BAC Information

Click to search

BAC

Clone NameB6Ng01-172B19
Chromosome5 (Build37)
Map Location 13,294,683 - 13,456,491
singlet/doubletdoublet
Overlap geneSema3a
Upstream geneEG668059, Sema3d, LOC668015, LOC100042917, LOC668069, LOC433845, LOC625989, LOC670717
Downstream geneLOC208055, LOC626053, Speer3, EG626067, LOC668085, LOC384149, LOC384148, Sema3e, LOC100042957
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-172B19.bB6Ng01-172B19.g
ACCGA000816GA000817
length1,0961,115
definitionB6Ng01-172B19.b B6Ng01-172B19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,455,393 - 13,456,491)(13,294,683 - 13,295,800)
sequence
gaattcaagtctacattttagggagggtttaacaatcagattgccttttg
ataacacctgcttagacctggatgttggaaacatacaagatgaatttctt
ctaaatgttaatgtttaaaatagacaaaagcttcaggtataattttgtgt
ttcagatttcctgaaatattgataaggcataaaatagagtatataggttg
taattaaattatagtaatctatttactaagaaagttgaactgtttttatg
gtttgttcagatttaagctttacttccaagctactgcatactttgttatc
aagtttacctacggaagaaatgacctcttgtaaaagttatttaccaatcg
atgaatgataaatccattatagcattgcataaattgtatttgacaccata
gtgtctaggatactgcaagttacatagttcattcttagtatctatttgaa
aaataagaagaaggatagaaaaactagtaacaaaatgtaaaagaaagata
aaagaaagaaaaacaaaatataatatataaaaagaaaacaaaggtaattt
aatagtgatgacctagggacacattatcgttcaagaggaaccaatatgaa
ttaacatatttaactctccctgtacaaatgatttaccatgtaatgtaggc
atgtatgaaacaatgttgcattttgaataaaccatcaaagaaattattgt
tatcattacctgctttctttttataaaattatgtttctataattgaacaa
tatcacttattcttccagttataagatccacaacaacaacaacaaaatgg
tgttcacaagaatacgagagaagagatcacatagtagtaaattacttaag
aaattactaaaataagttagcagattaatgcttaccaggatatcttttcc
agcccatttgcattcatctctccttgtgtaagatactggccacacaatct
aaggacacagaagaatcatattttatgcaattaaatttgccaagatattt
gttactgtgtaatctttgaatttataggcacagcttagggaaagaaatat
tatatgcaggaatctttcaattgactggtctttttaacagtagcta

gaattcaataatcattaccagaggtggggaagttaggacttgtgtgaaaa
aattttactctcaaattttgaacagaagtaatctgaagagaattattgct
attatcaataagttatgaaatttttatttaaaaatttaagattatatgga
tgacatatttgtctaactcaaatattctattattaagacacatatatgtt
tcaataatgtgagattggaaggtctataatgtcttttatattagtttctg
acggaaagaatagttctttcacattttgagtgctgtctatacattttctc
atatgtgtttgatggtaaataattctacagttattatatgccaatatcct
attattaacatgttgagtagtcattcaagtaggacagggtcatcaaagag
tctgtaggacagagaaggaagcactgaacttggaagagtaaaaaatataa
tctcacatcatttcacaaggaaaattaaaaatgtgtgaatgggaacgaag
aaggtgtaatagcaatgctgtgaccagcagtactgtggaactgttattgg
gttcaaggataagtactgtcaatttcacatggccatcaagtaatgatggc
tagctgtgttgggagggtcttttttgctctgcaactgtagagctcagact
caggctattcaagggttcaatgctgttactgtgaccttcggagagttcca
tactgttactatgcaccttctgagagtctcgttgccttatttggttttcc
tcacaagtttggtctattaatagtagttttattttcacaccgattttaat
atatacattgaagcatgttattatttttgaaagaacagattttgaaggac
ttaactctttcctgataaatttataccctcattgactgtttaaagactta
ccttatttgttcatgactgagtcttcttttatgttctaaattgtattctc
acaaataaaattgtctccgttatacatgggctcatttccatttaaaggga
caggtaatattgagtaatatgaaaatggataattctttcaagaaatgttc
tagttcatttgagttaaaatataaattattatgattttctgaatgttaag
agagtaggacattaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_13455393_13456491
seq2: B6Ng01-172B19.b_43_1138 (reverse)

seq1  TAGCTACTGTT-AAAAGA-CAGTCAAATTTGAAAGATTCCTGCATATAAT  48
      ||||||||||| |||||| |||||||  ||||||||||||||||||||||
seq2  TAGCTACTGTTAAAAAGACCAGTCAA--TTGAAAGATTCCTGCATATAAT  48

seq1  ATTTCTTTCCCTAAGCTGTGCCTAATAAATTCAAAAGATTACACAGTAAC  98
      ||||||||||||||||||||||| |||||||| |||||||||||||||||
seq2  ATTTCTTTCCCTAAGCTGTGCCT-ATAAATTC-AAAGATTACACAGTAAC  96

