BAC Information

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BAC

Clone NameB6Ng01-172A20
Chromosome5 (Build37)
Map Location 80,180,962 - 80,338,449
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC100039506, LOC100039384
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-172A20.bB6Ng01-172A20.g
ACCGA000773GA000774
length1,063554
definitionB6Ng01-172A20.b B6Ng01-172A20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,337,934 - 80,338,449)(80,180,962 - 80,181,520)
sequence
gaattcaaagctatttttctctttcacttctattagattcactgtgtcag
gttttatcagaagtccttgctctacttagacatgagcgttgtacagggcg
attaatatggatcaactttcattcttctatgtgcagatcaccaggtagac
cagcaccacttgttaaagagactttgtttttttaccactgtatggttttg
gtttctttgtcaaagatcaagtgtccatccatcagtttctttggaaatat
ttctggttcttcagttctattccattgatcatcctgtctctatatcaatg
ccaggagttttttatgacgatcactctgtagtagagcttgaggtcatgga
tggtgatttcccccagttattttattattgagaattgtgttggcaatccg
gtttgtttgtttgtttttccatatgaagttgtaattgctctttccatgtg
tgggaataattctattggattttgatggtaactgcattcaatctaaagat
tccttttggtaagatgggcattttcattatgttaattgtacagcatggga
ggtctttgatttctttcttcagggacttgaagttcttgtacagctctttc
acttgcttggttagagtcaccaataccaagaaattttatatcatttgtga
ctattgtaaatggggctgtttccctaatttctttttcagcccatttatca
tttgcataatggaaggttacttattagtttgagttaattttatatcctgc
cacttggctgaagttgtttttcagctttaggagtttctctggtagaaact
ttgggagatggtttatgtattctcacatataatctgcgaagagtgatacc
atgacatttactttttcacttcatatctccttgttcttctatggtgtctt
actgttctagctagaacctcaagtactaattttcaacagatagggagaag
agtgggcagccctttcttgttcctgattgagtgaagttgcttcaaatttc
tttcccattttatctgaaatatttctatatgacaagggtccatggattta
agtgagtttaaaa

tgtgaggtaaacagttttactggagacaggaagaacacatcaatttgcta
ttcaatattaaattatcatcaccaaaatcatatatttaatactaaaatta
tacattctgaagaggttttaattttatattaaggggtgactacctacatc
catatctacacctgtgtctctattcatgtctatctagtctatctagtcca
tctatctatctatctatctatctatctatctatctatctatctgtatatc
tatctatctatcaatcattcatagatagatagatagatagataggtagat
agatataataaaaatggcttgtttatatttttaaatgttcttgatatgtc
cttcaggagatagttaatgcacactctgtgtgttatttttaaattttgaa
caaaataccagttaatataccactcctgggcatatacccaaatgatgctc
caatatatagcaaggacacatgttccactaggtattgcaaactttatatg
ccccagtacaagggaaggccagggccaagaagtgggagtgggtgggtagg
ggac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_80337934_80338449
seq2: B6Ng01-172A20.b_588_1110 (reverse)

seq1  TTTTTAACTCACTTAAATCCATG--ACCTTGTCATATATATATATTTCAA  48
      |||| ||||||||||||||||||   |||||||||||| | |||||||| 
seq2  TTTTAAACTCACTTAAATCCATGGACCCTTGTCATATAGAAATATTTCAG  50

seq1  ATTAAAATGGAAAGAAATTTGAAGCAACTTCACTCAATCAGGAACAAGAA  98
      || |||  ||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATGGGAAAGAAATTTGAAGCAACTTCACTCAATCAGGAACAAGAA  100

seq1  AGGGCTGCCCACTC-TCTCCCTATCTGTTG-AAATTAGTACTTGAGGTTC  146
      |||||||||||||| ||||||||||||||| |||||||||||||||||||
seq2  AGGGCTGCCCACTCTTCTCCCTATCTGTTGAAAATTAGTACTTGAGGTTC  150

seq1  TAGCTAGAACAGTAAGACAACCATAGAAGAACAAGGAGATATGAAGTG-A  195
      |||||||||||||||||| ||||||||||||||||||||||||||||| |
seq2  TAGCTAGAACAGTAAGAC-ACCATAGAAGAACAAGGAGATATGAAGTGAA  199

