAAGGAAAGAGACTCAAGATGGATTATCAGCAAGAAAGTGAAAC  246
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGTTCACAAGGAAAGAGACTCAAGATGGATTATCAGC-AGAAAGTGAAAC  236

seq1  TTTCTAATAGTGCAACTGTCTAGATTCTAAAA-GGAATGAAATCCTATGA  295
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TTTCTAATAGTGCAACTGTCTAGATTCTAAAAGGGAATGAAATCCTATGA  286

seq1  AAAGTGATTCGAATGTGGAATCAGCTTCAACTCTACTCAGACAGCACCTT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGATTCGAATGTGGAATCAGCTTCAACTCTACTCAGACAGCACCTT  336

seq1  GATTATTGCCTCATGAAATACCTCATGTTAGGCAGCTTTCCCTCACATAA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATTGCCTCATGAAATACCTCATGTTAGGCAGCTTTCCCTCACATAA  386

seq1  TAAAATACCTGGGATAATTAACTTAGAATCAATTAACTAATTTTCCTGAA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATACCTGGGATAATTAACTTAGAATCAATTAACTAATTTTCCTGAA  436

seq1  GATTCAAGTTTAAAGTCACATACAACTATTGCTTTGGTTCTCTGATGCTG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCAAGTTTAAAGTCACATACAACTATTGCTTTGGTTCTCTGATGCTG  486

seq1  GCATCAAATGATAATTATGGAGGTATATGATAAGGCTATTCCTCTTTTTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCAAATGATAATTATGGAGGTATATGATAAGGCTATTCCTCTTTTTT  536

seq1  TGGTCAGGGTTCCTAAATTCTCTTGGAAAGTATGATGTAATGCGCTAAGG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCAGGGTTCCTAAATTCTCTTGGAAAGTATGATGTAATGCGCTAAGG  586

seq1  GACCACCCACTTGATCCCACCTGTCTCTGAGTAGCACCATTAAACATTCA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACCCACTTGATCCCACCTGTCTCTGAGTAGCACCATTAAACATTCA  636

seq1  AATAGCATGTAGTAGTCTTTAAGATGAATTCAGTTAAACTGTAGCCAGAT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCATGTAGTAGTCTTTAAGATGAATTCAGTTAAACTGTAGCCAGAT  686

seq1  TTATAATCCAAGAATCTATGAGCTACTCAATGTTTGCAATTTTTAGTGTA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAATCCAAGAATCTATGAGCTACTCAATGTTTGCAATTTTTAGTGTA  736

seq1  TCTAAACTGGTTATAATATTGTTATACAAATAGTGAATTAATATTTTGGA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAACTGGTTATAATATTGTTATACAAATAGTGAATTAATATTTTGGA  786

seq1  CATAGTTCCTAAAGCTGTCTGTTCAAAAGTGATCAGCTTTCCACAAAATA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTTCCTAAAGCTGTCTGTTCAAAAGTGATCAGCTTTCCACAAAATA  836

seq1  ATATTATAATTTTGGTCTGAGGATTTTACTTACATTTTCTTGTAATATAT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTATAATTTTGGTCTGAGGATTTTACTTACATTTTCTTGTAATATAT  886

seq1  GAAAATTTGATATTATTGCACAAAACAATAGTGATAACTAGTGCAATACA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTTGATATTATTGCACAAAACAATAGTGATAACTAGTGCAATACA  936

seq1  TTTCTTATGACAGTAGTTCCCTTAAGTATAAAACATCAAGAAATGTTTTC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTATGACAGTAGTTCCCTTAAGTATAAAACATCAAGAAATGTTTTC  986

seq1  ATCTCCCATTTCTCAGGAGTTACATACAAGAATATATAGCTTGTATGAAT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCCATTTCTCAGGAGTTACATACAAGAATATATAGCTTGTATGAAT  1036

seq1  TACTTGTGAAGATATAGCTACAATGACTGGCAAGTGAATTC  1086
      |||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGTGAAGATATAGCTACAATGACTGGCAAGTGAATTC  1077