seq1  AAATATCTTGGCAAATTTAATTGCATAAAAATATGATTCTTCTGTGTCCT  148
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AAATATCTTGGCAAATTTAATTGCAT-AAAATATGATTCTTCTGTGTCCT  145

seq1  TAGATTGTGTGGCCAGTATCTTACACAAGGAGAGATGAATGCAAATGGGC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTGTGTGGCCAGTATCTTACACAAGGAGAGATGAATGCAAATGGGC  195

seq1  TGGAAAAGATATCCTGGTAAGCATTAATCTGCTAACTTATTTTAGTAATT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAAGATATCCTGGTAAGCATTAATCTGCTAACTTATTTTAGTAATT  245

seq1  TCTTAAGTAATTTACTACTATGTGATCTCTTCTCTCGTATTCTTGTGAAC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAGTAATTTACTACTATGTGATCTCTTCTCTCGTATTCTTGTGAAC  295

seq1  ACCATTTTGTTGTTGTTGTTGTGGATCTTATAACTGGAAGAATAAGTGAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTTTGTTGTTGTTGTTGTGGATCTTATAACTGGAAGAATAAGTGAT  345

seq1  ATTGTTCAATTATAGAAACATAATTTTATAAAAAGAAAGCAGGTAATGAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTCAATTATAGAAACATAATTTTATAAAAAGAAAGCAGGTAATGAT  395

seq1  AACAATAATTTCTTTGATGGTTTATTCAAAATGCAACATTGTTTCATACA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATAATTTCTTTGATGGTTTATTCAAAATGCAACATTGTTTCATACA  445

seq1  TGCCTACATTACATGGTAAATCATTTGTACAGGGAGAGTTAAATATGTTA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTACATTACATGGTAAATCATTTGTACAGGGAGAGTTAAATATGTTA  495

seq1  ATTCATATTGGTTCCTCTTGAACGATAATGTGTCCCTAGGTCATCACTAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATATTGGTTCCTCTTGAACGATAATGTGTCCCTAGGTCATCACTAT  545

seq1  TAAATTACCTTTGTTTTCTTTTTATATATTATATTTTGTTTTTCTTTCTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTACCTTTGTTTTCTTTTTATATATTATATTTTGTTTTTCTTTCTT  595

seq1  TTATCTTTCTTTTACATTTTGTTACTAGTTTTTCTATCCTTCTTCTTATT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTTTCTTTTACATTTTGTTACTAGTTTTTCTATCCTTCTTCTTATT  645

seq1  TTTCAAATAGATACTAAGAATGAACTATGTAACTTGCAGTATCCTAGACA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAATAGATACTAAGAATGAACTATGTAACTTGCAGTATCCTAGACA  695

seq1  CTATGGTGTCAAATACAATTTATGCAATGCTATAATGGATTTATCATTCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGTGTCAAATACAATTTATGCAATGCTATAATGGATTTATCATTCA  745

seq1  TCGATTGGTAAATAACTTTTACAAGAGGTCATTTCTTCCGTAGGTAAACT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGATTGGTAAATAACTTTTACAAGAGGTCATTTCTTCCGTAGGTAAACT  795

seq1  TGATAACAAAGTATGCAGTAGCTTGGAAGTAAAGCTTAAATCTGAACAAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAACAAAGTATGCAGTAGCTTGGAAGTAAAGCTTAAATCTGAACAAA  845

seq1  CCATAAAAACAGTTCAACTTTCTTAGTAAATAGATTACTATAATTTAATT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAAAACAGTTCAACTTTCTTAGTAAATAGATTACTATAATTTAATT  895

seq1  ACAACCTATATACTCTATTTTATGCCTTATCAATATTTCAGGAAATCTGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCTATATACTCTATTTTATGCCTTATCAATATTTCAGGAAATCTGA  945

seq1  AACACAAAATTATACCTGAAGCTTTTGTCTATTTTAAACATTAACATTTA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAAAATTATACCTGAAGCTTTTGTCTATTTTAAACATTAACATTTA  995

seq1  GAAGAAATTCATCTTGTATGTTTCCAACATCCAGGTCTAAGCAGGTGTTA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAATTCATCTTGTATGTTTCCAACATCCAGGTCTAAGCAGGTGTTA  1045

seq1  TCAAAAGGCAATCTGATTGTTAAACCCTCCCTAAAATGTAGACTTGAATT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAGGCAATCTGATTGTTAAACCCTCCCTAAAATGTAGACTTGAATT  1095

seq1  C  1099
      |
seq2  C  1096


seq1: chr5_13294683_13295800
seq2: B6Ng01-172B19.g_63_1177

seq1  GAATTCAATAATCATTACCAGAGGTGGGGAAGTTAGGACTTGTGTGAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATAATCATTACCAGAGGTGGGGAAGTTAGGACTTGTGTGAAAA  50

seq1  AATTTTACTCTCAAATTTTGAACAGAAGTAATCTGAAGAGAATTATTGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTACTCTCAAATTTTGAACAGAAGTAATCTGAAGAGAATTATTGCT  100