seq1  AAAGTAAATGTCATGGTATCACTCTTCGCAGATTATATGTGAGAATACAT  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAAATGTCATGGTATCACTCTTCGCAGATTATATGTGAGAATACAT  249

seq1  -AACCATCTCCC-AAGTTTCTACCAGAG-AACTCCTAAAGCTGAAAAACA  292
       ||||||||||| ||||||||||||||| |||||||||||||||||||||
seq2  AAACCATCTCCCAAAGTTTCTACCAGAGAAACTCCTAAAGCTGAAAAACA  299

seq1  ACTTCAGCCAAGTGGCAGGATATAAAATTAACTCAAACTAATAAGTAACC  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAGCCAAGTGGCAGGATATAAAATTAACTCAAACTAATAAGTAACC  349

seq1  TTCCATTATGCAAATGATAAATGGGCTGAAAAAGAAATTAGGGAAACAGC  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATTATGCAAATGATAAATGGGCTGAAAAAGAAATTAGGGAAACAGC  399

seq1  CCCATTTACAATAGTCACAAATGATATAAAATTTCTTGGTATTGGTGACT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTTACAATAGTCACAAATGATATAAAATTTCTTGGTATTGGTGACT  449

seq1  CTAACCAAGCAAGTGAAAGAGCTGTACAAGAACTTCAAGTCCCTGAAGAA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACCAAGCAAGTGAAAGAGCTGTACAAGAACTTCAAGTCCCTGAAGAA  499

seq1  AGAAATCAAAGACCTCCCATGCTG  516
      ||||||||||||||||||||||||
seq2  AGAAATCAAAGACCTCCCATGCTG  523


seq1: chr5_80180962_80181520
seq2: B6Ng01-172A20.g_67_625

seq1  GAATTCTGTGAGGTAAACAGTTTTACTGGAGACAGGAAGAACACATCAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGAGGTAAACAGTTTTACTGGAGACAGGAAGAACACATCAAT  50

seq1  TTGCTATTCAATATTAAATTATCATCACCAAAATCATATATTTAATACTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTATTCAATATTAAATTATCATCACCAAAATCATATATTTAATACTA  100

seq1  AAATTATACATTCTGAAGAGGTTTTAATTTTATATTAAGGGGTGACTACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATACATTCTGAAGAGGTTTTAATTTTATATTAAGGGGTGACTACC  150

seq1  TACATCCATATCTACACCTGTGTCTCTATTCATGTCTATCTAGTCTATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCCATATCTACACCTGTGTCTCTATTCATGTCTATCTAGTCTATCT  200

seq1  AGTCCATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTG  250

seq1  TATATCTATCTATCTATCAATCATTCATAGATAGATAGATAGATAGATAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCTATCTATCTATCAATCATTCATAGATAGATAGATAGATAGATAG  300

seq1  GTAGATAGATATAATAAAAATGGCTTGTTTATATTTTTAAATGTTCTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATAGATATAATAAAAATGGCTTGTTTATATTTTTAAATGTTCTTGA  350

seq1  TATGTCCTTCAGGAGATAGTTAATGCACACTCTGTGTGTTATTTTTAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCCTTCAGGAGATAGTTAATGCACACTCTGTGTGTTATTTTTAAAT  400

seq1  TTTGAACAAAATACCAGTTAATATACCACTCCTGGGCATATACCCAAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAACAAAATACCAGTTAATATACCACTCCTGGGCATATACCCAAATG  450

seq1  ATGCTCCAATATATAGCAAGGACACATGTTCCACTAGGTATTGCAAACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCCAATATATAGCAAGGACACATGTTCCACTAGGTATTGCAAACTT  500

seq1  TATATGCCCCAGTACAAGGGAAGGCCAGGGCCAAGAAGTGGGAGTGGGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGCCCCAGTACAAGGGAAGGCCAGGGCCAAGAAGTGGGAGTGGGTG  550

seq1  GGTAGGGGA  559
      |||||||||
seq2  GGTAGGGGA  559


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