seq1  ATTATCAATAAGTTATGAAATTTTTATTTAAAAATTTAAGATTATATGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCAATAAGTTATGAAATTTTTATTTAAAAATTTAAGATTATATGGA  150

seq1  TGACATATTTGTCTAACTCAAATATTCTATTATTAAGACACATATATGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATATTTGTCTAACTCAAATATTCTATTATTAAGACACATATATGTT  200

seq1  TCAATAATGTGAGATTGGAAGGTCTATAATGTCTTTTATATTAGTTTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATAATGTGAGATTGGAAGGTCTATAATGTCTTTTATATTAGTTTCTG  250

seq1  ACGGAAAGAATAGTTCTTTCACATTTTGAGTGCTGTCTATACATTTTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGAAAGAATAGTTCTTTCACATTTTGAGTGCTGTCTATACATTTTCTC  300

seq1  ATATGTGTTTGATGGTAAATAATTCTACAGTTATTATATGCCAATATCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTGTTTGATGGTAAATAATTCTACAGTTATTATATGCCAATATCCT  350

seq1  ATTATTAACATGTTGAGTAGTCATTCAAGTAGGACAGGGTCATCAAAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTAACATGTTGAGTAGTCATTCAAGTAGGACAGGGTCATCAAAGAG  400

seq1  TCTGTAGGACAGAGAAGGAAGCACTGAACTTGGAAGAGTAAAAAATATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAGGACAGAGAAGGAAGCACTGAACTTGGAAGAGTAAAAAATATAA  450

seq1  TCTCACATCATTTCACAAGGAAAATTAAAAATGTGTGAATGGGAACGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACATCATTTCACAAGGAAAATTAAAAATGTGTGAATGGGAACGAAG  500

seq1  AAGGTGTAATAGCAATGCTGTGACCAGCAGTACTGTGGAACTGTTATTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGTAATAGCAATGCTGTGACCAGCAGTACTGTGGAACTGTTATTGG  550

seq1  GTTCAAGGATAAGTACTGTCAATTTCACATGGCCATCAAGTAATGATGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAGGATAAGTACTGTCAATTTCACATGGCCATCAAGTAATGATGGC  600

seq1  TAGCTGTGTTGGGAGGGTCTTTTTTGCTCTGCAACTGTAGAGCTCAGACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGTGTTGGGAGGGTCTTTTTTGCTCTGCAACTGTAGAGCTCAGACT  650

seq1  CAGGCTATTCAAGGGTTCAATGCTGTTACTGTGACCTTCGGAGAGTTCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTATTCAAGGGTTCAATGCTGTTACTGTGACCTTCGGAGAGTTCCA  700

seq1  TACTGTTACTATGCACCTTCTGAGAGTCTCGTTGCCTTATTTGGTTTTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTTACTATGCACCTTCTGAGAGTCTCGTTGCCTTATTTGGTTTTCC  750

seq1  TCACAAGTTTGGTCTATTAATAGTAGTTTTATTTTCACACCGATTTTAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAGTTTGGTCTATTAATAGTAGTTTTATTTTCACACCGATTTTAAT  800

seq1  ATATACATTGAAGCATGTTATTATTTTTGAAAGAACAGATTTTGAAGGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACATTGAAGCATGTTATTATTTTTGAAAGAACAGATTTTGAAGGAC  850

seq1  TTAACTCTTTCCTGATAAATTTATACCCTCATTGACTGTTTAAAGACTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTCTTTCCTGATAAATTTATACCCTCATTGACTGTTTAAAGACTTA  900

seq1  CCTTATTTGTTCATGACTGAGTCTTCTTTTTATGTTCTAAATTGTATTCT  950
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CCTTATTTGTTCATGACTGAGTCTTC-TTTTATGTTCTAAATTGTATTCT  949

seq1  CACAAATAAAATTGTCTCCGTTATACAT-GGCTCATTTCCATTTTAAAGG  999
      |||||||||||||||||||||||||||| ||||||||||||||| || ||
seq2  CACAAATAAAATTGTCTCCGTTATACATGGGCTCATTTCCATTTAAAGGG  999

seq1  ACAGGTAATATTGAGT-ATATGAAAATGGAATAATTCTT--CAGAAATGT  1046
      |||||||||||||||| |||||||||||| |||||||||   ||||||||
seq2  ACAGGTAATATTGAGTAATATGAAAATGG-ATAATTCTTTCAAGAAATGT  1048

seq1  TCCTAGTCAATTTGAGTTAAAATAATAAATTATTTATGATTTTCTGAATG  1096
      | |||||  |||||||||||||| |||||||| |||||||||||||||||
seq2  T-CTAGTTCATTTGAGTTAAAAT-ATAAATTA-TTATGATTTTCTGAATG  1095

seq1  GTATAAGAGAGTAAGACATTAA  1118
         |||||||||| ||||||||
seq2  --TTAAGAGAGTAGGACATTAA  1115


| Home | SequenceCutter | Blast | Download |